data_4ZG3 # _model_server_result.job_id HRKy61WX9Abffo8UxeIbOQ _model_server_result.datetime_utc '2025-04-03 06:46:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zg3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":308}' # _entry.id 4ZG3 # _exptl.entry_id 4ZG3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZG3 _cell.length_a 57.842 _cell.length_b 57.842 _cell.length_c 150.37 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZG3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 9 1_555 A SG CYS 204 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 66 A CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 71 A CYS 71 1_555 A SG CYS 77 A CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 A SG CYS 121 A CYS 121 1_555 A SG CYS 193 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 A SG CYS 126 A CYS 126 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 A SG CYS 134 A CYS 134 1_555 A SG CYS 145 A CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf7 A SG CYS 149 A CYS 149 1_555 A SG CYS 158 A CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 A SG CYS 159 A CYS 159 1_555 A SG CYS 164 A CYS 164 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf9 A SG CYS 159 A CYS 159 1_555 A SG CYS 164 A CYS 164 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A OD1 ASP 70 A ASP 70 1_555 F NA NA . A NA 305 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc2 A OD1 ASP 70 A ASP 70 1_555 F NA NA . A NA 305 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.982 ? metalc ? metalc3 A O LEU 74 A LEU 74 1_555 F NA NA . A NA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc4 A O THR 86 A THR 86 1_555 J NA NA . A NA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc5 A OE2 GLU 89 A GLU 89 1_555 I NA NA . A NA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc6 A OG SER 103 A SER 103 1_555 I NA NA . A NA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc7 A OD1 ASN 109 A ASN 109 1_555 J NA NA . A NA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc8 A OG1 THR 206 A THR 206 1_555 H NA NA . A NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc9 G NA NA . A NA 306 1_555 L O HOH . A HOH 424 8_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc10 G NA NA . A NA 306 1_555 L O HOH . A HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? metalc ? metalc11 H NA NA . A NA 307 1_555 L O HOH . A HOH 591 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc12 I NA NA . A NA 308 1_555 L O HOH . A HOH 592 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc13 K NA NA . A NA 310 1_555 L O HOH . A HOH 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? metalc ? metalc14 K NA NA . A NA 310 1_555 L O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4ZG3 _atom_sites.fract_transf_matrix[1][1] 0.017288 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017288 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00665 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TLA A 1 301 500 TLA TLA . C 2 TLA A 1 302 501 TLA TLA . D 3 GOL A 1 303 1210 GOL GOL . E 3 GOL A 1 304 1211 GOL GOL . F 4 NA A 1 305 1212 NA NA . G 4 NA A 1 306 1213 NA NA . H 4 NA A 1 307 1214 NA NA . I 4 NA A 1 308 1215 NA NA . J 4 NA A 1 309 1216 NA NA . K 4 NA A 1 310 1217 NA NA . L 5 HOH A 1 401 118 HOH HOH . L 5 HOH A 2 402 194 HOH HOH . L 5 HOH A 3 403 185 HOH HOH . L 5 HOH A 4 404 187 HOH HOH . L 5 HOH A 5 405 100 HOH HOH . L 5 HOH A 6 406 33 HOH HOH . L 5 HOH A 7 407 63 HOH HOH . L 5 HOH A 8 408 189 HOH HOH . L 5 HOH A 9 409 85 HOH HOH . L 5 HOH A 10 410 44 HOH HOH . L 5 HOH A 11 411 153 HOH HOH . L 5 HOH A 12 412 42 HOH HOH . L 5 HOH A 13 413 158 HOH HOH . L 5 HOH A 14 414 99 HOH HOH . L 5 HOH A 15 415 110 HOH HOH . L 5 HOH A 16 416 116 HOH HOH . L 5 HOH A 17 417 190 HOH HOH . L 5 HOH A 18 418 73 HOH HOH . L 5 HOH A 19 419 95 HOH HOH . L 5 HOH A 20 420 206 HOH HOH . L 5 HOH A 21 421 168 HOH HOH . L 5 HOH A 22 422 131 HOH HOH . L 5 HOH A 23 423 136 HOH HOH . L 5 HOH A 24 424 182 HOH HOH . L 5 HOH A 25 425 205 HOH HOH . L 5 HOH A 26 426 75 HOH HOH . L 5 HOH A 27 427 43 HOH HOH . L 5 HOH A 28 428 97 HOH HOH . L 5 HOH A 29 429 47 HOH HOH . L 5 HOH A 30 430 86 HOH HOH . L 5 HOH A 31 431 24 HOH HOH . L 5 HOH A 32 432 112 HOH HOH . L 5 HOH A 33 433 25 HOH HOH . L 5 HOH A 34 434 7 HOH HOH . L 5 HOH A 35 435 143 HOH HOH . L 5 HOH A 36 436 28 HOH HOH . L 5 HOH A 37 437 109 HOH HOH . L 5 HOH A 38 438 105 HOH HOH . L 5 HOH A 39 439 9 HOH HOH . L 5 HOH A 40 440 54 HOH HOH . L 5 HOH A 41 441 179 HOH HOH . L 5 HOH A 42 442 53 HOH HOH . L 5 HOH A 43 443 88 HOH HOH . L 5 HOH A 44 444 5 HOH HOH . L 5 HOH A 45 445 21 HOH HOH . L 5 HOH A 46 446 65 HOH HOH . L 5 HOH A 47 447 2 HOH HOH . L 5 HOH A 48 448 104 HOH HOH . L 5 HOH A 49 449 8 HOH HOH . L 5 HOH A 50 450 4 HOH HOH . L 5 HOH A 51 451 89 HOH HOH . L 5 HOH A 52 452 200 HOH HOH . L 5 HOH A 53 453 169 HOH HOH . L 5 HOH A 54 454 19 HOH HOH . L 5 HOH A 55 455 16 HOH HOH . L 5 HOH A 56 456 18 HOH HOH . L 5 HOH A 57 457 149 HOH HOH . L 5 HOH A 58 458 155 HOH HOH . L 5 HOH A 59 459 166 HOH HOH . L 5 HOH A 60 460 133 HOH HOH . L 5 HOH A 61 461 32 HOH HOH . L 5 HOH A 62 462 72 HOH HOH . L 5 HOH A 63 463 36 HOH HOH . L 5 HOH A 64 464 91 HOH HOH . L 5 HOH A 65 465 3 HOH HOH . L 5 HOH A 66 466 56 HOH HOH . L 5 HOH A 67 467 121 HOH HOH . L 5 HOH A 68 468 106 HOH HOH . L 5 HOH A 69 469 74 HOH HOH . L 5 HOH A 70 470 49 HOH HOH . L 5 HOH A 71 471 81 HOH HOH . L 5 HOH A 72 472 98 HOH HOH . L 5 HOH A 73 473 23 HOH HOH . L 5 HOH A 74 474 108 HOH HOH . L 5 HOH A 75 475 161 HOH HOH . L 5 HOH A 76 476 103 HOH HOH . L 5 HOH A 77 477 69 HOH HOH . L 5 HOH A 78 478 102 HOH HOH . L 5 HOH A 79 479 27 HOH HOH . L 5 HOH A 80 480 117 HOH HOH . L 5 HOH A 81 481 31 HOH HOH . L 5 HOH A 82 482 6 HOH HOH . L 5 HOH A 83 483 115 HOH HOH . L 5 HOH A 84 484 57 HOH HOH . L 5 HOH A 85 485 101 HOH HOH . L 5 HOH A 86 486 66 HOH HOH . L 5 HOH A 87 487 70 HOH HOH . L 5 HOH A 88 488 14 HOH HOH . L 5 HOH A 89 489 80 HOH HOH . L 5 HOH A 90 490 17 HOH HOH . L 5 HOH A 91 491 122 HOH HOH . L 5 HOH A 92 492 90 HOH HOH . L 5 HOH A 93 493 26 HOH HOH . L 5 HOH A 94 494 15 HOH HOH . L 5 HOH A 95 495 13 HOH HOH . L 5 HOH A 96 496 10 HOH HOH . L 5 HOH A 97 497 79 HOH HOH . L 5 HOH A 98 498 94 HOH HOH . L 5 HOH A 99 499 55 HOH HOH . L 5 HOH A 100 500 39 HOH HOH . L 5 HOH A 101 501 192 HOH HOH . L 5 HOH A 102 502 52 HOH HOH . L 5 HOH A 103 503 82 HOH HOH . L 5 HOH A 104 504 111 HOH HOH . L 5 HOH A 105 505 76 HOH HOH . L 5 HOH A 106 506 64 HOH HOH . L 5 HOH A 107 507 60 HOH HOH . L 5 HOH A 108 508 184 HOH HOH . L 5 HOH A 109 509 41 HOH HOH . L 5 HOH A 110 510 160 HOH HOH . L 5 HOH A 111 511 20 HOH HOH . L 5 HOH A 112 512 12 HOH HOH . L 5 HOH A 113 513 40 HOH HOH . L 5 HOH A 114 514 162 HOH HOH . L 5 HOH A 115 515 37 HOH HOH . L 5 HOH A 116 516 92 HOH HOH . L 5 HOH A 117 517 11 HOH HOH . L 5 HOH A 118 518 188 HOH HOH . L 5 HOH A 119 519 45 HOH HOH . L 5 HOH A 120 520 78 HOH HOH . L 5 HOH A 121 521 120 HOH HOH . L 5 HOH A 122 522 176 HOH HOH . L 5 HOH A 123 523 62 HOH HOH . L 5 HOH A 124 524 87 HOH HOH . L 5 HOH A 125 525 84 HOH HOH . L 5 HOH A 126 526 150 HOH HOH . L 5 HOH A 127 527 35 HOH HOH . L 5 HOH A 128 528 34 HOH HOH . L 5 HOH A 129 529 67 HOH HOH . L 5 HOH A 130 530 123 HOH HOH . L 5 HOH A 131 531 163 HOH HOH . L 5 HOH A 132 532 58 HOH HOH . L 5 HOH A 133 533 191 HOH HOH . L 5 HOH A 134 534 165 HOH HOH . L 5 HOH A 135 535 159 HOH HOH . L 5 HOH A 136 536 96 HOH HOH . L 5 HOH A 137 537 83 HOH HOH . L 5 HOH A 138 538 171 HOH HOH . L 5 HOH A 139 539 107 HOH HOH . L 5 HOH A 140 540 157 HOH HOH . L 5 HOH A 141 541 142 HOH HOH . L 5 HOH A 142 542 183 HOH HOH . L 5 HOH A 143 543 29 HOH HOH . L 5 HOH A 144 544 38 HOH HOH . L 5 HOH A 145 545 22 HOH HOH . L 5 HOH A 146 546 46 HOH HOH . L 5 HOH A 147 547 137 HOH HOH . L 5 HOH A 148 548 186 HOH HOH . L 5 HOH A 149 549 59 HOH HOH . L 5 HOH A 150 550 51 HOH HOH . L 5 HOH A 151 551 77 HOH HOH . L 5 HOH A 152 552 151 HOH HOH . L 5 HOH A 153 553 1 HOH HOH . L 5 HOH A 154 554 135 HOH HOH . L 5 HOH A 155 555 48 HOH HOH . L 5 HOH A 156 556 114 HOH HOH . L 5 HOH A 157 557 61 HOH HOH . L 5 HOH A 158 558 50 HOH HOH . L 5 HOH A 159 559 68 HOH HOH . L 5 HOH A 160 560 139 HOH HOH . L 5 HOH A 161 561 71 HOH HOH . L 5 HOH A 162 562 177 HOH HOH . L 5 HOH A 163 563 204 HOH HOH . L 5 HOH A 164 564 203 HOH HOH . L 5 HOH A 165 565 201 HOH HOH . L 5 HOH A 166 566 173 HOH HOH . L 5 HOH A 167 567 130 HOH HOH . L 5 HOH A 168 568 119 HOH HOH . L 5 HOH A 169 569 145 HOH HOH . L 5 HOH A 170 570 93 HOH HOH . L 5 HOH A 171 571 138 HOH HOH . L 5 HOH A 172 572 199 HOH HOH . L 5 HOH A 173 573 30 HOH HOH . L 5 HOH A 174 574 181 HOH HOH . L 5 HOH A 175 575 172 HOH HOH . L 5 HOH A 176 576 140 HOH HOH . L 5 HOH A 177 577 113 HOH HOH . L 5 HOH A 178 578 134 HOH HOH . L 5 HOH A 179 579 154 HOH HOH . L 5 HOH A 180 580 167 HOH HOH . L 5 HOH A 181 581 164 HOH HOH . L 5 HOH A 182 582 156 HOH HOH . L 5 HOH A 183 583 127 HOH HOH . L 5 HOH A 184 584 148 HOH HOH . L 5 HOH A 185 585 144 HOH HOH . L 5 HOH A 186 586 196 HOH HOH . L 5 HOH A 187 587 129 HOH HOH . L 5 HOH A 188 588 197 HOH HOH . L 5 HOH A 189 589 152 HOH HOH . L 5 HOH A 190 590 193 HOH HOH . L 5 HOH A 191 591 128 HOH HOH . L 5 HOH A 192 592 178 HOH HOH . L 5 HOH A 193 593 147 HOH HOH . L 5 HOH A 194 594 198 HOH HOH . L 5 HOH A 195 595 195 HOH HOH . L 5 HOH A 196 596 174 HOH HOH . L 5 HOH A 197 597 202 HOH HOH . L 5 HOH A 198 598 146 HOH HOH . L 5 HOH A 199 599 170 HOH HOH . L 5 HOH A 200 600 180 HOH HOH . L 5 HOH A 201 601 175 HOH HOH . L 5 HOH A 202 602 124 HOH HOH . L 5 HOH A 203 603 125 HOH HOH . L 5 HOH A 204 604 132 HOH HOH . L 5 HOH A 205 605 126 HOH HOH . L 5 HOH A 206 606 141 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 4 _atom_site.Cartn_x 5.145 _atom_site.Cartn_y 15.403 _atom_site.Cartn_z 34.765 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.9 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 308 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #