data_4ZE1 # _model_server_result.job_id XySFukhVudNrd2JnWS5dYA _model_server_result.datetime_utc '2024-11-13 00:27:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ze1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4ZE1 # _exptl.entry_id 4ZE1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.43 _cell.angle_gamma 90 _cell.entry_id 4ZE1 _cell.length_a 78.79 _cell.length_b 67.75 _cell.length_c 81.06 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZE1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 470 A CYS 470 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C NBD X2N . A X2N 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 4ZE1 _atom_sites.fract_transf_matrix[1][1] 0.012692 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002108 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01476 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012506 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 601 HEM HEM . C 3 X2N A 1 602 701 X2N X2N . D 4 HOH A 1 801 801 HOH HOH . D 4 HOH A 2 802 802 HOH HOH . D 4 HOH A 3 803 803 HOH HOH . D 4 HOH A 4 804 804 HOH HOH . D 4 HOH A 5 805 805 HOH HOH . D 4 HOH A 6 806 806 HOH HOH . D 4 HOH A 7 807 807 HOH HOH . D 4 HOH A 8 808 808 HOH HOH . D 4 HOH A 9 809 809 HOH HOH . D 4 HOH A 10 810 810 HOH HOH . D 4 HOH A 11 811 811 HOH HOH . D 4 HOH A 12 812 812 HOH HOH . D 4 HOH A 13 813 813 HOH HOH . D 4 HOH A 14 814 814 HOH HOH . D 4 HOH A 15 815 815 HOH HOH . D 4 HOH A 16 816 816 HOH HOH . D 4 HOH A 17 817 817 HOH HOH . D 4 HOH A 18 818 818 HOH HOH . D 4 HOH A 19 819 819 HOH HOH . D 4 HOH A 20 820 820 HOH HOH . D 4 HOH A 21 821 821 HOH HOH . D 4 HOH A 22 822 822 HOH HOH . D 4 HOH A 23 823 823 HOH HOH . D 4 HOH A 24 824 824 HOH HOH . D 4 HOH A 25 825 825 HOH HOH . D 4 HOH A 26 826 826 HOH HOH . D 4 HOH A 27 827 827 HOH HOH . D 4 HOH A 28 828 828 HOH HOH . D 4 HOH A 29 829 829 HOH HOH . D 4 HOH A 30 830 830 HOH HOH . D 4 HOH A 31 831 831 HOH HOH . D 4 HOH A 32 832 832 HOH HOH . D 4 HOH A 33 833 833 HOH HOH . D 4 HOH A 34 834 834 HOH HOH . D 4 HOH A 35 835 835 HOH HOH . D 4 HOH A 36 836 836 HOH HOH . D 4 HOH A 37 837 837 HOH HOH . D 4 HOH A 38 838 838 HOH HOH . D 4 HOH A 39 839 839 HOH HOH . D 4 HOH A 40 840 840 HOH HOH . D 4 HOH A 41 841 841 HOH HOH . D 4 HOH A 42 842 842 HOH HOH . D 4 HOH A 43 843 843 HOH HOH . D 4 HOH A 44 844 844 HOH HOH . D 4 HOH A 45 845 845 HOH HOH . D 4 HOH A 46 846 846 HOH HOH . D 4 HOH A 47 847 847 HOH HOH . D 4 HOH A 48 848 848 HOH HOH . D 4 HOH A 49 849 849 HOH HOH . D 4 HOH A 50 850 850 HOH HOH . D 4 HOH A 51 851 851 HOH HOH . D 4 HOH A 52 852 852 HOH HOH . D 4 HOH A 53 853 853 HOH HOH . D 4 HOH A 54 854 854 HOH HOH . D 4 HOH A 55 855 855 HOH HOH . D 4 HOH A 56 856 856 HOH HOH . D 4 HOH A 57 857 857 HOH HOH . D 4 HOH A 58 858 858 HOH HOH . D 4 HOH A 59 859 859 HOH HOH . D 4 HOH A 60 860 860 HOH HOH . D 4 HOH A 61 861 861 HOH HOH . D 4 HOH A 62 862 862 HOH HOH . D 4 HOH A 63 863 863 HOH HOH . D 4 HOH A 64 864 864 HOH HOH . D 4 HOH A 65 865 865 HOH HOH . D 4 HOH A 66 866 866 HOH HOH . D 4 HOH A 67 867 867 HOH HOH . D 4 HOH A 68 868 868 HOH HOH . D 4 HOH A 69 869 869 HOH HOH . D 4 HOH A 70 870 870 HOH HOH . D 4 HOH A 71 871 871 HOH HOH . D 4 HOH A 72 872 872 HOH HOH . D 4 HOH A 73 873 873 HOH HOH . D 4 HOH A 74 874 874 HOH HOH . D 4 HOH A 75 875 875 HOH HOH . D 4 HOH A 76 876 876 HOH HOH . D 4 HOH A 77 877 877 HOH HOH . D 4 HOH A 78 878 878 HOH HOH . D 4 HOH A 79 879 879 HOH HOH . D 4 HOH A 80 880 880 HOH HOH . D 4 HOH A 81 881 881 HOH HOH . D 4 HOH A 82 882 882 HOH HOH . D 4 HOH A 83 883 883 HOH HOH . D 4 HOH A 84 884 884 HOH HOH . D 4 HOH A 85 885 885 HOH HOH . D 4 HOH A 86 886 886 HOH HOH . D 4 HOH A 87 887 887 HOH HOH . D 4 HOH A 88 888 888 HOH HOH . D 4 HOH A 89 889 889 HOH HOH . D 4 HOH A 90 890 890 HOH HOH . D 4 HOH A 91 891 891 HOH HOH . D 4 HOH A 92 892 892 HOH HOH . D 4 HOH A 93 893 893 HOH HOH . D 4 HOH A 94 894 894 HOH HOH . D 4 HOH A 95 895 895 HOH HOH . D 4 HOH A 96 896 896 HOH HOH . D 4 HOH A 97 897 897 HOH HOH . D 4 HOH A 98 898 898 HOH HOH . D 4 HOH A 99 899 899 HOH HOH . D 4 HOH A 100 900 900 HOH HOH . D 4 HOH A 101 901 901 HOH HOH . D 4 HOH A 102 902 902 HOH HOH . D 4 HOH A 103 903 903 HOH HOH . D 4 HOH A 104 904 904 HOH HOH . D 4 HOH A 105 905 905 HOH HOH . D 4 HOH A 106 906 906 HOH HOH . D 4 HOH A 107 907 907 HOH HOH . D 4 HOH A 108 908 908 HOH HOH . D 4 HOH A 109 909 909 HOH HOH . D 4 HOH A 110 910 910 HOH HOH . D 4 HOH A 111 911 911 HOH HOH . D 4 HOH A 112 912 912 HOH HOH . D 4 HOH A 113 913 913 HOH HOH . D 4 HOH A 114 914 914 HOH HOH . D 4 HOH A 115 915 915 HOH HOH . D 4 HOH A 116 916 916 HOH HOH . D 4 HOH A 117 917 917 HOH HOH . D 4 HOH A 118 918 918 HOH HOH . D 4 HOH A 119 919 919 HOH HOH . D 4 HOH A 120 920 920 HOH HOH . D 4 HOH A 121 921 921 HOH HOH . D 4 HOH A 122 922 922 HOH HOH . D 4 HOH A 123 923 923 HOH HOH . D 4 HOH A 124 924 924 HOH HOH . D 4 HOH A 125 925 925 HOH HOH . D 4 HOH A 126 926 926 HOH HOH . D 4 HOH A 127 927 927 HOH HOH . D 4 HOH A 128 928 928 HOH HOH . D 4 HOH A 129 929 929 HOH HOH . D 4 HOH A 130 930 930 HOH HOH . D 4 HOH A 131 931 931 HOH HOH . D 4 HOH A 132 932 932 HOH HOH . D 4 HOH A 133 933 933 HOH HOH . D 4 HOH A 134 934 934 HOH HOH . D 4 HOH A 135 935 935 HOH HOH . D 4 HOH A 136 936 936 HOH HOH . D 4 HOH A 137 937 937 HOH HOH . D 4 HOH A 138 938 938 HOH HOH . D 4 HOH A 139 939 939 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 14 8.779 98.403 1 33.5 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . B 2 13.208 11.813 102.111 1 32.4 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . B 2 15.736 15.226 99.829 1 35.42 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . B 2 16.361 12.318 96.019 1 34.04 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . B 2 13.581 9.309 99.582 1 35.58 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . B 2 12.801 8.585 100.569 1 33.98 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . B 2 12.594 9.422 101.594 1 32.57 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . B 2 13.216 10.705 101.285 1 36.33 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . B 2 11.807 9.118 102.872 1 29.72 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . B 2 12.329 7.112 100.449 1 30.43 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . B 2 10.914 7.026 99.857 1 32.27 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . B 2 10.356 5.614 99.912 1 35.3 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . B 2 9.191 5.392 99.449 1 36.17 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . B 2 11.068 4.706 100.422 1 33.96 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . B 2 13.864 12.985 101.852 1 33.41 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . B 2 13.994 14.109 102.754 1 33.48 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . B 2 14.693 15.062 102.108 1 33.21 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . B 2 15.033 14.544 100.798 1 33.24 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . B 2 13.4 14.092 104.178 1 34.82 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . B 2 15.154 16.467 102.559 1 35.76 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . B 2 14.965 16.927 103.8 1 40.34 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . B 2 16.146 14.744 98.617 1 32.37 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . B 2 17.046 15.407 97.704 1 33.5 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . B 2 17.209 14.588 96.637 1 35.28 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . B 2 16.443 13.392 96.87 1 32.57 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . B 2 17.638 16.817 97.943 1 32.43 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . B 2 18.067 14.794 95.364 1 36.98 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . B 2 19.041 15.711 95.278 1 39.94 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . B 2 15.839 11.075 96.32 1 35.27 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . B 2 15.988 9.898 95.495 1 36.74 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . B 2 15.249 8.781 96.236 1 35.38 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . B 2 14.733 9.405 97.433 1 33.16 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . B 2 16.725 9.79 94.133 1 34.01 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . B 2 15.122 7.317 95.759 1 37.71 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . B 2 13.677 6.876 95.575 1 34.97 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . B 2 13.633 5.379 95.351 1 38.46 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . B 2 14.719 4.731 95.24 1 38.27 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . B 2 12.503 4.835 95.295 1 39.44 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . B 2 13.816 10.611 100.044 1 34.61 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . B 2 14.505 13.289 100.673 1 32.55 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . B 2 15.804 13.504 98.086 1 34.14 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . B 2 15.1 10.735 97.445 1 35.6 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . B 2 14.883 12.015 99.088 1 31.72 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 43 #