data_4ZF8 # _model_server_result.job_id 8aFvD0xj6ZMOc1IIDYluDw _model_server_result.datetime_utc '2024-11-12 21:04:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zf8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 4ZF8 # _exptl.entry_id 4ZF8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 226.274 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METYRAPONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZF8 _cell.length_a 55.899 _cell.length_b 55.899 _cell.length_c 711.033 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZF8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N THR 2 A THR 1 1_555 D NI NI . A NI 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc2 A OG1 THR 2 A THR 1 1_555 D NI NI . A NI 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc3 A NE2 HIS 139 A HIS 138 1_555 E NI NI . A NI 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc4 A OD1 ASP 215 A ASP 214 1_555 G NI NI . A NI 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc5 A NE2 HIS 237 A HIS 236 1_555 F NI NI . A NI 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc6 A NE2 HIS 286 A HIS 285 1_555 G NI NI . A NI 506 1_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc7 A OD2 ASP 339 A ASP 338 1_555 D NI NI . A NI 503 10_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc8 A OE1 GLU 349 A GLU 348 1_555 D NI NI . A NI 503 10_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc9 A SG CYS 401 A CYS 400 1_555 B FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc10 A NE2 HIS 427 A HIS 426 1_555 E NI NI . A NI 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc11 B FE HEM . A HEM 501 1_555 C N14 MYT . A MYT 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? # _chem_comp.formula 'C14 H14 N2 O' _chem_comp.formula_weight 226.274 _chem_comp.id MYT _chem_comp.mon_nstd_flag . _chem_comp.name METYRAPONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 MYT doub 319 n y N1 C6 MYT sing 320 n y C2 C3 MYT sing 321 n y C2 H2 MYT sing 322 n n C3 C4 MYT doub 323 n y C3 C7 MYT sing 324 n n C4 C5 MYT sing 325 n y C4 H4 MYT sing 326 n n C5 C6 MYT doub 327 n y C5 H5 MYT sing 328 n n C6 H6 MYT sing 329 n n C7 O8 MYT doub 330 n n C7 C10 MYT sing 331 n n C9 C10 MYT sing 332 n n C9 H91 MYT sing 333 n n C9 H92 MYT sing 334 n n C9 H93 MYT sing 335 n n C10 C11 MYT sing 336 n n C10 C12 MYT sing 337 n n C11 H111 MYT sing 338 n n C11 H112 MYT sing 339 n n C11 H113 MYT sing 340 n n C12 C13 MYT sing 341 n y C12 C17 MYT doub 342 n y C13 N14 MYT doub 343 n y C13 H13 MYT sing 344 n n N14 C15 MYT sing 345 n y C15 C16 MYT doub 346 n y C15 H15 MYT sing 347 n n C16 C17 MYT sing 348 n y C16 H16 MYT sing 349 n n C17 H17 MYT sing 350 n n # _atom_sites.entry_id 4ZF8 _atom_sites.fract_transf_matrix[1][1] 0.017889 _atom_sites.fract_transf_matrix[1][2] 0.010328 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020657 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001406 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 500 HEM HEM . C 3 MYT A 1 502 501 MYT MYT . D 4 NI A 1 503 601 NI NI . E 4 NI A 1 504 602 NI NI . F 4 NI A 1 505 603 NI NI . G 4 NI A 1 506 604 NI NI . H 5 HOH A 1 601 752 HOH HOH . H 5 HOH A 2 602 720 HOH HOH . H 5 HOH A 3 603 751 HOH HOH . H 5 HOH A 4 604 703 HOH HOH . H 5 HOH A 5 605 704 HOH HOH . H 5 HOH A 6 606 754 HOH HOH . H 5 HOH A 7 607 713 HOH HOH . H 5 HOH A 8 608 719 HOH HOH . H 5 HOH A 9 609 717 HOH HOH . H 5 HOH A 10 610 749 HOH HOH . H 5 HOH A 11 611 743 HOH HOH . H 5 HOH A 12 612 782 HOH HOH . H 5 HOH A 13 613 733 HOH HOH . H 5 HOH A 14 614 768 HOH HOH . H 5 HOH A 15 615 783 HOH HOH . H 5 HOH A 16 616 770 HOH HOH . H 5 HOH A 17 617 739 HOH HOH . H 5 HOH A 18 618 737 HOH HOH . H 5 HOH A 19 619 707 HOH HOH . H 5 HOH A 20 620 750 HOH HOH . H 5 HOH A 21 621 718 HOH HOH . H 5 HOH A 22 622 774 HOH HOH . H 5 HOH A 23 623 773 HOH HOH . H 5 HOH A 24 624 729 HOH HOH . H 5 HOH A 25 625 744 HOH HOH . H 5 HOH A 26 626 725 HOH HOH . H 5 HOH A 27 627 710 HOH HOH . H 5 HOH A 28 628 766 HOH HOH . H 5 HOH A 29 629 723 HOH HOH . H 5 HOH A 30 630 721 HOH HOH . H 5 HOH A 31 631 727 HOH HOH . H 5 HOH A 32 632 702 HOH HOH . H 5 HOH A 33 633 759 HOH HOH . H 5 HOH A 34 634 778 HOH HOH . H 5 HOH A 35 635 715 HOH HOH . H 5 HOH A 36 636 716 HOH HOH . H 5 HOH A 37 637 709 HOH HOH . H 5 HOH A 38 638 732 HOH HOH . H 5 HOH A 39 639 711 HOH HOH . H 5 HOH A 40 640 706 HOH HOH . H 5 HOH A 41 641 728 HOH HOH . H 5 HOH A 42 642 734 HOH HOH . H 5 HOH A 43 643 701 HOH HOH . H 5 HOH A 44 644 731 HOH HOH . H 5 HOH A 45 645 775 HOH HOH . H 5 HOH A 46 646 730 HOH HOH . H 5 HOH A 47 647 714 HOH HOH . H 5 HOH A 48 648 740 HOH HOH . H 5 HOH A 49 649 726 HOH HOH . H 5 HOH A 50 650 772 HOH HOH . H 5 HOH A 51 651 756 HOH HOH . H 5 HOH A 52 652 735 HOH HOH . H 5 HOH A 53 653 742 HOH HOH . H 5 HOH A 54 654 771 HOH HOH . H 5 HOH A 55 655 757 HOH HOH . H 5 HOH A 56 656 765 HOH HOH . H 5 HOH A 57 657 722 HOH HOH . H 5 HOH A 58 658 712 HOH HOH . H 5 HOH A 59 659 762 HOH HOH . H 5 HOH A 60 660 760 HOH HOH . H 5 HOH A 61 661 745 HOH HOH . H 5 HOH A 62 662 755 HOH HOH . H 5 HOH A 63 663 748 HOH HOH . H 5 HOH A 64 664 779 HOH HOH . H 5 HOH A 65 665 705 HOH HOH . H 5 HOH A 66 666 741 HOH HOH . H 5 HOH A 67 667 708 HOH HOH . H 5 HOH A 68 668 746 HOH HOH . H 5 HOH A 69 669 780 HOH HOH . H 5 HOH A 70 670 724 HOH HOH . H 5 HOH A 71 671 758 HOH HOH . H 5 HOH A 72 672 747 HOH HOH . H 5 HOH A 73 673 763 HOH HOH . H 5 HOH A 74 674 776 HOH HOH . H 5 HOH A 75 675 738 HOH HOH . H 5 HOH A 76 676 777 HOH HOH . H 5 HOH A 77 677 764 HOH HOH . H 5 HOH A 78 678 769 HOH HOH . H 5 HOH A 79 679 761 HOH HOH . H 5 HOH A 80 680 753 HOH HOH . H 5 HOH A 81 681 736 HOH HOH . H 5 HOH A 82 682 767 HOH HOH . H 5 HOH A 83 683 781 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MYT . . . C 3 16.601 -0.655 24.979 1 57.82 ? N1 MYT 502 A 1 HETATM 2 C C2 MYT . . . C 3 16.073 -1.429 25.98 1 55.56 ? C2 MYT 502 A 1 HETATM 3 C C3 MYT . . . C 3 15.342 -0.844 27.008 1 56.36 ? C3 MYT 502 A 1 HETATM 4 C C4 MYT . . . C 3 15.149 0.506 27.016 1 55.71 ? C4 MYT 502 A 1 HETATM 5 C C5 MYT . . . C 3 15.679 1.284 26.017 1 57.19 ? C5 MYT 502 A 1 HETATM 6 C C6 MYT . . . C 3 16.411 0.693 24.993 1 63.22 ? C6 MYT 502 A 1 HETATM 7 C C7 MYT . . . C 3 14.748 -1.763 28.134 1 56.44 ? C7 MYT 502 A 1 HETATM 8 O O8 MYT . . . C 3 15.45 -2.687 28.564 1 58.42 ? O8 MYT 502 A 1 HETATM 9 C C9 MYT . . . C 3 13.011 -2.846 29.526 1 60.16 ? C9 MYT 502 A 1 HETATM 10 C C10 MYT . . . C 3 13.32 -1.589 28.731 1 53.89 ? C10 MYT 502 A 1 HETATM 11 C C11 MYT . . . C 3 13.259 -0.429 29.666 1 55.66 ? C11 MYT 502 A 1 HETATM 12 C C12 MYT . . . C 3 12.219 -1.428 27.628 1 55.83 ? C12 MYT 502 A 1 HETATM 13 C C13 MYT . . . C 3 10.975 -0.917 27.988 1 49.3 ? C13 MYT 502 A 1 HETATM 14 N N14 MYT . . . C 3 10 -0.773 27.048 1 46.65 ? N14 MYT 502 A 1 HETATM 15 C C15 MYT . . . C 3 10.238 -1.139 25.737 1 42.56 ? C15 MYT 502 A 1 HETATM 16 C C16 MYT . . . C 3 11.472 -1.643 25.373 1 46.49 ? C16 MYT 502 A 1 HETATM 17 C C17 MYT . . . C 3 12.452 -1.794 26.322 1 52.54 ? C17 MYT 502 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #