data_4ZFP # _model_server_result.job_id DCBV4ccC2TwJ0dkrqGkNNA _model_server_result.datetime_utc '2024-10-20 19:04:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zfp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4ZFP # _exptl.entry_id 4ZFP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZFP _cell.length_a 77.584 _cell.length_b 77.584 _cell.length_c 37.111 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZFP _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc1 A NE2 HIS 15 A HIS 15 1_555 J AU AU . A AU 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc2 A ND1 HIS 15 A HIS 15 1_555 K AU AU . A AU 210 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.924 ? metalc ? metalc3 A SD MET 105 A MET 105 1_555 I AU AU . A AU 208 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc4 H O3 NO3 . A NO3 207 1_555 J AU AU . A AU 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc5 I AU AU . A AU 208 1_555 L O HOH . A HOH 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc6 K AU AU . A AU 210 1_555 L O HOH . A HOH 403 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.329 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4ZFP _atom_sites.fract_transf_matrix[1][1] 0.012889 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012889 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026946 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 302 EDO EDO . C 3 NO3 A 1 202 401 NO3 NO3 . D 3 NO3 A 1 203 408 NO3 NO3 . E 3 NO3 A 1 204 405 NO3 NO3 . F 3 NO3 A 1 205 406 NO3 NO3 . G 3 NO3 A 1 206 407 NO3 NO3 . H 3 NO3 A 1 207 403 NO3 NO3 . I 4 AU A 1 208 1 AU AU . J 4 AU A 1 209 2 AU AU . K 4 AU A 1 210 3 AU AU . L 5 HOH A 1 301 113 HOH HOH . L 5 HOH A 2 302 224 HOH HOH . L 5 HOH A 3 303 209 HOH HOH . L 5 HOH A 4 304 15 HOH HOH . L 5 HOH A 5 305 193 HOH HOH . L 5 HOH A 6 306 115 HOH HOH . L 5 HOH A 7 307 72 HOH HOH . L 5 HOH A 8 308 5 HOH HOH . L 5 HOH A 9 309 186 HOH HOH . L 5 HOH A 10 310 23 HOH HOH . L 5 HOH A 11 311 98 HOH HOH . L 5 HOH A 12 312 13 HOH HOH . L 5 HOH A 13 313 129 HOH HOH . L 5 HOH A 14 314 21 HOH HOH . L 5 HOH A 15 315 114 HOH HOH . L 5 HOH A 16 316 75 HOH HOH . L 5 HOH A 17 317 49 HOH HOH . L 5 HOH A 18 318 51 HOH HOH . L 5 HOH A 19 319 16 HOH HOH . L 5 HOH A 20 320 4 HOH HOH . L 5 HOH A 21 321 33 HOH HOH . L 5 HOH A 22 322 55 HOH HOH . L 5 HOH A 23 323 168 HOH HOH . L 5 HOH A 24 324 10 HOH HOH . L 5 HOH A 25 325 22 HOH HOH . L 5 HOH A 26 326 60 HOH HOH . L 5 HOH A 27 327 195 HOH HOH . L 5 HOH A 28 328 27 HOH HOH . L 5 HOH A 29 329 59 HOH HOH . L 5 HOH A 30 330 14 HOH HOH . L 5 HOH A 31 331 64 HOH HOH . L 5 HOH A 32 332 43 HOH HOH . L 5 HOH A 33 333 159 HOH HOH . L 5 HOH A 34 334 32 HOH HOH . L 5 HOH A 35 335 19 HOH HOH . L 5 HOH A 36 336 76 HOH HOH . L 5 HOH A 37 337 181 HOH HOH . L 5 HOH A 38 338 3 HOH HOH . L 5 HOH A 39 339 18 HOH HOH . L 5 HOH A 40 340 11 HOH HOH . L 5 HOH A 41 341 221 HOH HOH . L 5 HOH A 42 342 182 HOH HOH . L 5 HOH A 43 343 73 HOH HOH . L 5 HOH A 44 344 9 HOH HOH . L 5 HOH A 45 345 25 HOH HOH . L 5 HOH A 46 346 42 HOH HOH . L 5 HOH A 47 347 48 HOH HOH . L 5 HOH A 48 348 37 HOH HOH . L 5 HOH A 49 349 10 HOH HOH . L 5 HOH A 50 350 7 HOH HOH . L 5 HOH A 51 351 5 HOH HOH . L 5 HOH A 52 352 203 HOH HOH . L 5 HOH A 53 353 65 HOH HOH . L 5 HOH A 54 354 38 HOH HOH . L 5 HOH A 55 355 173 HOH HOH . L 5 HOH A 56 356 119 HOH HOH . L 5 HOH A 57 357 162 HOH HOH . L 5 HOH A 58 358 6 HOH HOH . L 5 HOH A 59 359 158 HOH HOH . L 5 HOH A 60 360 198 HOH HOH . L 5 HOH A 61 361 176 HOH HOH . L 5 HOH A 62 362 89 HOH HOH . L 5 HOH A 63 363 24 HOH HOH . L 5 HOH A 64 364 4 HOH HOH . L 5 HOH A 65 365 167 HOH HOH . L 5 HOH A 66 366 26 HOH HOH . L 5 HOH A 67 367 164 HOH HOH . L 5 HOH A 68 368 155 HOH HOH . L 5 HOH A 69 369 170 HOH HOH . L 5 HOH A 70 370 47 HOH HOH . L 5 HOH A 71 371 7 HOH HOH . L 5 HOH A 72 372 163 HOH HOH . L 5 HOH A 73 373 1 HOH HOH . L 5 HOH A 74 374 213 HOH HOH . L 5 HOH A 75 375 200 HOH HOH . L 5 HOH A 76 376 192 HOH HOH . L 5 HOH A 77 377 19 HOH HOH . L 5 HOH A 78 378 118 HOH HOH . L 5 HOH A 79 379 2 HOH HOH . L 5 HOH A 80 380 130 HOH HOH . L 5 HOH A 81 381 216 HOH HOH . L 5 HOH A 82 382 157 HOH HOH . L 5 HOH A 83 383 75 HOH HOH . L 5 HOH A 84 384 77 HOH HOH . L 5 HOH A 85 385 121 HOH HOH . L 5 HOH A 86 386 217 HOH HOH . L 5 HOH A 87 387 219 HOH HOH . L 5 HOH A 88 388 211 HOH HOH . L 5 HOH A 89 389 125 HOH HOH . L 5 HOH A 90 390 199 HOH HOH . L 5 HOH A 91 391 183 HOH HOH . L 5 HOH A 92 392 189 HOH HOH . L 5 HOH A 93 393 194 HOH HOH . L 5 HOH A 94 394 196 HOH HOH . L 5 HOH A 95 395 208 HOH HOH . L 5 HOH A 96 396 206 HOH HOH . L 5 HOH A 97 397 184 HOH HOH . L 5 HOH A 98 398 218 HOH HOH . L 5 HOH A 99 399 204 HOH HOH . L 5 HOH A 100 400 191 HOH HOH . L 5 HOH A 101 401 177 HOH HOH . L 5 HOH A 102 402 17 HOH HOH . L 5 HOH A 103 403 188 HOH HOH . L 5 HOH A 104 404 197 HOH HOH . L 5 HOH A 105 405 222 HOH HOH . L 5 HOH A 106 406 175 HOH HOH . L 5 HOH A 107 407 153 HOH HOH . L 5 HOH A 108 408 225 HOH HOH . L 5 HOH A 109 409 214 HOH HOH . L 5 HOH A 110 410 174 HOH HOH . L 5 HOH A 111 411 185 HOH HOH . L 5 HOH A 112 412 212 HOH HOH . L 5 HOH A 113 413 210 HOH HOH . L 5 HOH A 114 414 202 HOH HOH . L 5 HOH A 115 415 205 HOH HOH . L 5 HOH A 116 416 179 HOH HOH . L 5 HOH A 117 417 207 HOH HOH . L 5 HOH A 118 418 228 HOH HOH . L 5 HOH A 119 419 72 HOH HOH . L 5 HOH A 120 420 190 HOH HOH . L 5 HOH A 121 421 187 HOH HOH . L 5 HOH A 122 422 220 HOH HOH . L 5 HOH A 123 423 215 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 -21.958 2.21 -3.255 1 35.55 ? C1 EDO 201 A 1 HETATM 2 O O1 EDO . . . B 2 -20.948 3.168 -3.007 1 35.44 ? O1 EDO 201 A 1 HETATM 3 C C2 EDO . . . B 2 -23.074 3.041 -3.788 1 37.53 ? C2 EDO 201 A 1 HETATM 4 O O2 EDO . . . B 2 -22.441 4.137 -4.443 1 42.3 ? O2 EDO 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #