data_4ZDX # _model_server_result.job_id BCqxFTV6f99XZ1RpshxCdw _model_server_result.datetime_utc '2024-11-14 16:09:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zdx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4ZDX # _exptl.entry_id 4ZDX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZDX _cell.length_a 131.111 _cell.length_b 131.111 _cell.length_c 67.525 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZDX _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 82 A PHE 82 1_555 A N KCX 83 A KCX 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C KCX 83 A KCX 83 1_555 A N MET 84 A MET 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # _atom_sites.entry_id 4ZDX _atom_sites.fract_transf_matrix[1][1] 0.007627 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007627 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014809 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TOE A 1 301 21 TOE PEG . C 3 GOL A 1 302 31 GOL GOL . D 4 HOH A 1 401 136 HOH HOH . D 4 HOH A 2 402 57 HOH HOH . D 4 HOH A 3 403 131 HOH HOH . D 4 HOH A 4 404 12 HOH HOH . D 4 HOH A 5 405 19 HOH HOH . D 4 HOH A 6 406 113 HOH HOH . D 4 HOH A 7 407 6 HOH HOH . D 4 HOH A 8 408 56 HOH HOH . D 4 HOH A 9 409 139 HOH HOH . D 4 HOH A 10 410 75 HOH HOH . D 4 HOH A 11 411 90 HOH HOH . D 4 HOH A 12 412 88 HOH HOH . D 4 HOH A 13 413 114 HOH HOH . D 4 HOH A 14 414 85 HOH HOH . D 4 HOH A 15 415 69 HOH HOH . D 4 HOH A 16 416 125 HOH HOH . D 4 HOH A 17 417 68 HOH HOH . D 4 HOH A 18 418 10 HOH HOH . D 4 HOH A 19 419 129 HOH HOH . D 4 HOH A 20 420 81 HOH HOH . D 4 HOH A 21 421 92 HOH HOH . D 4 HOH A 22 422 22 HOH HOH . D 4 HOH A 23 423 110 HOH HOH . D 4 HOH A 24 424 109 HOH HOH . D 4 HOH A 25 425 40 HOH HOH . D 4 HOH A 26 426 48 HOH HOH . D 4 HOH A 27 427 13 HOH HOH . D 4 HOH A 28 428 4 HOH HOH . D 4 HOH A 29 429 127 HOH HOH . D 4 HOH A 30 430 7 HOH HOH . D 4 HOH A 31 431 98 HOH HOH . D 4 HOH A 32 432 1 HOH HOH . D 4 HOH A 33 433 5 HOH HOH . D 4 HOH A 34 434 83 HOH HOH . D 4 HOH A 35 435 45 HOH HOH . D 4 HOH A 36 436 97 HOH HOH . D 4 HOH A 37 437 74 HOH HOH . D 4 HOH A 38 438 120 HOH HOH . D 4 HOH A 39 439 82 HOH HOH . D 4 HOH A 40 440 64 HOH HOH . D 4 HOH A 41 441 33 HOH HOH . D 4 HOH A 42 442 122 HOH HOH . D 4 HOH A 43 443 70 HOH HOH . D 4 HOH A 44 444 30 HOH HOH . D 4 HOH A 45 445 16 HOH HOH . D 4 HOH A 46 446 121 HOH HOH . D 4 HOH A 47 447 77 HOH HOH . D 4 HOH A 48 448 72 HOH HOH . D 4 HOH A 49 449 118 HOH HOH . D 4 HOH A 50 450 43 HOH HOH . D 4 HOH A 51 451 38 HOH HOH . D 4 HOH A 52 452 107 HOH HOH . D 4 HOH A 53 453 62 HOH HOH . D 4 HOH A 54 454 153 HOH HOH . D 4 HOH A 55 455 79 HOH HOH . D 4 HOH A 56 456 37 HOH HOH . D 4 HOH A 57 457 73 HOH HOH . D 4 HOH A 58 458 135 HOH HOH . D 4 HOH A 59 459 76 HOH HOH . D 4 HOH A 60 460 23 HOH HOH . D 4 HOH A 61 461 111 HOH HOH . D 4 HOH A 62 462 105 HOH HOH . D 4 HOH A 63 463 130 HOH HOH . D 4 HOH A 64 464 14 HOH HOH . D 4 HOH A 65 465 101 HOH HOH . D 4 HOH A 66 466 41 HOH HOH . D 4 HOH A 67 467 60 HOH HOH . D 4 HOH A 68 468 94 HOH HOH . D 4 HOH A 69 469 80 HOH HOH . D 4 HOH A 70 470 63 HOH HOH . D 4 HOH A 71 471 117 HOH HOH . D 4 HOH A 72 472 61 HOH HOH . D 4 HOH A 73 473 67 HOH HOH . D 4 HOH A 74 474 155 HOH HOH . D 4 HOH A 75 475 128 HOH HOH . D 4 HOH A 76 476 65 HOH HOH . D 4 HOH A 77 477 24 HOH HOH . D 4 HOH A 78 478 134 HOH HOH . D 4 HOH A 79 479 54 HOH HOH . D 4 HOH A 80 480 147 HOH HOH . D 4 HOH A 81 481 53 HOH HOH . D 4 HOH A 82 482 106 HOH HOH . D 4 HOH A 83 483 59 HOH HOH . D 4 HOH A 84 484 25 HOH HOH . D 4 HOH A 85 485 52 HOH HOH . D 4 HOH A 86 486 34 HOH HOH . D 4 HOH A 87 487 42 HOH HOH . D 4 HOH A 88 488 95 HOH HOH . D 4 HOH A 89 489 152 HOH HOH . D 4 HOH A 90 490 146 HOH HOH . D 4 HOH A 91 491 108 HOH HOH . D 4 HOH A 92 492 99 HOH HOH . D 4 HOH A 93 493 133 HOH HOH . D 4 HOH A 94 494 143 HOH HOH . D 4 HOH A 95 495 142 HOH HOH . D 4 HOH A 96 496 20 HOH HOH . D 4 HOH A 97 497 71 HOH HOH . D 4 HOH A 98 498 51 HOH HOH . D 4 HOH A 99 499 132 HOH HOH . D 4 HOH A 100 500 11 HOH HOH . D 4 HOH A 101 501 102 HOH HOH . D 4 HOH A 102 502 93 HOH HOH . D 4 HOH A 103 503 58 HOH HOH . D 4 HOH A 104 504 87 HOH HOH . D 4 HOH A 105 505 35 HOH HOH . D 4 HOH A 106 506 2 HOH HOH . D 4 HOH A 107 507 141 HOH HOH . D 4 HOH A 108 508 15 HOH HOH . D 4 HOH A 109 509 100 HOH HOH . D 4 HOH A 110 510 149 HOH HOH . D 4 HOH A 111 511 39 HOH HOH . D 4 HOH A 112 512 140 HOH HOH . D 4 HOH A 113 513 137 HOH HOH . D 4 HOH A 114 514 138 HOH HOH . D 4 HOH A 115 515 84 HOH HOH . D 4 HOH A 116 516 26 HOH HOH . D 4 HOH A 117 517 91 HOH HOH . D 4 HOH A 118 518 86 HOH HOH . D 4 HOH A 119 519 145 HOH HOH . D 4 HOH A 120 520 66 HOH HOH . D 4 HOH A 121 521 36 HOH HOH . D 4 HOH A 122 522 103 HOH HOH . D 4 HOH A 123 523 47 HOH HOH . D 4 HOH A 124 524 96 HOH HOH . D 4 HOH A 125 525 78 HOH HOH . D 4 HOH A 126 526 151 HOH HOH . D 4 HOH A 127 527 28 HOH HOH . D 4 HOH A 128 528 49 HOH HOH . D 4 HOH A 129 529 18 HOH HOH . D 4 HOH A 130 530 150 HOH HOH . D 4 HOH A 131 531 148 HOH HOH . D 4 HOH A 132 532 44 HOH HOH . D 4 HOH A 133 533 123 HOH HOH . D 4 HOH A 134 534 55 HOH HOH . D 4 HOH A 135 535 29 HOH HOH . D 4 HOH A 136 536 21 HOH HOH . D 4 HOH A 137 537 144 HOH HOH . D 4 HOH A 138 538 50 HOH HOH . D 4 HOH A 139 539 46 HOH HOH . D 4 HOH A 140 540 8 HOH HOH . D 4 HOH A 141 541 124 HOH HOH . D 4 HOH A 142 542 156 HOH HOH . D 4 HOH A 143 543 126 HOH HOH . D 4 HOH A 144 544 116 HOH HOH . D 4 HOH A 145 545 154 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -5.314 31.632 22.762 1 69.16 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . C 3 -4.352 31.631 21.691 1 60.82 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . C 3 -5.132 32.832 23.701 1 65.22 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . C 3 -5.127 32.364 25.06 1 63.5 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . C 3 -6.259 33.859 23.536 1 63.55 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . C 3 -6.918 33.756 22.261 1 60.28 ? O3 GOL 302 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 218 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #