data_4ZF6 # _model_server_result.job_id 9VOtfnBE-m3xp3cCcROipQ _model_server_result.datetime_utc '2024-11-12 21:08:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zf6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 4ZF6 # _exptl.entry_id 4ZF6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZF6 _cell.length_a 56.047 _cell.length_b 56.047 _cell.length_c 711.229 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZF6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N THR 2 A THR 1 1_555 G NI NI . A NI 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc2 A OG1 THR 2 A THR 1 1_555 G NI NI . A NI 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc3 A NE2 HIS 139 A HIS 138 1_555 E NI NI . A NI 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc4 A OD1 ASP 215 A ASP 214 1_555 F NI NI . A NI 505 1_445 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc5 A OD2 ASP 215 A ASP 214 1_555 F NI NI . A NI 505 1_445 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc6 A OD1 ASP 232 A ASP 231 1_555 H NI NI . A NI 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc7 A OD2 ASP 232 A ASP 231 1_555 H NI NI . A NI 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc8 A ND1 HIS 237 A HIS 236 1_555 H NI NI . A NI 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc9 A NE2 HIS 237 A HIS 236 1_555 H NI NI . A NI 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc10 A NE2 HIS 286 A HIS 285 1_555 F NI NI . A NI 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc11 A OD2 ASP 339 A ASP 338 1_555 G NI NI . A NI 506 10_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc12 A OE1 GLU 349 A GLU 348 1_555 G NI NI . A NI 506 10_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc13 A SG CYS 401 A CYS 400 1_555 B FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc14 A NE2 HIS 427 A HIS 426 1_555 E NI NI . A NI 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 4ZF6 _atom_sites.fract_transf_matrix[1][1] 0.017842 _atom_sites.fract_transf_matrix[1][2] 0.010301 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001406 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 500 HEM HEM . C 3 1PE A 1 502 501 1PE 1PE . D 4 EDO A 1 503 502 EDO EDO . E 5 NI A 1 504 601 NI NI . F 5 NI A 1 505 602 NI NI . G 5 NI A 1 506 603 NI NI . H 5 NI A 1 507 604 NI NI . I 6 HOH A 1 601 717 HOH HOH . I 6 HOH A 2 602 705 HOH HOH . I 6 HOH A 3 603 738 HOH HOH . I 6 HOH A 4 604 759 HOH HOH . I 6 HOH A 5 605 732 HOH HOH . I 6 HOH A 6 606 703 HOH HOH . I 6 HOH A 7 607 723 HOH HOH . I 6 HOH A 8 608 743 HOH HOH . I 6 HOH A 9 609 757 HOH HOH . I 6 HOH A 10 610 701 HOH HOH . I 6 HOH A 11 611 719 HOH HOH . I 6 HOH A 12 612 733 HOH HOH . I 6 HOH A 13 613 758 HOH HOH . I 6 HOH A 14 614 748 HOH HOH . I 6 HOH A 15 615 712 HOH HOH . I 6 HOH A 16 616 736 HOH HOH . I 6 HOH A 17 617 709 HOH HOH . I 6 HOH A 18 618 720 HOH HOH . I 6 HOH A 19 619 760 HOH HOH . I 6 HOH A 20 620 746 HOH HOH . I 6 HOH A 21 621 706 HOH HOH . I 6 HOH A 22 622 702 HOH HOH . I 6 HOH A 23 623 718 HOH HOH . I 6 HOH A 24 624 715 HOH HOH . I 6 HOH A 25 625 740 HOH HOH . I 6 HOH A 26 626 751 HOH HOH . I 6 HOH A 27 627 711 HOH HOH . I 6 HOH A 28 628 721 HOH HOH . I 6 HOH A 29 629 756 HOH HOH . I 6 HOH A 30 630 710 HOH HOH . I 6 HOH A 31 631 728 HOH HOH . I 6 HOH A 32 632 708 HOH HOH . I 6 HOH A 33 633 726 HOH HOH . I 6 HOH A 34 634 707 HOH HOH . I 6 HOH A 35 635 714 HOH HOH . I 6 HOH A 36 636 725 HOH HOH . I 6 HOH A 37 637 727 HOH HOH . I 6 HOH A 38 638 713 HOH HOH . I 6 HOH A 39 639 734 HOH HOH . I 6 HOH A 40 640 722 HOH HOH . I 6 HOH A 41 641 742 HOH HOH . I 6 HOH A 42 642 737 HOH HOH . I 6 HOH A 43 643 704 HOH HOH . I 6 HOH A 44 644 731 HOH HOH . I 6 HOH A 45 645 761 HOH HOH . I 6 HOH A 46 646 747 HOH HOH . I 6 HOH A 47 647 741 HOH HOH . I 6 HOH A 48 648 735 HOH HOH . I 6 HOH A 49 649 724 HOH HOH . I 6 HOH A 50 650 749 HOH HOH . I 6 HOH A 51 651 752 HOH HOH . I 6 HOH A 52 652 729 HOH HOH . I 6 HOH A 53 653 745 HOH HOH . I 6 HOH A 54 654 716 HOH HOH . I 6 HOH A 55 655 750 HOH HOH . I 6 HOH A 56 656 730 HOH HOH . I 6 HOH A 57 657 739 HOH HOH . I 6 HOH A 58 658 753 HOH HOH . I 6 HOH A 59 659 744 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . C 3 -24.073 8.759 31.924 1 66.5 ? OH2 1PE 502 A 1 HETATM 2 C C12 1PE . . . C 3 -22.718 8.486 32.114 1 69.14 ? C12 1PE 502 A 1 HETATM 3 C C22 1PE . . . C 3 -22.089 8.028 30.76 1 81.72 ? C22 1PE 502 A 1 HETATM 4 O OH3 1PE . . . C 3 -20.691 8.014 30.866 1 91.63 ? OH3 1PE 502 A 1 HETATM 5 C C13 1PE . . . C 3 -18.66 6.926 30.126 1 69.89 ? C13 1PE 502 A 1 HETATM 6 C C23 1PE . . . C 3 -20.087 6.741 30.614 1 77.72 ? C23 1PE 502 A 1 HETATM 7 O OH4 1PE . . . C 3 -17.88 5.768 30.431 1 83.86 ? OH4 1PE 502 A 1 HETATM 8 C C14 1PE . . . C 3 -16.15 4.122 29.828 1 70.3 ? C14 1PE 502 A 1 HETATM 9 C C24 1PE . . . C 3 -16.78 5.516 29.523 1 64.27 ? C24 1PE 502 A 1 HETATM 10 O OH5 1PE . . . C 3 -15.754 3.48 28.599 1 71.92 ? OH5 1PE 502 A 1 HETATM 11 C C15 1PE . . . C 3 -16.01 1.737 26.949 1 75.57 ? C15 1PE 502 A 1 HETATM 12 C C25 1PE . . . C 3 -16.536 2.352 28.258 1 55.88 ? C25 1PE 502 A 1 HETATM 13 O OH6 1PE . . . C 3 -16.536 0.418 26.795 1 63.86 ? OH6 1PE 502 A 1 HETATM 14 C C16 1PE . . . C 3 -16.215 -1.916 26.381 1 44.27 ? C16 1PE 502 A 1 HETATM 15 C C26 1PE . . . C 3 -15.541 -0.581 26.494 1 52.83 ? C26 1PE 502 A 1 HETATM 16 O OH7 1PE . . . C 3 -15.312 -2.86 25.853 1 51.15 ? OH7 1PE 502 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 16 #