data_4ZEK # _model_server_result.job_id cUUk5Gqb0eXIsM6H120i-g _model_server_result.datetime_utc '2024-11-01 22:29:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zek # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4ZEK # _exptl.entry_id 4ZEK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 272.19 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-O-[(R)-hydroxy(propan-2-yloxy)phosphoryl]-alpha-L-arabinopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZEK _cell.length_a 77.17 _cell.length_b 114.06 _cell.length_c 112.53 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZEK _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H17 O8 P' _chem_comp.formula_weight 272.19 _chem_comp.id LAH _chem_comp.mon_nstd_flag n _chem_comp.name 2-O-[(R)-hydroxy(propan-2-yloxy)phosphoryl]-alpha-L-arabinopyranose _chem_comp.type 'l-saccharide, alpha linking' _chem_comp.pdbx_synonyms 2-O-[(R)-hydroxy(propan-2-yloxy)phosphoryl]-alpha-L-arabinose;2-O-[(R)-hydroxy(propan-2-yloxy)phosphoryl]-L-arabinose;2-O-[(R)-hydroxy(propan-2-yloxy)phosphoryl]-arabinose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 O5 LAH sing 182 n n C5 C4 LAH sing 183 n n O5 C1 LAH sing 184 n n C1 O1 LAH sing 185 n n C1 C2 LAH sing 186 n n C4 O4 LAH sing 187 n n C4 C3 LAH sing 188 n n C3 C2 LAH sing 189 n n C3 O3 LAH sing 190 n n C2 O2 LAH sing 191 n n O2 PAQ LAH sing 192 n n PAQ OAG LAH doub 193 n n PAQ OAC LAH sing 194 n n PAQ OAJ LAH sing 195 n n OAJ CAL LAH sing 196 n n CAA CAL LAH sing 197 n n CAL CAB LAH sing 198 n n CAA H1A LAH sing 199 n n CAA H2A LAH sing 200 n n CAA H3A LAH sing 201 n n CAL H4A LAH sing 202 n n CAB H5 LAH sing 203 n n CAB H6 LAH sing 204 n n CAB H7 LAH sing 205 n n OAC H8 LAH sing 206 n n C2 H2 LAH sing 207 n n C3 H3 LAH sing 208 n n O3 HO3 LAH sing 209 n n C4 H4 LAH sing 210 n n O4 HO4 LAH sing 211 n n C5 H51 LAH sing 212 n n C5 H52 LAH sing 213 n n C1 H1 LAH sing 214 n n O1 HO1 LAH sing 215 n n # _atom_sites.entry_id 4ZEK _atom_sites.fract_transf_matrix[1][1] 0.012958 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008767 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LAH A 1 601 601 LAH LAH . C 3 EDO A 1 602 602 EDO EDO . D 3 EDO A 1 603 603 EDO EDO . E 4 TOE A 1 604 604 TOE TOE . F 5 PEG A 1 605 605 PEG PEG . G 3 EDO A 1 606 606 EDO EDO . H 6 HOH A 1 701 796 HOH HOH . H 6 HOH A 2 702 790 HOH HOH . H 6 HOH A 3 703 861 HOH HOH . H 6 HOH A 4 704 848 HOH HOH . H 6 HOH A 5 705 880 HOH HOH . H 6 HOH A 6 706 743 HOH HOH . H 6 HOH A 7 707 733 HOH HOH . H 6 HOH A 8 708 789 HOH HOH . H 6 HOH A 9 709 748 HOH HOH . H 6 HOH A 10 710 798 HOH HOH . H 6 HOH A 11 711 792 HOH HOH . H 6 HOH A 12 712 851 HOH HOH . H 6 HOH A 13 713 879 HOH HOH . H 6 HOH A 14 714 823 HOH HOH . H 6 HOH A 15 715 866 HOH HOH . H 6 HOH A 16 716 872 HOH HOH . H 6 HOH A 17 717 703 HOH HOH . H 6 HOH A 18 718 808 HOH HOH . H 6 HOH A 19 719 770 HOH HOH . H 6 HOH A 20 720 731 HOH HOH . H 6 HOH A 21 721 821 HOH HOH . H 6 HOH A 22 722 810 HOH HOH . H 6 HOH A 23 723 867 HOH HOH . H 6 HOH A 24 724 745 HOH HOH . H 6 HOH A 25 725 813 HOH HOH . H 6 HOH A 26 726 749 HOH HOH . H 6 HOH A 27 727 766 HOH HOH . H 6 HOH A 28 728 716 HOH HOH . H 6 HOH A 29 729 762 HOH HOH . H 6 HOH A 30 730 801 HOH HOH . H 6 HOH A 31 731 820 HOH HOH . H 6 HOH A 32 732 767 HOH HOH . H 6 HOH A 33 733 791 HOH HOH . H 6 HOH A 34 734 800 HOH HOH . H 6 HOH A 35 735 705 HOH HOH . H 6 HOH A 36 736 830 HOH HOH . H 6 HOH A 37 737 841 HOH HOH . H 6 HOH A 38 738 755 HOH HOH . H 6 HOH A 39 739 850 HOH HOH . H 6 HOH A 40 740 822 HOH HOH . H 6 HOH A 41 741 846 HOH HOH . H 6 HOH A 42 742 771 HOH HOH . H 6 HOH A 43 743 811 HOH HOH . H 6 HOH A 44 744 727 HOH HOH . H 6 HOH A 45 745 788 HOH HOH . H 6 HOH A 46 746 756 HOH HOH . H 6 HOH A 47 747 751 HOH HOH . H 6 HOH A 48 748 819 HOH HOH . H 6 HOH A 49 749 844 HOH HOH . H 6 HOH A 50 750 702 HOH HOH . H 6 HOH A 51 751 746 HOH HOH . H 6 HOH A 52 752 882 HOH HOH . H 6 HOH A 53 753 710 HOH HOH . H 6 HOH A 54 754 764 HOH HOH . H 6 HOH A 55 755 803 HOH HOH . H 6 HOH A 56 756 707 HOH HOH . H 6 HOH A 57 757 757 HOH HOH . H 6 HOH A 58 758 853 HOH HOH . H 6 HOH A 59 759 812 HOH HOH . H 6 HOH A 60 760 711 HOH HOH . H 6 HOH A 61 761 849 HOH HOH . H 6 HOH A 62 762 706 HOH HOH . H 6 HOH A 63 763 741 HOH HOH . H 6 HOH A 64 764 859 HOH HOH . H 6 HOH A 65 765 778 HOH HOH . H 6 HOH A 66 766 715 HOH HOH . H 6 HOH A 67 767 868 HOH HOH . H 6 HOH A 68 768 726 HOH HOH . H 6 HOH A 69 769 742 HOH HOH . H 6 HOH A 70 770 781 HOH HOH . H 6 HOH A 71 771 858 HOH HOH . H 6 HOH A 72 772 818 HOH HOH . H 6 HOH A 73 773 817 HOH HOH . H 6 HOH A 74 774 708 HOH HOH . H 6 HOH A 75 775 860 HOH HOH . H 6 HOH A 76 776 780 HOH HOH . H 6 HOH A 77 777 799 HOH HOH . H 6 HOH A 78 778 831 HOH HOH . H 6 HOH A 79 779 857 HOH HOH . H 6 HOH A 80 780 786 HOH HOH . H 6 HOH A 81 781 758 HOH HOH . H 6 HOH A 82 782 832 HOH HOH . H 6 HOH A 83 783 804 HOH HOH . H 6 HOH A 84 784 863 HOH HOH . H 6 HOH A 85 785 809 HOH HOH . H 6 HOH A 86 786 747 HOH HOH . H 6 HOH A 87 787 777 HOH HOH . H 6 HOH A 88 788 752 HOH HOH . H 6 HOH A 89 789 795 HOH HOH . H 6 HOH A 90 790 825 HOH HOH . H 6 HOH A 91 791 896 HOH HOH . H 6 HOH A 92 792 839 HOH HOH . H 6 HOH A 93 793 785 HOH HOH . H 6 HOH A 94 794 761 HOH HOH . H 6 HOH A 95 795 782 HOH HOH . H 6 HOH A 96 796 826 HOH HOH . H 6 HOH A 97 797 834 HOH HOH . H 6 HOH A 98 798 847 HOH HOH . H 6 HOH A 99 799 784 HOH HOH . H 6 HOH A 100 800 805 HOH HOH . H 6 HOH A 101 801 835 HOH HOH . H 6 HOH A 102 802 870 HOH HOH . H 6 HOH A 103 803 833 HOH HOH . H 6 HOH A 104 804 750 HOH HOH . H 6 HOH A 105 805 714 HOH HOH . H 6 HOH A 106 806 769 HOH HOH . H 6 HOH A 107 807 806 HOH HOH . H 6 HOH A 108 808 807 HOH HOH . H 6 HOH A 109 809 814 HOH HOH . H 6 HOH A 110 810 704 HOH HOH . H 6 HOH A 111 811 824 HOH HOH . H 6 HOH A 112 812 709 HOH HOH . H 6 HOH A 113 813 889 HOH HOH . H 6 HOH A 114 814 779 HOH HOH . H 6 HOH A 115 815 773 HOH HOH . H 6 HOH A 116 816 744 HOH HOH . H 6 HOH A 117 817 783 HOH HOH . H 6 HOH A 118 818 775 HOH HOH . H 6 HOH A 119 819 852 HOH HOH . H 6 HOH A 120 820 842 HOH HOH . H 6 HOH A 121 821 873 HOH HOH . H 6 HOH A 122 822 793 HOH HOH . H 6 HOH A 123 823 828 HOH HOH . H 6 HOH A 124 824 772 HOH HOH . H 6 HOH A 125 825 816 HOH HOH . H 6 HOH A 126 826 701 HOH HOH . H 6 HOH A 127 827 871 HOH HOH . H 6 HOH A 128 828 787 HOH HOH . H 6 HOH A 129 829 753 HOH HOH . H 6 HOH A 130 830 836 HOH HOH . H 6 HOH A 131 831 862 HOH HOH . H 6 HOH A 132 832 754 HOH HOH . H 6 HOH A 133 833 890 HOH HOH . H 6 HOH A 134 834 729 HOH HOH . H 6 HOH A 135 835 712 HOH HOH . H 6 HOH A 136 836 837 HOH HOH . H 6 HOH A 137 837 843 HOH HOH . H 6 HOH A 138 838 760 HOH HOH . H 6 HOH A 139 839 864 HOH HOH . H 6 HOH A 140 840 776 HOH HOH . H 6 HOH A 141 841 838 HOH HOH . H 6 HOH A 142 842 763 HOH HOH . H 6 HOH A 143 843 794 HOH HOH . H 6 HOH A 144 844 759 HOH HOH . H 6 HOH A 145 845 829 HOH HOH . H 6 HOH A 146 846 740 HOH HOH . H 6 HOH A 147 847 768 HOH HOH . H 6 HOH A 148 848 827 HOH HOH . H 6 HOH A 149 849 901 HOH HOH . H 6 HOH A 150 850 856 HOH HOH . H 6 HOH A 151 851 894 HOH HOH . H 6 HOH A 152 852 815 HOH HOH . H 6 HOH A 153 853 719 HOH HOH . H 6 HOH A 154 854 865 HOH HOH . H 6 HOH A 155 855 840 HOH HOH . H 6 HOH A 156 856 900 HOH HOH . H 6 HOH A 157 857 899 HOH HOH . H 6 HOH A 158 858 898 HOH HOH . H 6 HOH A 159 859 869 HOH HOH . H 6 HOH A 160 860 765 HOH HOH . H 6 HOH A 161 861 774 HOH HOH . H 6 HOH A 162 862 730 HOH HOH . H 6 HOH A 163 863 732 HOH HOH . H 6 HOH A 164 864 854 HOH HOH . H 6 HOH A 165 865 802 HOH HOH . H 6 HOH A 166 866 721 HOH HOH . H 6 HOH A 167 867 878 HOH HOH . H 6 HOH A 168 868 797 HOH HOH . H 6 HOH A 169 869 875 HOH HOH . H 6 HOH A 170 870 885 HOH HOH . H 6 HOH A 171 871 725 HOH HOH . H 6 HOH A 172 872 713 HOH HOH . H 6 HOH A 173 873 876 HOH HOH . H 6 HOH A 174 874 891 HOH HOH . H 6 HOH A 175 875 728 HOH HOH . H 6 HOH A 176 876 892 HOH HOH . H 6 HOH A 177 877 718 HOH HOH . H 6 HOH A 178 878 736 HOH HOH . H 6 HOH A 179 879 855 HOH HOH . H 6 HOH A 180 880 883 HOH HOH . H 6 HOH A 181 881 720 HOH HOH . H 6 HOH A 182 882 877 HOH HOH . H 6 HOH A 183 883 737 HOH HOH . H 6 HOH A 184 884 723 HOH HOH . H 6 HOH A 185 885 717 HOH HOH . H 6 HOH A 186 886 886 HOH HOH . H 6 HOH A 187 887 845 HOH HOH . H 6 HOH A 188 888 888 HOH HOH . H 6 HOH A 189 889 735 HOH HOH . H 6 HOH A 190 890 734 HOH HOH . H 6 HOH A 191 891 893 HOH HOH . H 6 HOH A 192 892 887 HOH HOH . H 6 HOH A 193 893 874 HOH HOH . H 6 HOH A 194 894 884 HOH HOH . H 6 HOH A 195 895 881 HOH HOH . H 6 HOH A 196 896 739 HOH HOH . H 6 HOH A 197 897 895 HOH HOH . H 6 HOH A 198 898 897 HOH HOH . H 6 HOH A 199 899 902 HOH HOH . H 6 HOH A 200 900 738 HOH HOH . H 6 HOH A 201 901 724 HOH HOH . H 6 HOH A 202 902 722 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA LAH . . . B 2 -13.367 -26.237 21.803 1 41.61 ? CAA LAH 601 A 1 HETATM 2 C CAL LAH . . . B 2 -14.851 -26.002 22.071 1 40.78 ? CAL LAH 601 A 1 HETATM 3 C CAB LAH . . . B 2 -15.214 -25.737 23.499 1 41.11 ? CAB LAH 601 A 1 HETATM 4 O OAJ LAH . . . B 2 -15.686 -26.91 21.432 1 38.65 ? OAJ LAH 601 A 1 HETATM 5 P PAQ LAH . . . B 2 -16.686 -26.464 20.31 1 32.95 ? PAQ LAH 601 A 1 HETATM 6 O OAG LAH . . . B 2 -17.867 -27.402 20.319 1 34.25 ? OAG LAH 601 A 1 HETATM 7 O OAC LAH . . . B 2 -17.149 -25.069 20.576 1 32.52 ? OAC LAH 601 A 1 HETATM 8 O O2 LAH . . . B 2 -15.997 -26.442 18.885 1 33.86 ? O2 LAH 601 A 1 HETATM 9 C C2 LAH . . . B 2 -15.842 -27.588 18.016 1 35.25 ? C2 LAH 601 A 1 HETATM 10 C C3 LAH . . . B 2 -14.451 -27.927 17.861 1 33.86 ? C3 LAH 601 A 1 HETATM 11 O O3 LAH . . . B 2 -13.87 -28.396 19.145 1 33.03 ? O3 LAH 601 A 1 HETATM 12 C C4 LAH . . . B 2 -14.144 -28.861 16.842 1 34.19 ? C4 LAH 601 A 1 HETATM 13 O O4 LAH . . . B 2 -14.53 -30.194 17.221 1 35.29 ? O4 LAH 601 A 1 HETATM 14 C C5 LAH . . . B 2 -14.834 -28.557 15.528 1 35.02 ? C5 LAH 601 A 1 HETATM 15 O O5 LAH . . . B 2 -16.202 -28.233 15.71 1 34.98 ? O5 LAH 601 A 1 HETATM 16 C C1 LAH . . . B 2 -16.439 -27.234 16.673 1 35.28 ? C1 LAH 601 A 1 HETATM 17 O O1 LAH . . . B 2 -17.792 -27.033 16.771 1 36.58 ? O1 LAH 601 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 40 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #