data_4ZFX # _model_server_result.job_id X3LlqNI4iRf3r27gr_m4Zw _model_server_result.datetime_utc '2024-11-29 04:59:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zfx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":202}' # _entry.id 4ZFX # _exptl.entry_id 4ZFX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 669.546 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N,N',N''-[(3S,7S,11S)-2,6,10-trioxo-1,5,9-trioxacyclododecane-3,7,11-triyl]tris(2,3-dihydroxybenzamide)" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZFX _cell.length_a 114.53 _cell.length_b 114.53 _cell.length_c 119.496 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZFX _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 78 A CYS 76 1_555 A SG CYS 177 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf2 B SG CYS 78 B CYS 76 1_555 B SG CYS 177 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 C SG CYS 78 C CYS 76 1_555 C SG CYS 177 C CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C30 H27 N3 O15' _chem_comp.formula_weight 669.546 _chem_comp.id EB4 _chem_comp.mon_nstd_flag . _chem_comp.name "N,N',N''-[(3S,7S,11S)-2,6,10-trioxo-1,5,9-trioxacyclododecane-3,7,11-triyl]tris(2,3-dihydroxybenzamide)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Enterobactin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C6 EB4 sing 83 n n O6 HO6 EB4 sing 84 n n O4 HO4 EB4 sing 85 n n O5 C5 EB4 sing 86 n n O5 HO5 EB4 sing 87 n n N1 C22 EB4 sing 88 n n N1 HN1 EB4 sing 89 n n C5 C2 EB4 doub 90 n y C5 C8 EB4 sing 91 n y C4 O4 EB4 sing 92 n n C4 C1 EB4 sing 93 n y C1 O1 EB4 sing 94 n n C2 C17 EB4 sing 95 n y C6 C3 EB4 sing 96 n y C8 C11 EB4 doub 97 n y C8 H8 EB4 sing 98 n n N2 C23 EB4 sing 99 n n N2 HN2 EB4 sing 100 n n C9 C6 EB4 doub 101 n y C9 C12 EB4 sing 102 n y C9 H9 EB4 sing 103 n n C10 C7 EB4 sing 104 n y C10 C13 EB4 doub 105 n y C10 H10 EB4 sing 106 n n O3 HO3 EB4 sing 107 n n N3 C21 EB4 sing 108 n n N3 C24 EB4 sing 109 n n N3 HN3 EB4 sing 110 n n C16 C1 EB4 doub 111 n y C16 C19 EB4 sing 112 n n C7 C4 EB4 doub 113 n y C7 H7 EB4 sing 114 n n C3 O3 EB4 sing 115 n n C3 C18 EB4 doub 116 n y C11 C14 EB4 sing 117 n y C11 H11 EB4 sing 118 n n O1 HO1 EB4 sing 119 n n O2 C2 EB4 sing 120 n n O2 HO2 EB4 sing 121 n n C12 C15 EB4 doub 122 n y C12 H12 EB4 sing 123 n n C15 C18 EB4 sing 124 n y C15 H15 EB4 sing 125 n n C14 H14 EB4 sing 126 n n C13 C16 EB4 sing 127 n y C13 H13 EB4 sing 128 n n O7 C19 EB4 doub 129 n n C19 N1 EB4 sing 130 n n C22 C25 EB4 sing 131 n n C22 C28 EB4 sing 132 n n C22 H22 EB4 sing 133 n n C25 O15 EB4 sing 134 n n O10 C25 EB4 doub 135 n n O15 C30 EB4 sing 136 n n C30 C24 EB4 sing 137 n n C30 H30 EB4 sing 138 n n C30 H30A EB4 sing 139 n n C24 H24 EB4 sing 140 n n C21 O9 EB4 doub 141 n n C18 C21 EB4 sing 142 n n C27 C24 EB4 sing 143 n n C27 O14 EB4 sing 144 n n O12 C27 EB4 doub 145 n n C28 H28 EB4 sing 146 n n C28 H28A EB4 sing 147 n n O13 C28 EB4 sing 148 n n O13 C26 EB4 sing 149 n n C26 C23 EB4 sing 150 n n O11 C26 EB4 doub 151 n n C23 C29 EB4 sing 152 n n C23 H23 EB4 sing 153 n n C29 O14 EB4 sing 154 n n C29 H29 EB4 sing 155 n n C29 H29A EB4 sing 156 n n C20 N2 EB4 sing 157 n n O8 C20 EB4 doub 158 n n C17 C14 EB4 doub 159 n y C17 C20 EB4 sing 160 n n # _atom_sites.entry_id 4ZFX _atom_sites.fract_transf_matrix[1][1] 0.008731 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008731 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008368 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 TH A 1 201 200 TH TH . E 3 EB4 A 1 202 300 EB4 ENT . F 2 TH B 1 200 200 TH TH . G 2 TH C 1 201 200 TH TH . H 3 EB4 C 1 202 300 EB4 ENT . I 4 SO4 C 1 203 1 SO4 SO4 . J 5 HOH A 1 301 1 HOH HOH . J 5 HOH A 2 302 19 HOH HOH . J 5 HOH A 3 303 4 HOH HOH . J 5 HOH A 4 304 8 HOH HOH . K 5 HOH C 1 301 7 HOH HOH . K 5 HOH C 2 302 21 HOH HOH . K 5 HOH C 3 303 3 HOH HOH . K 5 HOH C 4 304 17 HOH HOH . K 5 HOH C 5 305 12 HOH HOH . K 5 HOH C 6 306 9 HOH HOH . K 5 HOH C 7 307 16 HOH HOH . K 5 HOH C 8 308 2 HOH HOH . K 5 HOH C 9 309 6 HOH HOH . K 5 HOH C 10 310 5 HOH HOH . K 5 HOH C 11 311 14 HOH HOH . K 5 HOH C 12 312 10 HOH HOH . K 5 HOH C 13 313 18 HOH HOH . K 5 HOH C 14 314 13 HOH HOH . K 5 HOH C 15 315 15 HOH HOH . K 5 HOH C 16 316 20 HOH HOH . K 5 HOH C 17 317 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 EB4 . . . H 3 49.247 40.577 44.126 1 24.94 ? O5 EB4 202 C 1 HETATM 2 C C5 EB4 . . . H 3 50.581 40.706 44.075 1 31.03 ? C5 EB4 202 C 1 HETATM 3 C C2 EB4 . . . H 3 51.423 40.143 43.141 1 31.51 ? C2 EB4 202 C 1 HETATM 4 C C8 EB4 . . . H 3 51.095 41.603 45.038 1 34.55 ? C8 EB4 202 C 1 HETATM 5 N N2 EB4 . . . H 3 53.317 38.633 41.674 1 46.92 ? N2 EB4 202 C 1 HETATM 6 C C11 EB4 . . . H 3 52.438 41.863 45.081 1 33.15 ? C11 EB4 202 C 1 HETATM 7 O O2 EB4 . . . H 3 51.041 39.298 42.158 1 43.14 ? O2 EB4 202 C 1 HETATM 8 C C14 EB4 . . . H 3 53.285 41.287 44.166 1 32.6 ? C14 EB4 202 C 1 HETATM 9 O O13 EB4 . . . H 3 52.464 36.261 39.893 1 54.03 ? O13 EB4 202 C 1 HETATM 10 C C26 EB4 . . . H 3 53.324 37.181 39.827 1 59.58 ? C26 EB4 202 C 1 HETATM 11 O O11 EB4 . . . H 3 53.555 37.984 38.627 1 52.77 ? O11 EB4 202 C 1 HETATM 12 C C23 EB4 . . . H 3 54.143 37.624 41.007 1 52.94 ? C23 EB4 202 C 1 HETATM 13 C C29 EB4 . . . H 3 54.465 36.426 41.905 1 46.29 ? C29 EB4 202 C 1 HETATM 14 C C20 EB4 . . . H 3 53.747 39.758 42.259 1 39.38 ? C20 EB4 202 C 1 HETATM 15 O O8 EB4 . . . H 3 54.897 40.126 42.248 1 34.18 ? O8 EB4 202 C 1 HETATM 16 C C17 EB4 . . . H 3 52.779 40.45 43.182 1 38.54 ? C17 EB4 202 C 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #