data_4ZFR # _model_server_result.job_id 3L3zpEashmH7rGs0oUDpVQ _model_server_result.datetime_utc '2024-11-29 00:52:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zfr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 4ZFR # _exptl.entry_id 4ZFR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.3 _cell.angle_gamma 90 _cell.entry_id 4ZFR _cell.length_a 42.139 _cell.length_b 58.174 _cell.length_c 56.442 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZFR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 103 A HIS 341 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc2 A NE2 HIS 105 A HIS 343 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? metalc ? metalc3 A OD2 ASP 116 A ASP 354 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.834 ? metalc ? metalc4 A NE2 HIS 118 A HIS 356 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc5 A SG CYS 159 A CYS 397 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc6 A NE2 HIS 166 A HIS 404 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc7 A NE2 HIS 168 A HIS 406 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.835 ? metalc ? metalc8 D ZN ZN . A ZN 502 1_555 B OXT GLY 81 B GLY 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4ZFR _atom_sites.fract_transf_matrix[1][1] 0.023731 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008312 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01719 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018773 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 501 501 ZN ZN . D 3 ZN A 1 502 502 ZN ZN . E 4 EDO A 1 503 503 EDO EDO . F 4 EDO B 1 101 101 EDO EDO . G 5 HOH A 1 601 601 HOH HOH . G 5 HOH A 2 602 602 HOH HOH . G 5 HOH A 3 603 603 HOH HOH . G 5 HOH A 4 604 604 HOH HOH . G 5 HOH A 5 605 605 HOH HOH . G 5 HOH A 6 606 606 HOH HOH . G 5 HOH A 7 607 607 HOH HOH . G 5 HOH A 8 608 608 HOH HOH . G 5 HOH A 9 609 609 HOH HOH . G 5 HOH A 10 610 610 HOH HOH . G 5 HOH A 11 611 611 HOH HOH . G 5 HOH A 12 612 612 HOH HOH . G 5 HOH A 13 613 613 HOH HOH . G 5 HOH A 14 614 614 HOH HOH . G 5 HOH A 15 615 615 HOH HOH . G 5 HOH A 16 616 616 HOH HOH . G 5 HOH A 17 617 617 HOH HOH . G 5 HOH A 18 618 618 HOH HOH . G 5 HOH A 19 619 619 HOH HOH . G 5 HOH A 20 620 620 HOH HOH . G 5 HOH A 21 621 621 HOH HOH . G 5 HOH A 22 622 622 HOH HOH . G 5 HOH A 23 623 623 HOH HOH . G 5 HOH A 24 624 624 HOH HOH . G 5 HOH A 25 625 625 HOH HOH . G 5 HOH A 26 626 626 HOH HOH . H 5 HOH B 1 201 201 HOH HOH . H 5 HOH B 2 202 202 HOH HOH . H 5 HOH B 3 203 203 HOH HOH . H 5 HOH B 4 204 204 HOH HOH . H 5 HOH B 5 205 205 HOH HOH . H 5 HOH B 6 206 206 HOH HOH . H 5 HOH B 7 207 207 HOH HOH . H 5 HOH B 8 208 208 HOH HOH . H 5 HOH B 9 209 209 HOH HOH . H 5 HOH B 10 210 210 HOH HOH . H 5 HOH B 11 211 211 HOH HOH . H 5 HOH B 12 212 212 HOH HOH . H 5 HOH B 13 213 213 HOH HOH . H 5 HOH B 14 214 214 HOH HOH . H 5 HOH B 15 215 215 HOH HOH . H 5 HOH B 16 216 216 HOH HOH . H 5 HOH B 17 217 217 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 19.518 9.777 26.509 1 37.94 ? C1 EDO 503 A 1 HETATM 2 O O1 EDO . . . E 4 18.127 9.567 26.543 1 40.58 ? O1 EDO 503 A 1 HETATM 3 C C2 EDO . . . E 4 20.096 8.644 25.634 1 40.02 ? C2 EDO 503 A 1 HETATM 4 O O2 EDO . . . E 4 21.461 8.805 25.29 1 34.2 ? O2 EDO 503 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #