data_4ZGA # _model_server_result.job_id DMG10i4XSyn-IPqA3NOimQ _model_server_result.datetime_utc '2024-11-24 08:30:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zga # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":910}' # _entry.id 4ZGA # _exptl.entry_id 4ZGA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 349.358 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(11aS)-6-(4-fluorobenzyl)-5,6,11,11a-tetrahydro-1H-imidazo[1',5':1,6]pyrido[3,4-b]indole-1,3(2H)-dione" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 99.44 _cell.angle_beta 108.39 _cell.angle_gamma 98.61 _cell.entry_id 4ZGA _cell.length_a 53.672 _cell.length_b 64.001 _cell.length_c 70.505 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZGA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 901 NAG 2 n B NAG 2 B 2 NAG A 902 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 59 A CYS 59 1_555 A SG CYS 76 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf2 A SG CYS 63 A CYS 63 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 74 A CYS 74 1_555 A SG CYS 87 A CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 80 A CYS 80 1_555 A SG CYS 86 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf5 A SG CYS 103 A CYS 103 1_555 A SG CYS 120 A CYS 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 A SG CYS 108 A CYS 108 1_555 A SG CYS 138 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf7 A SG CYS 118 A CYS 118 1_555 A SG CYS 131 A CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf8 A SG CYS 124 A CYS 124 1_555 A SG CYS 130 A CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 A SG CYS 149 A CYS 149 1_555 A SG CYS 195 A CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf10 A SG CYS 157 A CYS 157 1_555 A SG CYS 351 A CYS 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf11 A SG CYS 414 A CYS 414 1_555 A SG CYS 806 A CYS 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf12 A SG CYS 775 A CYS 775 1_555 A SG CYS 785 A CYS 785 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A ND2 ASN 525 A ASN 525 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.254 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? metalc ? metalc1 A OD1 ASP 312 A ASP 312 1_555 C ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc2 A NE2 HIS 316 A HIS 316 1_555 C ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc3 A NE2 HIS 475 A HIS 475 1_555 C ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc4 A O TYR 670 A TYR 670 1_555 H CA CA . A CA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? metalc ? metalc5 A O ASP 673 A ASP 673 1_555 H CA CA . A CA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc6 A O MET 676 A MET 676 1_555 H CA CA . A CA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc7 A OD1 ASP 740 A ASP 740 1_555 D CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc8 A OD1 ASP 742 A ASP 742 1_555 D CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc9 A OD1 ASP 744 A ASP 744 1_555 D CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc10 A O LEU 746 A LEU 746 1_555 D CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc11 A OD1 ASP 748 A ASP 748 1_555 D CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc12 C ZN ZN . A ZN 903 1_555 E O1 EDO . A EDO 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? # _chem_comp.formula 'C20 H16 F N3 O2' _chem_comp.formula_weight 349.358 _chem_comp.id 4O3 _chem_comp.mon_nstd_flag . _chem_comp.name "(11aS)-6-(4-fluorobenzyl)-5,6,11,11a-tetrahydro-1H-imidazo[1',5':1,6]pyrido[3,4-b]indole-1,3(2H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F C 4O3 sing 1 n n C3 C 4O3 doub 2 n y C3 C4 4O3 sing 3 n y C C1 4O3 sing 4 n y C4 C5 4O3 doub 5 n y C1 C2 4O3 doub 6 n y C5 C2 4O3 sing 7 n y C5 C6 4O3 sing 8 n n C6 N 4O3 sing 9 n n O1 C16 4O3 doub 10 n n C15 N1 4O3 sing 11 n n C15 C14 4O3 sing 12 n n N C14 4O3 sing 13 n y N C7 4O3 sing 14 n y C16 N1 4O3 sing 15 n n C16 N2 4O3 sing 16 n n N1 C18 4O3 sing 17 n n C14 C13 4O3 doub 18 n y C7 C12 4O3 doub 19 n y C7 C8 4O3 sing 20 n y N2 C17 4O3 sing 21 n n C12 C11 4O3 sing 22 n y C18 C17 4O3 sing 23 n n C18 C19 4O3 sing 24 n n C13 C8 4O3 sing 25 n y C13 C19 4O3 sing 26 n n C17 O 4O3 doub 27 n n C8 C9 4O3 doub 28 n y C11 C10 4O3 doub 29 n y C9 C10 4O3 sing 30 n y C15 H1 4O3 sing 31 n n C15 H2 4O3 sing 32 n n N2 H3 4O3 sing 33 n n C18 H4 4O3 sing 34 n n C19 H5 4O3 sing 35 n n C19 H6 4O3 sing 36 n n C9 H7 4O3 sing 37 n n C10 H8 4O3 sing 38 n n C11 H9 4O3 sing 39 n n C12 H10 4O3 sing 40 n n C6 H11 4O3 sing 41 n n C6 H12 4O3 sing 42 n n C2 H13 4O3 sing 43 n n C1 H14 4O3 sing 44 n n C4 H15 4O3 sing 45 n n C3 H16 4O3 sing 46 n n # _atom_sites.entry_id 4ZGA _atom_sites.fract_transf_matrix[1][1] 0.018632 _atom_sites.fract_transf_matrix[1][2] 0.00282 _atom_sites.fract_transf_matrix[1][3] 0.007011 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015803 _atom_sites.fract_transf_matrix[2][3] 0.003653 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015341 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 903 1 ZN ZN . D 4 CA A 1 904 2 CA CA . E 5 EDO A 1 905 3 EDO EDO . F 6 SCN A 1 906 4 SCN SCN . G 6 SCN A 1 907 5 SCN SCN . H 4 CA A 1 908 6 CA CA . I 7 ACD A 1 909 1 ACD ARA . J 8 4O3 A 1 910 2 4O3 494 . K 9 HOH A 1 1001 15 HOH HOH . K 9 HOH A 2 1002 14 HOH HOH . K 9 HOH A 3 1003 16 HOH HOH . K 9 HOH A 4 1004 3 HOH HOH . K 9 HOH A 5 1005 7 HOH HOH . K 9 HOH A 6 1006 2 HOH HOH . K 9 HOH A 7 1007 10 HOH HOH . K 9 HOH A 8 1008 5 HOH HOH . K 9 HOH A 9 1009 1 HOH HOH . K 9 HOH A 10 1010 8 HOH HOH . K 9 HOH A 11 1011 9 HOH HOH . K 9 HOH A 12 1012 17 HOH HOH . K 9 HOH A 13 1013 13 HOH HOH . K 9 HOH A 14 1014 6 HOH HOH . K 9 HOH A 15 1015 11 HOH HOH . K 9 HOH A 16 1016 12 HOH HOH . K 9 HOH A 17 1017 4 HOH HOH . K 9 HOH A 18 1018 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 4O3 . . . J 8 6.028 65.584 24.212 1 50.4 ? C15 4O3 910 A 1 HETATM 2 C C17 4O3 . . . J 8 6.586 67.985 26.733 1 58.79 ? C17 4O3 910 A 1 HETATM 3 O O1 4O3 . . . J 8 7.722 67.939 23.616 1 58.63 ? O1 4O3 910 A 1 HETATM 4 C C16 4O3 . . . J 8 7.189 67.757 24.758 1 55.06 ? C16 4O3 910 A 1 HETATM 5 N N2 4O3 . . . J 8 7.333 68.6 25.809 1 58.29 ? N2 4O3 910 A 1 HETATM 6 O O 4O3 . . . J 8 6.424 68.491 27.898 1 65.77 ? O 4O3 910 A 1 HETATM 7 C C18 4O3 . . . J 8 5.859 66.762 26.403 1 57.95 ? C18 4O3 910 A 1 HETATM 8 C C19 4O3 . . . J 8 6.099 65.628 27.372 1 59.32 ? C19 4O3 910 A 1 HETATM 9 C C13 4O3 . . . J 8 6.083 64.391 26.552 1 55.23 ? C13 4O3 910 A 1 HETATM 10 C C8 4O3 . . . J 8 6.105 63.01 27.018 1 66.23 ? C8 4O3 910 A 1 HETATM 11 C C9 4O3 . . . J 8 6.126 62.439 28.284 1 62.21 ? C9 4O3 910 A 1 HETATM 12 C C10 4O3 . . . J 8 6.121 61.053 28.374 1 63.16 ? C10 4O3 910 A 1 HETATM 13 C C11 4O3 . . . J 8 6.123 60.249 27.232 1 62.29 ? C11 4O3 910 A 1 HETATM 14 C C12 4O3 . . . J 8 6.114 60.805 25.952 1 64.48 ? C12 4O3 910 A 1 HETATM 15 C C7 4O3 . . . J 8 6.097 62.202 25.792 1 67.37 ? C7 4O3 910 A 1 HETATM 16 N N1 4O3 . . . J 8 6.429 66.711 25.03 1 52.11 ? N1 4O3 910 A 1 HETATM 17 C C14 4O3 . . . J 8 6.067 64.345 25.096 1 54.02 ? C14 4O3 910 A 1 HETATM 18 N N 4O3 . . . J 8 6.065 63.048 24.731 1 60.75 ? N 4O3 910 A 1 HETATM 19 C C6 4O3 . . . J 8 6.087 62.58 23.341 1 56.13 ? C6 4O3 910 A 1 HETATM 20 C C5 4O3 . . . J 8 4.734 62.386 22.771 1 58.44 ? C5 4O3 910 A 1 HETATM 21 C C2 4O3 . . . J 8 4.076 61.177 22.97 1 59.01 ? C2 4O3 910 A 1 HETATM 22 C C1 4O3 . . . J 8 2.817 60.994 22.427 1 57.38 ? C1 4O3 910 A 1 HETATM 23 C C4 4O3 . . . J 8 4.155 63.415 22.047 1 59.28 ? C4 4O3 910 A 1 HETATM 24 C C3 4O3 . . . J 8 2.896 63.222 21.507 1 57.07 ? C3 4O3 910 A 1 HETATM 25 C C 4O3 . . . J 8 2.234 62.026 21.7 1 57.98 ? C 4O3 910 A 1 HETATM 26 F F 4O3 . . . J 8 1.017 61.851 21.165 1 64.29 ? F 4O3 910 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #