data_4ZFQ # _model_server_result.job_id MH3N0hY2EfcTt79cU6wp9Q _model_server_result.datetime_utc '2025-09-20 05:05:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zfq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 4ZFQ # _exptl.entry_id 4ZFQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 385.478 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S,3R,4S)-4-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZFQ _cell.length_a 99.393 _cell.length_b 99.393 _cell.length_c 193.384 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZFQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 360 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 360 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id CAA _struct_conn.ptnr2_label_comp_id DWZ _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id DWZ _struct_conn.ptnr2_auth_seq_id 503 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.748 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H27 N3 O5 S' _chem_comp.formula_weight 385.478 _chem_comp.id DWZ _chem_comp.mon_nstd_flag . _chem_comp.name '(2S,3R,4S)-4-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Meropenem, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBE HBE DWZ sing 83 n n CBE HBEA DWZ sing 84 n n CBE HBEB DWZ sing 85 n n NBC CBE DWZ sing 86 n n CBD NBC DWZ sing 87 n n CBD HBD DWZ sing 88 n n CBD HBDA DWZ sing 89 n n CBD HBDB DWZ sing 90 n n C NBC DWZ sing 91 n n C CA DWZ sing 92 n n O C DWZ doub 93 n n CA N DWZ sing 94 n n CA HA DWZ sing 95 n n CB CA DWZ sing 96 n n CB CG DWZ sing 97 n n CB HB DWZ sing 98 n n CB HBA DWZ sing 99 n n N HN DWZ sing 100 n n CD N DWZ sing 101 n n CD HD DWZ sing 102 n n CD HDA DWZ sing 103 n n CG CD DWZ sing 104 n n CG HG DWZ sing 105 n n SAK CG DWZ sing 106 n n SAK CAI DWZ sing 107 n n CAI HAI DWZ sing 108 n n CAH CAI DWZ sing 109 n n CAH CAS DWZ sing 110 n n CAH HAH DWZ sing 111 n n CAS HAS DWZ sing 112 n n CAS HASA DWZ sing 113 n n CAS HASB DWZ sing 114 n n CAL CAI DWZ sing 115 n n CAL CAM DWZ sing 116 n n CAM OAU DWZ sing 117 n n OAT CAM DWZ doub 118 n n OAU HOAU DWZ sing 119 n n NAJ CAL DWZ doub 120 n n NAJ CAD DWZ sing 121 n n CAD CAH DWZ sing 122 n n CAD CAB DWZ sing 123 n n CAD HAD DWZ sing 124 n n CAB HAB DWZ sing 125 n n CAE CAB DWZ sing 126 n n CAE CAF DWZ sing 127 n n CAE HAE DWZ sing 128 n n CAF HAF DWZ sing 129 n n CAF HAFA DWZ sing 130 n n CAF HAFB DWZ sing 131 n n OAG CAE DWZ sing 132 n n OAG HOAG DWZ sing 133 n n CAA CAB DWZ sing 134 n n CAA OAC DWZ doub 135 n n CAA HAA DWZ sing 136 n n # _atom_sites.entry_id 4ZFQ _atom_sites.fract_transf_matrix[1][1] 0.010061 _atom_sites.fract_transf_matrix[1][2] 0.005809 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011618 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005171 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEG A 1 501 501 PEG PEG . C 2 PEG A 1 502 502 PEG PEG . D 3 DWZ A 1 503 503 DWZ DWZ . E 4 HOH A 1 601 602 HOH HOH . E 4 HOH A 2 602 601 HOH HOH . E 4 HOH A 3 603 603 HOH HOH . E 4 HOH A 4 604 643 HOH HOH . E 4 HOH A 5 605 604 HOH HOH . E 4 HOH A 6 606 607 HOH HOH . E 4 HOH A 7 607 605 HOH HOH . E 4 HOH A 8 608 606 HOH HOH . E 4 HOH A 9 609 610 HOH HOH . E 4 HOH A 10 610 609 HOH HOH . E 4 HOH A 11 611 611 HOH HOH . E 4 HOH A 12 612 612 HOH HOH . E 4 HOH A 13 613 618 HOH HOH . E 4 HOH A 14 614 619 HOH HOH . E 4 HOH A 15 615 622 HOH HOH . E 4 HOH A 16 616 620 HOH HOH . E 4 HOH A 17 617 615 HOH HOH . E 4 HOH A 18 618 616 HOH HOH . E 4 HOH A 19 619 617 HOH HOH . E 4 HOH A 20 620 614 HOH HOH . E 4 HOH A 21 621 627 HOH HOH . E 4 HOH A 22 622 625 HOH HOH . E 4 HOH A 23 623 623 HOH HOH . E 4 HOH A 24 624 634 HOH HOH . E 4 HOH A 25 625 626 HOH HOH . E 4 HOH A 26 626 624 HOH HOH . E 4 HOH A 27 627 628 HOH HOH . E 4 HOH A 28 628 613 HOH HOH . E 4 HOH A 29 629 621 HOH HOH . E 4 HOH A 30 630 632 HOH HOH . E 4 HOH A 31 631 633 HOH HOH . E 4 HOH A 32 632 631 HOH HOH . E 4 HOH A 33 633 638 HOH HOH . E 4 HOH A 34 634 635 HOH HOH . E 4 HOH A 35 635 629 HOH HOH . E 4 HOH A 36 636 639 HOH HOH . E 4 HOH A 37 637 637 HOH HOH . E 4 HOH A 38 638 608 HOH HOH . E 4 HOH A 39 639 630 HOH HOH . E 4 HOH A 40 640 640 HOH HOH . E 4 HOH A 41 641 641 HOH HOH . E 4 HOH A 42 642 636 HOH HOH . E 4 HOH A 43 643 642 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S SAK DWZ . . . D 3 -24.369 24.77 -42.998 1 73.63 ? SAK DWZ 503 A 1 HETATM 2 C CAI DWZ . . . D 3 -25.792 23.591 -42.523 1 73.63 ? CAI DWZ 503 A 1 HETATM 3 C CAH DWZ . . . D 3 -27.006 24.278 -41.884 1 73.63 ? CAH DWZ 503 A 1 HETATM 4 C CAS DWZ . . . D 3 -27.628 23.385 -40.794 1 73.63 ? CAS DWZ 503 A 1 HETATM 5 C CAL DWZ . . . D 3 -26.341 22.992 -43.807 1 73.63 ? CAL DWZ 503 A 1 HETATM 6 C CAM DWZ . . . D 3 -25.612 21.964 -44.66 1 73.63 ? CAM DWZ 503 A 1 HETATM 7 O OAT DWZ . . . D 3 -25.816 21.917 -45.891 1 73.63 ? OAT DWZ 503 A 1 HETATM 8 O OAU DWZ . . . D 3 -24.782 21.156 -44.128 1 73.63 ? OAU DWZ 503 A 1 HETATM 9 N NAJ DWZ . . . D 3 -27.509 23.441 -44.152 1 73.63 ? NAJ DWZ 503 A 1 HETATM 10 C CAD DWZ . . . D 3 -27.889 24.423 -43.124 1 73.63 ? CAD DWZ 503 A 1 HETATM 11 C CAB DWZ . . . D 3 -29.341 24.627 -42.914 1 73.63 ? CAB DWZ 503 A 1 HETATM 12 C CAE DWZ . . . D 3 -29.64 25.955 -42.191 1 73.63 ? CAE DWZ 503 A 1 HETATM 13 C CAF DWZ . . . D 3 -29.682 27.104 -43.124 1 73.63 ? CAF DWZ 503 A 1 HETATM 14 O OAG DWZ . . . D 3 -30.907 25.87 -41.52 1 73.63 ? OAG DWZ 503 A 1 HETATM 15 C CAA DWZ . . . D 3 -30.075 24.614 -44.255 1 73.63 ? CAA DWZ 503 A 1 HETATM 16 O OAC DWZ . . . D 3 -29.598 25.103 -45.247 1 73.63 ? OAC DWZ 503 A 1 HETATM 17 H HAI DWZ . . . D 3 -25.275 22.965 -41.911 1 73.63 ? HAI DWZ 503 A 1 HETATM 18 H HAH DWZ . . . D 3 -26.771 25.124 -41.538 1 73.63 ? HAH DWZ 503 A 1 HETATM 19 H HAS DWZ . . . D 3 -28.446 23.788 -40.47 1 73.63 ? HAS DWZ 503 A 1 HETATM 20 H HASA DWZ . . . D 3 -26.962 23.282 -40.015 1 73.63 ? HASA DWZ 503 A 1 HETATM 21 H HASB DWZ . . . D 3 -27.824 22.521 -41.165 1 73.63 ? HASB DWZ 503 A 1 HETATM 22 H HAD DWZ . . . D 3 -27.709 25.343 -43.512 1 73.63 ? HAD DWZ 503 A 1 HETATM 23 H HAB DWZ . . . D 3 -29.664 23.928 -42.393 1 73.63 ? HAB DWZ 503 A 1 HETATM 24 H HAE DWZ . . . D 3 -28.924 26.12 -41.512 1 73.63 ? HAE DWZ 503 A 1 HETATM 25 H HAF DWZ . . . D 3 -29.6 27.98 -42.59 1 73.63 ? HAF DWZ 503 A 1 HETATM 26 H HAFA DWZ . . . D 3 -28.943 27.034 -43.752 1 73.63 ? HAFA DWZ 503 A 1 HETATM 27 H HAFB DWZ . . . D 3 -30.534 27.099 -43.618 1 73.63 ? HAFB DWZ 503 A 1 HETATM 28 H HOAG DWZ . . . D 3 -31.568 25.916 -42.123 1 73.63 ? HOAG DWZ 503 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #