data_4ZDN
#
_model_server_result.job_id            zB9F1aA__ddH8QtUvAohbA 
_model_server_result.datetime_utc      '2025-02-20 15:30:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4zdn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1201}' 
#
_entry.id    4ZDN 
#
_exptl.entry_id    4ZDN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              238.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4ZDN 
_cell.length_a            126.685 
_cell.length_b            126.685 
_cell.length_c            143.681 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ZDN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        95 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z+1/4 0 1 0 1 0 0 0 0 -1 0 0 35.92025 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASP 90 A ASP 639 1_555 A N MSE 91 A MSE 640 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C MSE 91 A MSE 640 1_555 A N ASP 92 A ASP 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 A C SER 171 A SER 720 1_555 A N MSE 172 A MSE 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale4 A C MSE 172 A MSE 721 1_555 A N PRO 173 A PRO 722 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale5 A C THR 176 A THR 725 1_555 A N MSE 177 A MSE 726 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 A C MSE 177 A MSE 726 1_555 A N CYS 178 A CYS 727 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale7 A C ARG 221 A ARG 770 1_555 A N MSE 222 A MSE 771 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale8 A C MSE 222 A MSE 771 1_555 A N LEU 223 A LEU 772 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale9 A C GLU 495 A GLU 1044 1_555 A N MSE 496 A MSE 1045 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale10 A C MSE 496 A MSE 1045 1_555 A N ALA 497 A ALA 1046 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale11 A C GLY 597 A GLY 1146 1_555 A N MSE 598 A MSE 1147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale12 A C MSE 598 A MSE 1147 1_555 A N PRO 599 A PRO 1148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
#
_chem_comp.formula           'C8 H18 N2 O4 S' 
_chem_comp.formula_weight    238.305 
_chem_comp.id                EPE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEPES 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 EPE sing 83 n n 
N1 C6 EPE sing 84 n n 
N1 C9 EPE sing 85 n n 
C2 C3 EPE sing 86 n n 
C2 H21 EPE sing 87 n n 
C2 H22 EPE sing 88 n n 
C3 N4 EPE sing 89 n n 
C3 H31 EPE sing 90 n n 
C3 H32 EPE sing 91 n n 
N4 C5 EPE sing 92 n n 
N4 C7 EPE sing 93 n n 
C5 C6 EPE sing 94 n n 
C5 H51 EPE sing 95 n n 
C5 H52 EPE sing 96 n n 
C6 H61 EPE sing 97 n n 
C6 H62 EPE sing 98 n n 
C7 C8 EPE sing 99 n n 
C7 H71 EPE sing 100 n n 
C7 H72 EPE sing 101 n n 
C8 O8 EPE sing 102 n n 
C8 H81 EPE sing 103 n n 
C8 H82 EPE sing 104 n n 
O8 HO8 EPE sing 105 n n 
C9 C10 EPE sing 106 n n 
C9 H91 EPE sing 107 n n 
C9 H92 EPE sing 108 n n 
C10 S EPE sing 109 n n 
C10 H101 EPE sing 110 n n 
C10 H102 EPE sing 111 n n 
S O1S EPE doub 112 n n 
S O2S EPE doub 113 n n 
S O3S EPE sing 114 n n 
O3S HOS3 EPE sing 115 n n 
#
_atom_sites.entry_id                     4ZDN 
_atom_sites.fract_transf_matrix[1][1]    0.007894 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007894 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00696 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EPE A 1 1201 1 EPE EPE . 
C 3 CL A 1 1202 2 CL CL . 
D 4 HOH A 1 1301 120 HOH HOH . 
D 4 HOH A 2 1302 115 HOH HOH . 
D 4 HOH A 3 1303 41 HOH HOH . 
D 4 HOH A 4 1304 68 HOH HOH . 
D 4 HOH A 5 1305 118 HOH HOH . 
D 4 HOH A 6 1306 46 HOH HOH . 
D 4 HOH A 7 1307 35 HOH HOH . 
D 4 HOH A 8 1308 86 HOH HOH . 
D 4 HOH A 9 1309 122 HOH HOH . 
D 4 HOH A 10 1310 83 HOH HOH . 
D 4 HOH A 11 1311 72 HOH HOH . 
D 4 HOH A 12 1312 119 HOH HOH . 
D 4 HOH A 13 1313 58 HOH HOH . 
D 4 HOH A 14 1314 13 HOH HOH . 
D 4 HOH A 15 1315 108 HOH HOH . 
D 4 HOH A 16 1316 10 HOH HOH . 
D 4 HOH A 17 1317 99 HOH HOH . 
D 4 HOH A 18 1318 1 HOH HOH . 
D 4 HOH A 19 1319 37 HOH HOH . 
D 4 HOH A 20 1320 110 HOH HOH . 
D 4 HOH A 21 1321 2 HOH HOH . 
D 4 HOH A 22 1322 7 HOH HOH . 
D 4 HOH A 23 1323 4 HOH HOH . 
D 4 HOH A 24 1324 80 HOH HOH . 
D 4 HOH A 25 1325 42 HOH HOH . 
D 4 HOH A 26 1326 24 HOH HOH . 
D 4 HOH A 27 1327 85 HOH HOH . 
D 4 HOH A 28 1328 112 HOH HOH . 
D 4 HOH A 29 1329 66 HOH HOH . 
D 4 HOH A 30 1330 114 HOH HOH . 
D 4 HOH A 31 1331 39 HOH HOH . 
D 4 HOH A 32 1332 14 HOH HOH . 
D 4 HOH A 33 1333 64 HOH HOH . 
D 4 HOH A 34 1334 109 HOH HOH . 
D 4 HOH A 35 1335 40 HOH HOH . 
D 4 HOH A 36 1336 77 HOH HOH . 
D 4 HOH A 37 1337 19 HOH HOH . 
D 4 HOH A 38 1338 36 HOH HOH . 
D 4 HOH A 39 1339 25 HOH HOH . 
D 4 HOH A 40 1340 20 HOH HOH . 
D 4 HOH A 41 1341 96 HOH HOH . 
D 4 HOH A 42 1342 44 HOH HOH . 
D 4 HOH A 43 1343 88 HOH HOH . 
D 4 HOH A 44 1344 28 HOH HOH . 
D 4 HOH A 45 1345 116 HOH HOH . 
D 4 HOH A 46 1346 5 HOH HOH . 
D 4 HOH A 47 1347 81 HOH HOH . 
D 4 HOH A 48 1348 125 HOH HOH . 
D 4 HOH A 49 1349 92 HOH HOH . 
D 4 HOH A 50 1350 9 HOH HOH . 
D 4 HOH A 51 1351 121 HOH HOH . 
D 4 HOH A 52 1352 23 HOH HOH . 
D 4 HOH A 53 1353 34 HOH HOH . 
D 4 HOH A 54 1354 30 HOH HOH . 
D 4 HOH A 55 1355 6 HOH HOH . 
D 4 HOH A 56 1356 8 HOH HOH . 
D 4 HOH A 57 1357 117 HOH HOH . 
D 4 HOH A 58 1358 55 HOH HOH . 
D 4 HOH A 59 1359 71 HOH HOH . 
D 4 HOH A 60 1360 107 HOH HOH . 
D 4 HOH A 61 1361 59 HOH HOH . 
D 4 HOH A 62 1362 47 HOH HOH . 
D 4 HOH A 63 1363 11 HOH HOH . 
D 4 HOH A 64 1364 126 HOH HOH . 
D 4 HOH A 65 1365 60 HOH HOH . 
D 4 HOH A 66 1366 43 HOH HOH . 
D 4 HOH A 67 1367 32 HOH HOH . 
D 4 HOH A 68 1368 12 HOH HOH . 
D 4 HOH A 69 1369 26 HOH HOH . 
D 4 HOH A 70 1370 78 HOH HOH . 
D 4 HOH A 71 1371 94 HOH HOH . 
D 4 HOH A 72 1372 90 HOH HOH . 
D 4 HOH A 73 1373 56 HOH HOH . 
D 4 HOH A 74 1374 53 HOH HOH . 
D 4 HOH A 75 1375 29 HOH HOH . 
D 4 HOH A 76 1376 27 HOH HOH . 
D 4 HOH A 77 1377 87 HOH HOH . 
D 4 HOH A 78 1378 84 HOH HOH . 
D 4 HOH A 79 1379 45 HOH HOH . 
D 4 HOH A 80 1380 75 HOH HOH . 
D 4 HOH A 81 1381 97 HOH HOH . 
D 4 HOH A 82 1382 33 HOH HOH . 
D 4 HOH A 83 1383 79 HOH HOH . 
D 4 HOH A 84 1384 65 HOH HOH . 
D 4 HOH A 85 1385 52 HOH HOH . 
D 4 HOH A 86 1386 102 HOH HOH . 
D 4 HOH A 87 1387 15 HOH HOH . 
D 4 HOH A 88 1388 106 HOH HOH . 
D 4 HOH A 89 1389 74 HOH HOH . 
D 4 HOH A 90 1390 103 HOH HOH . 
D 4 HOH A 91 1391 3 HOH HOH . 
D 4 HOH A 92 1392 22 HOH HOH . 
D 4 HOH A 93 1393 63 HOH HOH . 
D 4 HOH A 94 1394 70 HOH HOH . 
D 4 HOH A 95 1395 48 HOH HOH . 
D 4 HOH A 96 1396 123 HOH HOH . 
D 4 HOH A 97 1397 57 HOH HOH . 
D 4 HOH A 98 1398 93 HOH HOH . 
D 4 HOH A 99 1399 54 HOH HOH . 
D 4 HOH A 100 1400 31 HOH HOH . 
D 4 HOH A 101 1401 62 HOH HOH . 
D 4 HOH A 102 1402 82 HOH HOH . 
D 4 HOH A 103 1403 111 HOH HOH . 
D 4 HOH A 104 1404 49 HOH HOH . 
D 4 HOH A 105 1405 124 HOH HOH . 
D 4 HOH A 106 1406 21 HOH HOH . 
D 4 HOH A 107 1407 18 HOH HOH . 
D 4 HOH A 108 1408 16 HOH HOH . 
D 4 HOH A 109 1409 76 HOH HOH . 
D 4 HOH A 110 1410 17 HOH HOH . 
D 4 HOH A 111 1411 100 HOH HOH . 
D 4 HOH A 112 1412 61 HOH HOH . 
D 4 HOH A 113 1413 89 HOH HOH . 
D 4 HOH A 114 1414 50 HOH HOH . 
D 4 HOH A 115 1415 69 HOH HOH . 
D 4 HOH A 116 1416 104 HOH HOH . 
D 4 HOH A 117 1417 101 HOH HOH . 
D 4 HOH A 118 1418 105 HOH HOH . 
D 4 HOH A 119 1419 91 HOH HOH . 
D 4 HOH A 120 1420 38 HOH HOH . 
D 4 HOH A 121 1421 51 HOH HOH . 
D 4 HOH A 122 1422 113 HOH HOH . 
D 4 HOH A 123 1423 98 HOH HOH . 
D 4 HOH A 124 1424 67 HOH HOH . 
D 4 HOH A 125 1425 95 HOH HOH . 
D 4 HOH A 126 1426 73 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 EPE . . . B 2 46.451 6.37 25.96 1 43.69 ? N1 EPE 1201 A 1 
HETATM 2 C C2 EPE . . . B 2 46.523 7.415 26.998 1 45.1 ? C2 EPE 1201 A 1 
HETATM 3 C C3 EPE . . . B 2 45.318 8.349 26.925 1 46.44 ? C3 EPE 1201 A 1 
HETATM 4 N N4 EPE . . . B 2 45.147 8.858 25.581 1 46.9 ? N4 EPE 1201 A 1 
HETATM 5 C C5 EPE . . . B 2 45.239 7.922 24.484 1 42.1 ? C5 EPE 1201 A 1 
HETATM 6 C C6 EPE . . . B 2 46.424 6.975 24.62 1 42.97 ? C6 EPE 1201 A 1 
HETATM 7 C C7 EPE . . . B 2 44.624 10.194 25.35 1 45.36 ? C7 EPE 1201 A 1 
HETATM 8 C C8 EPE . . . B 2 43.104 10.234 25.244 1 44.04 ? C8 EPE 1201 A 1 
HETATM 9 O O8 EPE . . . B 2 42.539 10.015 26.517 1 52.18 ? O8 EPE 1201 A 1 
HETATM 10 C C9 EPE . . . B 2 47.657 5.536 26.063 1 38.57 ? C9 EPE 1201 A 1 
HETATM 11 C C10 EPE . . . B 2 47.334 4.249 26.803 1 42.15 ? C10 EPE 1201 A 1 
HETATM 12 S S EPE . . . B 2 48.794 3.21 27.078 1 43.46 ? S EPE 1201 A 1 
HETATM 13 O O1S EPE . . . B 2 49.345 2.797 25.788 1 34.77 ? O1S EPE 1201 A 1 
HETATM 14 O O2S EPE . . . B 2 48.391 2.018 27.822 1 55.6 ? O2S EPE 1201 A 1 
HETATM 15 O O3S EPE . . . B 2 49.798 3.947 27.845 1 45.81 ? O3S EPE 1201 A 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#