data_4ZFB # _model_server_result.job_id '_eJ_nl75do9srGO3C2mFtQ' _model_server_result.datetime_utc '2024-11-30 03:48:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zfb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 4ZFB # _exptl.entry_id 4ZFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZFB _cell.length_a 55.679 _cell.length_b 55.679 _cell.length_c 707.577 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N THR 2 A THR 1 1_555 E NI NI . A NI 504 10_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc2 A OG1 THR 2 A THR 1 1_555 E NI NI . A NI 504 10_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc3 A NE2 HIS 139 A HIS 138 1_555 F NI NI . A NI 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc4 A OD1 ASP 215 A ASP 214 1_555 G NI NI . A NI 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc5 A OD1 ASP 232 A ASP 231 1_555 H NI NI . A NI 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? metalc ? metalc6 A NE2 HIS 237 A HIS 236 1_555 H NI NI . A NI 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc7 A NE2 HIS 286 A HIS 285 1_555 G NI NI . A NI 506 1_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc8 A OD2 ASP 339 A ASP 338 1_555 E NI NI . A NI 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc9 A OE2 GLU 349 A GLU 348 1_555 E NI NI . A NI 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc10 A SG CYS 401 A CYS 400 1_555 B FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc11 A NE2 HIS 427 A HIS 426 1_555 F NI NI . A NI 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4ZFB _atom_sites.fract_transf_matrix[1][1] 0.01796 _atom_sites.fract_transf_matrix[1][2] 0.010369 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020738 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001413 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 500 HEM HEM . C 3 PLM A 1 502 501 PLM PLM . D 4 EDO A 1 503 502 EDO EDO . E 5 NI A 1 504 601 NI NI . F 5 NI A 1 505 602 NI NI . G 5 NI A 1 506 603 NI NI . H 5 NI A 1 507 604 NI NI . I 6 HOH A 1 601 732 HOH HOH . I 6 HOH A 2 602 704 HOH HOH . I 6 HOH A 3 603 721 HOH HOH . I 6 HOH A 4 604 702 HOH HOH . I 6 HOH A 5 605 736 HOH HOH . I 6 HOH A 6 606 714 HOH HOH . I 6 HOH A 7 607 716 HOH HOH . I 6 HOH A 8 608 745 HOH HOH . I 6 HOH A 9 609 701 HOH HOH . I 6 HOH A 10 610 737 HOH HOH . I 6 HOH A 11 611 750 HOH HOH . I 6 HOH A 12 612 746 HOH HOH . I 6 HOH A 13 613 734 HOH HOH . I 6 HOH A 14 614 727 HOH HOH . I 6 HOH A 15 615 707 HOH HOH . I 6 HOH A 16 616 744 HOH HOH . I 6 HOH A 17 617 725 HOH HOH . I 6 HOH A 18 618 724 HOH HOH . I 6 HOH A 19 619 742 HOH HOH . I 6 HOH A 20 620 715 HOH HOH . I 6 HOH A 21 621 713 HOH HOH . I 6 HOH A 22 622 731 HOH HOH . I 6 HOH A 23 623 747 HOH HOH . I 6 HOH A 24 624 717 HOH HOH . I 6 HOH A 25 625 728 HOH HOH . I 6 HOH A 26 626 719 HOH HOH . I 6 HOH A 27 627 733 HOH HOH . I 6 HOH A 28 628 749 HOH HOH . I 6 HOH A 29 629 740 HOH HOH . I 6 HOH A 30 630 703 HOH HOH . I 6 HOH A 31 631 723 HOH HOH . I 6 HOH A 32 632 739 HOH HOH . I 6 HOH A 33 633 711 HOH HOH . I 6 HOH A 34 634 708 HOH HOH . I 6 HOH A 35 635 709 HOH HOH . I 6 HOH A 36 636 726 HOH HOH . I 6 HOH A 37 637 712 HOH HOH . I 6 HOH A 38 638 751 HOH HOH . I 6 HOH A 39 639 706 HOH HOH . I 6 HOH A 40 640 741 HOH HOH . I 6 HOH A 41 641 718 HOH HOH . I 6 HOH A 42 642 753 HOH HOH . I 6 HOH A 43 643 722 HOH HOH . I 6 HOH A 44 644 752 HOH HOH . I 6 HOH A 45 645 720 HOH HOH . I 6 HOH A 46 646 730 HOH HOH . I 6 HOH A 47 647 705 HOH HOH . I 6 HOH A 48 648 710 HOH HOH . I 6 HOH A 49 649 756 HOH HOH . I 6 HOH A 50 650 743 HOH HOH . I 6 HOH A 51 651 729 HOH HOH . I 6 HOH A 52 652 748 HOH HOH . I 6 HOH A 53 653 735 HOH HOH . I 6 HOH A 54 654 754 HOH HOH . I 6 HOH A 55 655 738 HOH HOH . I 6 HOH A 56 656 755 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 12.038 -1.265 26.267 1 49.18 ? C1 EDO 503 A 1 HETATM 2 O O1 EDO . . . D 4 10.666 -1.242 25.857 1 43.53 ? O1 EDO 503 A 1 HETATM 3 C C2 EDO . . . D 4 12.144 -0.757 27.698 1 43.03 ? C2 EDO 503 A 1 HETATM 4 O O2 EDO . . . D 4 11.43 -1.641 28.565 1 40.03 ? O2 EDO 503 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 4 #