data_4ZDT # _model_server_result.job_id 9Ft89m1tlXaIVwjkSrRTJA _model_server_result.datetime_utc '2024-10-20 03:37:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zdt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 4ZDT # _exptl.entry_id 4ZDT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZDT _cell.length_a 85.233 _cell.length_b 85.233 _cell.length_c 74.835 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZDT _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,O,P 1 1 C,D,J,K,L,M,N,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 J N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 6 A CYS 180 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc2 A SG CYS 9 A CYS 183 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc3 A SG CYS 22 A CYS 196 1_555 F ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc4 A SG CYS 27 A CYS 201 1_555 F ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc5 A ND1 HIS 32 A HIS 206 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc6 A SG CYS 35 A CYS 209 1_555 E ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc7 A SG CYS 54 A CYS 228 1_555 F ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc8 A SG CYS 57 A CYS 231 1_555 F ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc9 C SG CYS 6 C CYS 180 1_555 J ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc10 C SG CYS 9 C CYS 183 1_555 J ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc11 C SG CYS 22 C CYS 196 1_555 K ZN ZN . C ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc12 C SG CYS 27 C CYS 201 1_555 K ZN ZN . C ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc13 C ND1 HIS 32 C HIS 206 1_555 J ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc14 C SG CYS 35 C CYS 209 1_555 J ZN ZN . C ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc15 C SG CYS 54 C CYS 228 1_555 K ZN ZN . C ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc16 C SG CYS 57 C CYS 231 1_555 K ZN ZN . C ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4ZDT _atom_sites.fract_transf_matrix[1][1] 0.011733 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011733 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013363 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 301 1 ZN ZN . F 3 ZN A 1 302 2 ZN ZN . G 4 GOL B 1 501 1 GOL GOL . H 4 GOL B 1 502 3 GOL GOL . I 4 GOL B 1 503 4 GOL GOL . J 3 ZN C 1 301 3 ZN ZN . K 3 ZN C 1 302 4 ZN ZN . L 4 GOL D 1 501 2 GOL GOL . M 4 GOL D 1 502 5 GOL GOL . N 5 SO4 D 1 503 1 SO4 SO4 . O 6 HOH A 1 401 63 HOH HOH . O 6 HOH A 2 402 58 HOH HOH . O 6 HOH A 3 403 53 HOH HOH . O 6 HOH A 4 404 90 HOH HOH . O 6 HOH A 5 405 106 HOH HOH . O 6 HOH A 6 406 49 HOH HOH . O 6 HOH A 7 407 11 HOH HOH . O 6 HOH A 8 408 99 HOH HOH . O 6 HOH A 9 409 22 HOH HOH . O 6 HOH A 10 410 75 HOH HOH . O 6 HOH A 11 411 81 HOH HOH . O 6 HOH A 12 412 25 HOH HOH . O 6 HOH A 13 413 57 HOH HOH . O 6 HOH A 14 414 62 HOH HOH . O 6 HOH A 15 415 83 HOH HOH . O 6 HOH A 16 416 51 HOH HOH . O 6 HOH A 17 417 36 HOH HOH . O 6 HOH A 18 418 97 HOH HOH . O 6 HOH A 19 419 28 HOH HOH . O 6 HOH A 20 420 13 HOH HOH . O 6 HOH A 21 421 105 HOH HOH . O 6 HOH A 22 422 39 HOH HOH . O 6 HOH A 23 423 72 HOH HOH . O 6 HOH A 24 424 7 HOH HOH . O 6 HOH A 25 425 19 HOH HOH . O 6 HOH A 26 426 23 HOH HOH . O 6 HOH A 27 427 73 HOH HOH . O 6 HOH A 28 428 21 HOH HOH . O 6 HOH A 29 429 15 HOH HOH . O 6 HOH A 30 430 33 HOH HOH . O 6 HOH A 31 431 38 HOH HOH . O 6 HOH A 32 432 100 HOH HOH . O 6 HOH A 33 433 8 HOH HOH . O 6 HOH A 34 434 102 HOH HOH . P 6 HOH B 1 601 79 HOH HOH . P 6 HOH B 2 602 26 HOH HOH . P 6 HOH B 3 603 98 HOH HOH . P 6 HOH B 4 604 2 HOH HOH . P 6 HOH B 5 605 18 HOH HOH . P 6 HOH B 6 606 32 HOH HOH . P 6 HOH B 7 607 67 HOH HOH . P 6 HOH B 8 608 9 HOH HOH . P 6 HOH B 9 609 17 HOH HOH . P 6 HOH B 10 610 65 HOH HOH . P 6 HOH B 11 611 40 HOH HOH . P 6 HOH B 12 612 4 HOH HOH . P 6 HOH B 13 613 94 HOH HOH . P 6 HOH B 14 614 34 HOH HOH . P 6 HOH B 15 615 35 HOH HOH . P 6 HOH B 16 616 55 HOH HOH . P 6 HOH B 17 617 54 HOH HOH . Q 6 HOH C 1 401 69 HOH HOH . Q 6 HOH C 2 402 89 HOH HOH . Q 6 HOH C 3 403 37 HOH HOH . Q 6 HOH C 4 404 82 HOH HOH . Q 6 HOH C 5 405 50 HOH HOH . Q 6 HOH C 6 406 68 HOH HOH . Q 6 HOH C 7 407 52 HOH HOH . Q 6 HOH C 8 408 84 HOH HOH . Q 6 HOH C 9 409 60 HOH HOH . Q 6 HOH C 10 410 27 HOH HOH . Q 6 HOH C 11 411 77 HOH HOH . Q 6 HOH C 12 412 3 HOH HOH . Q 6 HOH C 13 413 91 HOH HOH . Q 6 HOH C 14 414 74 HOH HOH . Q 6 HOH C 15 415 103 HOH HOH . Q 6 HOH C 16 416 20 HOH HOH . Q 6 HOH C 17 417 95 HOH HOH . Q 6 HOH C 18 418 92 HOH HOH . Q 6 HOH C 19 419 46 HOH HOH . Q 6 HOH C 20 420 42 HOH HOH . Q 6 HOH C 21 421 71 HOH HOH . Q 6 HOH C 22 422 76 HOH HOH . Q 6 HOH C 23 423 70 HOH HOH . Q 6 HOH C 24 424 56 HOH HOH . Q 6 HOH C 25 425 107 HOH HOH . Q 6 HOH C 26 426 10 HOH HOH . Q 6 HOH C 27 427 30 HOH HOH . Q 6 HOH C 28 428 78 HOH HOH . Q 6 HOH C 29 429 47 HOH HOH . Q 6 HOH C 30 430 104 HOH HOH . R 6 HOH D 1 601 64 HOH HOH . R 6 HOH D 2 602 93 HOH HOH . R 6 HOH D 3 603 31 HOH HOH . R 6 HOH D 4 604 61 HOH HOH . R 6 HOH D 5 605 101 HOH HOH . R 6 HOH D 6 606 85 HOH HOH . R 6 HOH D 7 607 29 HOH HOH . R 6 HOH D 8 608 24 HOH HOH . R 6 HOH D 9 609 48 HOH HOH . R 6 HOH D 10 610 14 HOH HOH . R 6 HOH D 11 611 87 HOH HOH . R 6 HOH D 12 612 86 HOH HOH . R 6 HOH D 13 613 12 HOH HOH . R 6 HOH D 14 614 96 HOH HOH . R 6 HOH D 15 615 41 HOH HOH . R 6 HOH D 16 616 88 HOH HOH . R 6 HOH D 17 617 6 HOH HOH . R 6 HOH D 18 618 45 HOH HOH . R 6 HOH D 19 619 59 HOH HOH . R 6 HOH D 20 620 5 HOH HOH . R 6 HOH D 21 621 16 HOH HOH . R 6 HOH D 22 622 43 HOH HOH . R 6 HOH D 23 623 80 HOH HOH . R 6 HOH D 24 624 66 HOH HOH . R 6 HOH D 25 625 1 HOH HOH . R 6 HOH D 26 626 44 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -25.716 _atom_site.Cartn_y 28.21 _atom_site.Cartn_z 3.407 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #