data_4ZE9 # _model_server_result.job_id hO4vkpM1Rk2o4Mfy-JyKdg _model_server_result.datetime_utc '2024-11-23 19:49:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ze9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 4ZE9 # _exptl.entry_id 4ZE9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.13 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-L-arabinopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZE9 _cell.length_a 77.69 _cell.length_b 114.72 _cell.length_c 109.04 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZE9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 4GL _pdbx_entity_branch_link.comp_id_2 TT7 _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B TT7 1 B 1 TT7 A 601 AGR 2 n B 4GL 2 B 2 4GL A 601 AGR # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 80 A VAL 108 1_555 A N MSE 81 A MSE 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale2 A C MSE 81 A MSE 109 1_555 A N PHE 82 A PHE 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale3 A C TRP 150 A TRP 178 1_555 A N MSE 151 A MSE 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale4 A C MSE 151 A MSE 179 1_555 A N SER 152 A SER 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale5 A C HIS 258 A HIS 286 1_555 A N MSE 259 A MSE 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 A C MSE 259 A MSE 287 1_555 A N PHE 260 A PHE 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale7 A C ASN 263 A ASN 291 1_555 A N MSE 264 A MSE 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale8 A C MSE 264 A MSE 292 1_555 A N ASN 265 A ASN 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale9 A C ILE 286 A ILE 314 1_555 A N MSE 287 A MSE 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale10 A C MSE 287 A MSE 315 1_555 A N VAL 288 A VAL 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale11 A C ALA 317 A ALA 345 1_555 A N MSE 318 A MSE 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale12 A C MSE 318 A MSE 346 1_555 A N GLU 319 A GLU 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale13 A C THR 343 A THR 371 1_555 A N MSE 344 A MSE 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale14 A C MSE 344 A MSE 372 1_555 A N GLY 345 A GLY 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale15 A C ALA 351 A ALA 379 1_555 A N MSE 352 A MSE 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale16 A C MSE 352 A MSE 380 1_555 A N PRO 353 A PRO 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.365 ? covale ? covale17 A C LEU 355 A LEU 383 1_555 A N MSE 356 A MSE 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale18 A C MSE 356 A MSE 384 1_555 A N MSE 357 A MSE 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale19 A C MSE 357 A MSE 385 1_555 A N MSE 358 A MSE 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale20 A C MSE 358 A MSE 386 1_555 A N ILE 359 A ILE 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.365 ? covale ? covale21 A C GLU 360 A GLU 388 1_555 A N MSE 361 A MSE 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale22 A C MSE 361 A MSE 389 1_555 A N TRP 362 A TRP 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale23 A C VAL 370 A VAL 398 1_555 A N MSE 371 A MSE 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale24 A C MSE 371 A MSE 399 1_555 A N LYS 372 A LYS 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale25 A C TRP 386 A TRP 414 1_555 A N MSE 387 A MSE 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale26 A C MSE 387 A MSE 415 1_555 A N ARG 388 A ARG 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale27 A C TRP 395 A TRP 423 1_555 A N MSE 396 A MSE 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale28 A C MSE 396 A MSE 424 1_555 A N THR 397 A THR 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale29 A C ARG 447 A ARG 475 1_555 A N MSE 448 A MSE 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale30 A C MSE 448 A MSE 476 1_555 A N ARG 449 A ARG 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale31 A C GLU 482 A GLU 510 1_555 A N MSE 483 A MSE 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale32 A C MSE 483 A MSE 511 1_555 A N MSE 484 A MSE 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale33 A C MSE 484 A MSE 512 1_555 A N GLU 485 A GLU 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale34 C O2 ARA . A ARA 601 1_555 B P4 TT7 . B TT7 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.583 sing covale ? covale35 B O2 TT7 . B TT7 1 1_555 B C1 4GL . B 4GL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 sing # _chem_comp.formula 'C5 H10 O5' _chem_comp.formula_weight 150.13 _chem_comp.id ARA _chem_comp.mon_nstd_flag . _chem_comp.name alpha-L-arabinopyranose _chem_comp.type 'l-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-L-arabinose;L-arabinose;arabinose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ARA sing 37 n n C1 O1 ARA sing 38 n n C1 O5 ARA sing 39 n n C1 H1 ARA sing 40 n n C2 C3 ARA sing 41 n n C2 O2 ARA sing 42 n n C2 H2 ARA sing 43 n n C3 C4 ARA sing 44 n n C3 O3 ARA sing 45 n n C3 H3 ARA sing 46 n n C4 C5 ARA sing 47 n n C4 O4 ARA sing 48 n n C4 H4 ARA sing 49 n n C5 O5 ARA sing 50 n n C5 H51 ARA sing 51 n n C5 H52 ARA sing 52 n n O1 HO1 ARA sing 53 n n O2 HO2 ARA sing 54 n n O3 HO3 ARA sing 55 n n O4 HO4 ARA sing 56 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version ARA LArapa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 ARA a-L-arabinopyranose 'COMMON NAME' GMML 1 ARA a-L-Arap 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 ARA Ara 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4ZE9 _atom_sites.fract_transf_matrix[1][1] 0.012872 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008717 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009171 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ARA A 1 601 601 ARA AGR . D 4 HOH A 1 701 749 HOH HOH . D 4 HOH A 2 702 730 HOH HOH . D 4 HOH A 3 703 737 HOH HOH . D 4 HOH A 4 704 725 HOH HOH . D 4 HOH A 5 705 739 HOH HOH . D 4 HOH A 6 706 729 HOH HOH . D 4 HOH A 7 707 731 HOH HOH . D 4 HOH A 8 708 728 HOH HOH . D 4 HOH A 9 709 746 HOH HOH . D 4 HOH A 10 710 747 HOH HOH . D 4 HOH A 11 711 736 HOH HOH . D 4 HOH A 12 712 748 HOH HOH . D 4 HOH A 13 713 743 HOH HOH . D 4 HOH A 14 714 735 HOH HOH . D 4 HOH A 15 715 732 HOH HOH . D 4 HOH A 16 716 734 HOH HOH . D 4 HOH A 17 717 718 HOH HOH . D 4 HOH A 18 718 740 HOH HOH . D 4 HOH A 19 719 744 HOH HOH . D 4 HOH A 20 720 733 HOH HOH . D 4 HOH A 21 721 722 HOH HOH . D 4 HOH A 22 722 711 HOH HOH . D 4 HOH A 23 723 742 HOH HOH . D 4 HOH A 24 724 738 HOH HOH . D 4 HOH A 25 725 741 HOH HOH . D 4 HOH A 26 726 710 HOH HOH . D 4 HOH A 27 727 716 HOH HOH . D 4 HOH A 28 728 704 HOH HOH . D 4 HOH A 29 729 701 HOH HOH . D 4 HOH A 30 730 745 HOH HOH . D 4 HOH A 31 731 723 HOH HOH . D 4 HOH A 32 732 727 HOH HOH . D 4 HOH A 33 733 719 HOH HOH . D 4 HOH A 34 734 708 HOH HOH . D 4 HOH A 35 735 713 HOH HOH . D 4 HOH A 36 736 712 HOH HOH . D 4 HOH A 37 737 703 HOH HOH . D 4 HOH A 38 738 705 HOH HOH . D 4 HOH A 39 739 726 HOH HOH . D 4 HOH A 40 740 706 HOH HOH . D 4 HOH A 41 741 702 HOH HOH . D 4 HOH A 42 742 707 HOH HOH . D 4 HOH A 43 743 715 HOH HOH . D 4 HOH A 44 744 717 HOH HOH . D 4 HOH A 45 745 721 HOH HOH . D 4 HOH A 46 746 714 HOH HOH . D 4 HOH A 47 747 720 HOH HOH . D 4 HOH A 48 748 709 HOH HOH . D 4 HOH A 49 749 724 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ARA . . . C 3 16.458 27.295 16.569 1 33.85 ? C1 ARA 601 A 1 HETATM 2 C C2 ARA . . . C 3 15.86 27.71 17.892 1 33.78 ? C2 ARA 601 A 1 HETATM 3 C C3 ARA . . . C 3 14.522 28.168 17.755 1 33 ? C3 ARA 601 A 1 HETATM 4 C C4 ARA . . . C 3 14.284 29.107 16.712 1 30.53 ? C4 ARA 601 A 1 HETATM 5 C C5 ARA . . . C 3 15 28.815 15.403 1 30.12 ? C5 ARA 601 A 1 HETATM 6 O O1 ARA . . . C 3 17.804 27.1 16.761 1 37.72 ? O1 ARA 601 A 1 HETATM 7 O O2 ARA . . . C 3 15.897 26.605 18.845 1 34.39 ? O2 ARA 601 A 1 HETATM 8 O O3 ARA . . . C 3 14.079 28.696 19.059 1 34.53 ? O3 ARA 601 A 1 HETATM 9 O O4 ARA . . . C 3 14.628 30.429 17.122 1 29.34 ? O4 ARA 601 A 1 HETATM 10 O O5 ARA . . . C 3 16.304 28.281 15.563 1 31.47 ? O5 ARA 601 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #