data_4ZEE # _model_server_result.job_id pupoB-yUbhZIDJsH5DHToA _model_server_result.datetime_utc '2024-11-23 04:32:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zee # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":412}' # _entry.id 4ZEE # _exptl.entry_id 4ZEE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 309.267 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CYCLOHEXANE-1(R),2(R)-DIAMINE-PLATINUM(II) _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZEE _cell.length_a 77.377 _cell.length_b 77.377 _cell.length_c 37.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZEE _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc1 A ND1 HIS 15 A HIS 15 1_555 N PT1 CPT . A CPT 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc2 A OD2 ASP 119 A ASP 119 1_555 M PT 1PT . A 1PT 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? # _chem_comp.formula 'C6 H14 N2 Pt 2' _chem_comp.formula_weight 309.267 _chem_comp.id 1PT _chem_comp.mon_nstd_flag . _chem_comp.name CYCLOHEXANE-1(R),2(R)-DIAMINE-PLATINUM(II) _chem_comp.type non-polymer _chem_comp.pdbx_synonyms OXALIPLATIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PT N1 1PT sing 1 n n PT N2 1PT sing 2 n n N1 C1 1PT sing 3 n n N1 H11 1PT sing 4 n n N1 H12 1PT sing 5 n n N2 C2 1PT sing 6 n n N2 H21 1PT sing 7 n n N2 H22 1PT sing 8 n n C1 C2 1PT sing 9 n n C1 C6 1PT sing 10 n n C1 H1 1PT sing 11 n n C2 C3 1PT sing 12 n n C2 H2 1PT sing 13 n n C3 C4 1PT sing 14 n n C3 H31 1PT sing 15 n n C3 H32 1PT sing 16 n n C4 C5 1PT sing 17 n n C4 H41 1PT sing 18 n n C4 H42 1PT sing 19 n n C5 C6 1PT sing 20 n n C5 H51 1PT sing 21 n n C5 H52 1PT sing 22 n n C6 H61 1PT sing 23 n n C6 H62 1PT sing 24 n n # _atom_sites.entry_id 4ZEE _atom_sites.fract_transf_matrix[1][1] 0.012924 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012924 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026596 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO3 A 1 401 401 NO3 NO3 . C 2 NO3 A 1 402 403 NO3 NO3 . D 2 NO3 A 1 403 404 NO3 NO3 . E 2 NO3 A 1 404 405 NO3 NO3 . F 2 NO3 A 1 405 406 NO3 NO3 . G 2 NO3 A 1 406 407 NO3 NO3 . H 2 NO3 A 1 407 408 NO3 NO3 . I 2 NO3 A 1 408 409 NO3 NO3 . J 2 NO3 A 1 409 410 NO3 NO3 . K 3 EDO A 1 410 411 EDO EDO . L 3 EDO A 1 411 412 EDO EDO . M 4 1PT A 1 412 210 1PT 1PT . N 5 CPT A 1 413 1 CPT CPT . O 6 HOH A 1 501 115 HOH HOH . O 6 HOH A 2 502 113 HOH HOH . O 6 HOH A 3 503 226 HOH HOH . O 6 HOH A 4 504 114 HOH HOH . O 6 HOH A 5 505 301 HOH HOH . O 6 HOH A 6 506 127 HOH HOH . O 6 HOH A 7 507 22 HOH HOH . O 6 HOH A 8 508 193 HOH HOH . O 6 HOH A 9 509 203 HOH HOH . O 6 HOH A 10 510 72 HOH HOH . O 6 HOH A 11 511 4 HOH HOH . O 6 HOH A 12 512 129 HOH HOH . O 6 HOH A 13 513 59 HOH HOH . O 6 HOH A 14 514 35 HOH HOH . O 6 HOH A 15 515 40 HOH HOH . O 6 HOH A 16 516 230 HOH HOH . O 6 HOH A 17 517 155 HOH HOH . O 6 HOH A 18 518 208 HOH HOH . O 6 HOH A 19 519 179 HOH HOH . O 6 HOH A 20 520 204 HOH HOH . O 6 HOH A 21 521 218 HOH HOH . O 6 HOH A 22 522 10 HOH HOH . O 6 HOH A 23 523 168 HOH HOH . O 6 HOH A 24 524 16 HOH HOH . O 6 HOH A 25 525 184 HOH HOH . O 6 HOH A 26 526 15 HOH HOH . O 6 HOH A 27 527 224 HOH HOH . O 6 HOH A 28 528 14 HOH HOH . O 6 HOH A 29 529 158 HOH HOH . O 6 HOH A 30 530 51 HOH HOH . O 6 HOH A 31 531 220 HOH HOH . O 6 HOH A 32 532 23 HOH HOH . O 6 HOH A 33 533 21 HOH HOH . O 6 HOH A 34 534 229 HOH HOH . O 6 HOH A 35 535 49 HOH HOH . O 6 HOH A 36 536 119 HOH HOH . O 6 HOH A 37 537 234 HOH HOH . O 6 HOH A 38 538 211 HOH HOH . O 6 HOH A 39 539 181 HOH HOH . O 6 HOH A 40 540 18 HOH HOH . O 6 HOH A 41 541 42 HOH HOH . O 6 HOH A 42 542 172 HOH HOH . O 6 HOH A 43 543 62 HOH HOH . O 6 HOH A 44 544 73 HOH HOH . O 6 HOH A 45 545 201 HOH HOH . O 6 HOH A 46 546 9 HOH HOH . O 6 HOH A 47 547 178 HOH HOH . O 6 HOH A 48 548 1 HOH HOH . O 6 HOH A 49 549 19 HOH HOH . O 6 HOH A 50 550 76 HOH HOH . O 6 HOH A 51 551 161 HOH HOH . O 6 HOH A 52 552 187 HOH HOH . O 6 HOH A 53 553 217 HOH HOH . O 6 HOH A 54 554 26 HOH HOH . O 6 HOH A 55 555 170 HOH HOH . O 6 HOH A 56 556 27 HOH HOH . O 6 HOH A 57 557 33 HOH HOH . O 6 HOH A 58 558 3 HOH HOH . O 6 HOH A 59 559 198 HOH HOH . O 6 HOH A 60 560 163 HOH HOH . O 6 HOH A 61 561 43 HOH HOH . O 6 HOH A 62 562 196 HOH HOH . O 6 HOH A 63 563 32 HOH HOH . O 6 HOH A 64 564 13 HOH HOH . O 6 HOH A 65 565 52 HOH HOH . O 6 HOH A 66 566 5 HOH HOH . O 6 HOH A 67 567 38 HOH HOH . O 6 HOH A 68 568 55 HOH HOH . O 6 HOH A 69 569 24 HOH HOH . O 6 HOH A 70 570 64 HOH HOH . O 6 HOH A 71 571 48 HOH HOH . O 6 HOH A 72 572 221 HOH HOH . O 6 HOH A 73 573 47 HOH HOH . O 6 HOH A 74 574 171 HOH HOH . O 6 HOH A 75 575 176 HOH HOH . O 6 HOH A 76 576 177 HOH HOH . O 6 HOH A 77 577 199 HOH HOH . O 6 HOH A 78 578 167 HOH HOH . O 6 HOH A 79 579 174 HOH HOH . O 6 HOH A 80 580 164 HOH HOH . O 6 HOH A 81 581 207 HOH HOH . O 6 HOH A 82 582 222 HOH HOH . O 6 HOH A 83 583 65 HOH HOH . O 6 HOH A 84 584 183 HOH HOH . O 6 HOH A 85 585 98 HOH HOH . O 6 HOH A 86 586 77 HOH HOH . O 6 HOH A 87 587 202 HOH HOH . O 6 HOH A 88 588 130 HOH HOH . O 6 HOH A 89 589 25 HOH HOH . O 6 HOH A 90 590 7 HOH HOH . O 6 HOH A 91 591 209 HOH HOH . O 6 HOH A 92 592 159 HOH HOH . O 6 HOH A 93 593 175 HOH HOH . O 6 HOH A 94 594 125 HOH HOH . O 6 HOH A 95 595 194 HOH HOH . O 6 HOH A 96 596 225 HOH HOH . O 6 HOH A 97 597 6 HOH HOH . O 6 HOH A 98 598 227 HOH HOH . O 6 HOH A 99 599 186 HOH HOH . O 6 HOH A 100 600 166 HOH HOH . O 6 HOH A 101 601 122 HOH HOH . O 6 HOH A 102 602 223 HOH HOH . O 6 HOH A 103 603 116 HOH HOH . O 6 HOH A 104 604 180 HOH HOH . O 6 HOH A 105 605 162 HOH HOH . O 6 HOH A 106 606 118 HOH HOH . O 6 HOH A 107 607 235 HOH HOH . O 6 HOH A 108 608 189 HOH HOH . O 6 HOH A 109 609 232 HOH HOH . O 6 HOH A 110 610 188 HOH HOH . O 6 HOH A 111 611 233 HOH HOH . O 6 HOH A 112 612 157 HOH HOH . O 6 HOH A 113 613 206 HOH HOH . O 6 HOH A 114 614 215 HOH HOH . O 6 HOH A 115 615 173 HOH HOH . O 6 HOH A 116 616 145 HOH HOH . O 6 HOH A 117 617 228 HOH HOH . O 6 HOH A 118 618 153 HOH HOH . O 6 HOH A 119 619 185 HOH HOH . O 6 HOH A 120 620 213 HOH HOH . O 6 HOH A 121 621 200 HOH HOH . O 6 HOH A 122 622 17 HOH HOH . O 6 HOH A 123 623 191 HOH HOH . O 6 HOH A 124 624 214 HOH HOH . O 6 HOH A 125 625 182 HOH HOH . O 6 HOH A 126 626 212 HOH HOH . O 6 HOH A 127 627 195 HOH HOH . O 6 HOH A 128 628 236 HOH HOH . O 6 HOH A 129 629 216 HOH HOH . O 6 HOH A 130 630 197 HOH HOH . O 6 HOH A 131 631 205 HOH HOH . O 6 HOH A 132 632 210 HOH HOH . O 6 HOH A 133 633 219 HOH HOH . O 6 HOH A 134 634 156 HOH HOH . O 6 HOH A 135 635 231 HOH HOH . O 6 HOH A 136 636 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 PT PT 1PT . . . M 4 -35.129 -10.676 -22.39 0.4 55.85 ? PT 1PT 412 A 1 HETATM 2 N N1 1PT . . . M 4 -34.942 -12.519 -23.199 0.4 33.12 ? N1 1PT 412 A 1 HETATM 3 N N2 1PT . . . M 4 -36.518 -11.588 -20.986 0.4 34.98 ? N2 1PT 412 A 1 HETATM 4 C C1 1PT . . . M 4 -35.804 -13.448 -22.445 0.4 31.65 ? C1 1PT 412 A 1 HETATM 5 C C2 1PT . . . M 4 -36.974 -12.762 -21.767 0.4 34.2 ? C2 1PT 412 A 1 HETATM 6 C C3 1PT . . . M 4 -37.65 -13.798 -20.861 0.4 34.54 ? C3 1PT 412 A 1 HETATM 7 C C4 1PT . . . M 4 -38.156 -15.006 -21.649 0.4 31.83 ? C4 1PT 412 A 1 HETATM 8 C C5 1PT . . . M 4 -37.07 -15.581 -22.542 0.4 29.01 ? C5 1PT 412 A 1 HETATM 9 C C6 1PT . . . M 4 -36.377 -14.503 -23.366 0.4 29.6 ? C6 1PT 412 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #