data_4ZE2 # _model_server_result.job_id 7B8EiLfjbZHu1rtMAGvX-Q _model_server_result.datetime_utc '2024-11-05 04:50:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ze2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 4ZE2 # _exptl.entry_id 4ZE2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 705.633 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(2R)-butan-2-yl]-4-{4-[4-(4-{[(2R,4S)-2-(2,4-dichlorophenyl)-2-(1H-1,2,4-triazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy}phenyl)piperazin-1-yl]phenyl}-2,4-dihydro-3H-1,2,4-triazol-3-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.88 _cell.angle_gamma 90 _cell.entry_id 4ZE2 _cell.length_a 77.83 _cell.length_b 66.67 _cell.length_c 81.01 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZE2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 470 A CYS 470 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N39 1YN . A 1YN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? # _chem_comp.formula 'C35 H38 Cl2 N8 O4' _chem_comp.formula_weight 705.633 _chem_comp.id 1YN _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(2R)-butan-2-yl]-4-{4-[4-(4-{[(2R,4S)-2-(2,4-dichlorophenyl)-2-(1H-1,2,4-triazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy}phenyl)piperazin-1-yl]phenyl}-2,4-dihydro-3H-1,2,4-triazol-3-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Itraconazole # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL8 C45 1YN sing 1 n n C45 C44 1YN doub 2 n y C45 C46 1YN sing 3 n y C44 C43 1YN sing 4 n y C46 C47 1YN doub 5 n y C43 CL9 1YN sing 6 n n C43 C42 1YN doub 7 n y C47 C42 1YN sing 8 n y C42 C34 1YN sing 9 n n O33 C32 1YN sing 10 n n O33 C34 1YN sing 11 n n C32 C31 1YN sing 12 n n C34 O35 1YN sing 13 n n C34 C36 1YN sing 14 n n C31 O35 1YN sing 15 n n C31 C30 1YN sing 16 n n C36 N37 1YN sing 17 n n O29 C30 1YN sing 18 n n O29 C26 1YN sing 19 n n N37 N41 1YN sing 20 n y N37 C38 1YN sing 21 n y N41 C40 1YN doub 22 n y C25 C26 1YN doub 23 n y C25 C24 1YN sing 24 n y C26 C27 1YN sing 25 n y C40 N39 1YN sing 26 n y C01 C02 1YN sing 27 n n C38 N39 1YN doub 28 n y C24 C23 1YN doub 29 n y C27 C28 1YN doub 30 n y C23 C28 1YN sing 31 n y C23 N20 1YN sing 32 n n C02 C03 1YN sing 33 n n N20 C19 1YN sing 34 n n N20 C21 1YN sing 35 n n C18 C19 1YN sing 36 n n C18 N17 1YN sing 37 n n C12 C13 1YN doub 38 n y C12 C11 1YN sing 39 n y C13 C14 1YN sing 40 n y C22 C21 1YN sing 41 n n C22 N17 1YN sing 42 n n N10 C09 1YN doub 43 n n N10 N05 1YN sing 44 n n C09 N08 1YN sing 45 n n C03 N05 1YN sing 46 n n C03 C04 1YN sing 47 n n N05 C06 1YN sing 48 n n C11 N08 1YN sing 49 n n C11 C16 1YN doub 50 n y O07 C06 1YN doub 51 n n C14 N17 1YN sing 52 n n C14 C15 1YN doub 53 n y N08 C06 1YN sing 54 n n C16 C15 1YN sing 55 n y C12 H1 1YN sing 56 n n C01 H2 1YN sing 57 n n C01 H3 1YN sing 58 n n C01 H4 1YN sing 59 n n C02 H5 1YN sing 60 n n C02 H6 1YN sing 61 n n C03 H7 1YN sing 62 n n C04 H8 1YN sing 63 n n C04 H9 1YN sing 64 n n C04 H10 1YN sing 65 n n C09 H11 1YN sing 66 n n C13 H12 1YN sing 67 n n C15 H13 1YN sing 68 n n C16 H14 1YN sing 69 n n C18 H15 1YN sing 70 n n C18 H16 1YN sing 71 n n C19 H17 1YN sing 72 n n C19 H18 1YN sing 73 n n C21 H19 1YN sing 74 n n C21 H20 1YN sing 75 n n C22 H21 1YN sing 76 n n C22 H22 1YN sing 77 n n C24 H23 1YN sing 78 n n C25 H24 1YN sing 79 n n C27 H25 1YN sing 80 n n C28 H26 1YN sing 81 n n C30 H27 1YN sing 82 n n C30 H28 1YN sing 83 n n C31 H29 1YN sing 84 n n C32 H30 1YN sing 85 n n C32 H31 1YN sing 86 n n C36 H32 1YN sing 87 n n C36 H33 1YN sing 88 n n C38 H34 1YN sing 89 n n C40 H35 1YN sing 90 n n C44 H36 1YN sing 91 n n C46 H37 1YN sing 92 n n C47 H38 1YN sing 93 n n # _atom_sites.entry_id 4ZE2 _atom_sites.fract_transf_matrix[1][1] 0.012849 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002007 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014999 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012494 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 601 HEM HEM . C 3 1YN A 1 602 701 1YN 1YN . D 4 HOH A 1 801 801 HOH HOH . D 4 HOH A 2 802 802 HOH HOH . D 4 HOH A 3 803 803 HOH HOH . D 4 HOH A 4 804 804 HOH HOH . D 4 HOH A 5 805 805 HOH HOH . D 4 HOH A 6 806 806 HOH HOH . D 4 HOH A 7 807 807 HOH HOH . D 4 HOH A 8 808 808 HOH HOH . D 4 HOH A 9 809 809 HOH HOH . D 4 HOH A 10 810 810 HOH HOH . D 4 HOH A 11 811 811 HOH HOH . D 4 HOH A 12 812 812 HOH HOH . D 4 HOH A 13 813 813 HOH HOH . D 4 HOH A 14 814 814 HOH HOH . D 4 HOH A 15 815 815 HOH HOH . D 4 HOH A 16 816 816 HOH HOH . D 4 HOH A 17 817 817 HOH HOH . D 4 HOH A 18 818 818 HOH HOH . D 4 HOH A 19 819 819 HOH HOH . D 4 HOH A 20 820 820 HOH HOH . D 4 HOH A 21 821 821 HOH HOH . D 4 HOH A 22 822 822 HOH HOH . D 4 HOH A 23 823 823 HOH HOH . D 4 HOH A 24 824 824 HOH HOH . D 4 HOH A 25 825 825 HOH HOH . D 4 HOH A 26 826 826 HOH HOH . D 4 HOH A 27 827 827 HOH HOH . D 4 HOH A 28 828 828 HOH HOH . D 4 HOH A 29 829 829 HOH HOH . D 4 HOH A 30 830 830 HOH HOH . D 4 HOH A 31 831 831 HOH HOH . D 4 HOH A 32 832 832 HOH HOH . D 4 HOH A 33 833 833 HOH HOH . D 4 HOH A 34 834 834 HOH HOH . D 4 HOH A 35 835 835 HOH HOH . D 4 HOH A 36 836 836 HOH HOH . D 4 HOH A 37 837 837 HOH HOH . D 4 HOH A 38 838 838 HOH HOH . D 4 HOH A 39 839 839 HOH HOH . D 4 HOH A 40 840 840 HOH HOH . D 4 HOH A 41 841 841 HOH HOH . D 4 HOH A 42 842 842 HOH HOH . D 4 HOH A 43 843 843 HOH HOH . D 4 HOH A 44 844 844 HOH HOH . D 4 HOH A 45 845 845 HOH HOH . D 4 HOH A 46 846 846 HOH HOH . D 4 HOH A 47 847 847 HOH HOH . D 4 HOH A 48 848 848 HOH HOH . D 4 HOH A 49 849 849 HOH HOH . D 4 HOH A 50 850 850 HOH HOH . D 4 HOH A 51 851 851 HOH HOH . D 4 HOH A 52 852 852 HOH HOH . D 4 HOH A 53 853 853 HOH HOH . D 4 HOH A 54 854 854 HOH HOH . D 4 HOH A 55 855 855 HOH HOH . D 4 HOH A 56 856 856 HOH HOH . D 4 HOH A 57 857 857 HOH HOH . D 4 HOH A 58 858 858 HOH HOH . D 4 HOH A 59 859 859 HOH HOH . D 4 HOH A 60 860 860 HOH HOH . D 4 HOH A 61 861 861 HOH HOH . D 4 HOH A 62 862 862 HOH HOH . D 4 HOH A 63 863 863 HOH HOH . D 4 HOH A 64 864 864 HOH HOH . D 4 HOH A 65 865 865 HOH HOH . D 4 HOH A 66 866 866 HOH HOH . D 4 HOH A 67 867 867 HOH HOH . D 4 HOH A 68 868 868 HOH HOH . D 4 HOH A 69 869 869 HOH HOH . D 4 HOH A 70 870 870 HOH HOH . D 4 HOH A 71 871 871 HOH HOH . D 4 HOH A 72 872 872 HOH HOH . D 4 HOH A 73 873 873 HOH HOH . D 4 HOH A 74 874 874 HOH HOH . D 4 HOH A 75 875 875 HOH HOH . D 4 HOH A 76 876 876 HOH HOH . D 4 HOH A 77 877 877 HOH HOH . D 4 HOH A 78 878 878 HOH HOH . D 4 HOH A 79 879 879 HOH HOH . D 4 HOH A 80 880 880 HOH HOH . D 4 HOH A 81 881 881 HOH HOH . D 4 HOH A 82 882 882 HOH HOH . D 4 HOH A 83 883 883 HOH HOH . D 4 HOH A 84 884 884 HOH HOH . D 4 HOH A 85 885 885 HOH HOH . D 4 HOH A 86 886 886 HOH HOH . D 4 HOH A 87 887 887 HOH HOH . D 4 HOH A 88 888 888 HOH HOH . D 4 HOH A 89 889 889 HOH HOH . D 4 HOH A 90 890 890 HOH HOH . D 4 HOH A 91 891 891 HOH HOH . D 4 HOH A 92 892 892 HOH HOH . D 4 HOH A 93 893 893 HOH HOH . D 4 HOH A 94 894 894 HOH HOH . D 4 HOH A 95 895 895 HOH HOH . D 4 HOH A 96 896 896 HOH HOH . D 4 HOH A 97 897 897 HOH HOH . D 4 HOH A 98 898 898 HOH HOH . D 4 HOH A 99 899 899 HOH HOH . D 4 HOH A 100 900 900 HOH HOH . D 4 HOH A 101 901 901 HOH HOH . D 4 HOH A 102 902 902 HOH HOH . D 4 HOH A 103 903 903 HOH HOH . D 4 HOH A 104 904 904 HOH HOH . D 4 HOH A 105 905 905 HOH HOH . D 4 HOH A 106 906 906 HOH HOH . D 4 HOH A 107 907 907 HOH HOH . D 4 HOH A 108 908 908 HOH HOH . D 4 HOH A 109 909 909 HOH HOH . D 4 HOH A 110 910 910 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 1YN . . . C 3 86.961 13.952 20.319 1 53.5 ? C12 1YN 602 A 1 HETATM 2 C C11 1YN . . . C 3 86.101 12.929 20.676 1 54.22 ? C11 1YN 602 A 1 HETATM 3 C C01 1YN . . . C 3 80.711 13.79 18.614 1 65.22 ? C01 1YN 602 A 1 HETATM 4 C C02 1YN . . . C 3 80.397 14.408 19.978 1 64.48 ? C02 1YN 602 A 1 HETATM 5 C C03 1YN . . . C 3 81.638 15.055 20.643 1 64.13 ? C03 1YN 602 A 1 HETATM 6 C C04 1YN . . . C 3 81.331 15.533 22.055 1 63.56 ? C04 1YN 602 A 1 HETATM 7 N N05 1YN . . . C 3 82.753 14.083 20.719 1 62.65 ? N05 1YN 602 A 1 HETATM 8 C C06 1YN . . . C 3 84.064 14.392 20.56 1 62.9 ? C06 1YN 602 A 1 HETATM 9 O O07 1YN . . . C 3 84.566 15.478 20.328 1 64.33 ? O07 1YN 602 A 1 HETATM 10 N N08 1YN . . . C 3 84.679 13.161 20.757 1 60.75 ? N08 1YN 602 A 1 HETATM 11 C C09 1YN . . . C 3 83.73 12.198 21.014 1 57.83 ? C09 1YN 602 A 1 HETATM 12 N N10 1YN . . . C 3 82.508 12.761 20.995 1 59.15 ? N10 1YN 602 A 1 HETATM 13 C C13 1YN . . . C 3 88.322 13.722 20.232 1 52.46 ? C13 1YN 602 A 1 HETATM 14 C C14 1YN . . . C 3 88.844 12.464 20.501 1 51.81 ? C14 1YN 602 A 1 HETATM 15 C C15 1YN . . . C 3 87.974 11.451 20.885 1 59.36 ? C15 1YN 602 A 1 HETATM 16 C C16 1YN . . . C 3 86.613 11.682 20.968 1 57.88 ? C16 1YN 602 A 1 HETATM 17 N N17 1YN . . . C 3 90.192 12.204 20.325 1 50.5 ? N17 1YN 602 A 1 HETATM 18 C C18 1YN . . . C 3 91.217 13.235 20.482 1 46.51 ? C18 1YN 602 A 1 HETATM 19 C C19 1YN . . . C 3 92.369 12.959 19.536 1 46.13 ? C19 1YN 602 A 1 HETATM 20 N N20 1YN . . . C 3 92.884 11.596 19.704 1 43.75 ? N20 1YN 602 A 1 HETATM 21 C C21 1YN . . . C 3 91.852 10.56 19.646 1 47.48 ? C21 1YN 602 A 1 HETATM 22 C C22 1YN . . . C 3 90.728 10.873 20.607 1 51.42 ? C22 1YN 602 A 1 HETATM 23 C C23 1YN . . . C 3 94.073 11.302 19.075 1 42.45 ? C23 1YN 602 A 1 HETATM 24 C C24 1YN . . . C 3 94.671 12.225 18.233 1 42.86 ? C24 1YN 602 A 1 HETATM 25 C C25 1YN . . . C 3 95.888 11.953 17.636 1 44.88 ? C25 1YN 602 A 1 HETATM 26 C C26 1YN . . . C 3 96.52 10.75 17.88 1 42.4 ? C26 1YN 602 A 1 HETATM 27 C C27 1YN . . . C 3 95.934 9.817 18.714 1 41.42 ? C27 1YN 602 A 1 HETATM 28 C C28 1YN . . . C 3 94.713 10.09 19.301 1 42.49 ? C28 1YN 602 A 1 HETATM 29 O O29 1YN . . . C 3 97.711 10.517 17.241 1 43.52 ? O29 1YN 602 A 1 HETATM 30 C C30 1YN . . . C 3 98.382 9.286 17.513 1 46.47 ? C30 1YN 602 A 1 HETATM 31 C C31 1YN . . . C 3 99.426 9.086 16.458 1 40.64 ? C31 1YN 602 A 1 HETATM 32 C C32 1YN . . . C 3 98.971 9.628 15.139 1 48.63 ? C32 1YN 602 A 1 HETATM 33 O O33 1YN . . . C 3 99.293 10.993 15.225 1 47.29 ? O33 1YN 602 A 1 HETATM 34 C C34 1YN . . . C 3 100.523 11.069 15.923 1 38.9 ? C34 1YN 602 A 1 HETATM 35 O O35 1YN . . . C 3 100.599 9.888 16.726 1 41.5 ? O35 1YN 602 A 1 HETATM 36 C C36 1YN . . . C 3 100.407 12.287 16.863 1 35.98 ? C36 1YN 602 A 1 HETATM 37 N N37 1YN . . . C 3 101.738 12.625 17.328 1 36.59 ? N37 1YN 602 A 1 HETATM 38 C C38 1YN . . . C 3 102.561 11.933 18.108 1 35.29 ? C38 1YN 602 A 1 HETATM 39 N N39 1YN . . . C 3 103.684 12.579 18.3 1 32.9 ? N39 1YN 602 A 1 HETATM 40 C C40 1YN . . . C 3 103.489 13.711 17.589 1 33.33 ? C40 1YN 602 A 1 HETATM 41 N N41 1YN . . . C 3 102.333 13.796 16.976 1 35.53 ? N41 1YN 602 A 1 HETATM 42 C C42 1YN . . . C 3 101.62 11.188 14.865 1 40.71 ? C42 1YN 602 A 1 HETATM 43 C C43 1YN . . . C 3 101.654 12.257 13.964 1 42.31 ? C43 1YN 602 A 1 HETATM 44 C C44 1YN . . . C 3 102.681 12.412 13.055 1 41.26 ? C44 1YN 602 A 1 HETATM 45 C C45 1YN . . . C 3 103.681 11.469 13.018 1 40.16 ? C45 1YN 602 A 1 HETATM 46 C C46 1YN . . . C 3 103.674 10.386 13.868 1 42.35 ? C46 1YN 602 A 1 HETATM 47 C C47 1YN . . . C 3 102.65 10.255 14.788 1 40.93 ? C47 1YN 602 A 1 HETATM 48 CL CL8 1YN . . . C 3 104.984 11.668 11.876 1 43.36 ? CL8 1YN 602 A 1 HETATM 49 CL CL9 1YN . . . C 3 100.372 13.426 13.888 1 56.2 ? CL9 1YN 602 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 49 #