data_4ZGK # _model_server_result.job_id JPfAKqEbx5YCtz6cSz70aQ _model_server_result.datetime_utc '2024-12-21 14:15:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zgk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4ZGK # _exptl.entry_id 4ZGK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 498.785 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5R)-3,5-bis(4-chlorobenzyl)-4-(6-chloro-1H-indol-3-yl)-5-hydroxyfuran-2(5H)-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZGK _cell.length_a 36.61 _cell.length_b 56.55 _cell.length_c 97.31 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZGK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C26 H18 Cl3 N O3' _chem_comp.formula_weight 498.785 _chem_comp.id 4NX _chem_comp.mon_nstd_flag . _chem_comp.name (5R)-3,5-bis(4-chlorobenzyl)-4-(6-chloro-1H-indol-3-yl)-5-hydroxyfuran-2(5H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL2 C9 4NX sing 1 n n C10 C9 4NX doub 2 n y C10 C11 4NX sing 3 n y CL1 C40 4NX sing 4 n n C9 C8 4NX sing 5 n y C39 C40 4NX doub 6 n y C39 C38 4NX sing 7 n y C11 C6 4NX doub 8 n y C40 C41 4NX sing 9 n y O20 C16 4NX doub 10 n n C38 C37 4NX doub 11 n y C8 C7 4NX doub 12 n y C6 C7 4NX sing 13 n y C6 C5 4NX sing 14 n n C41 C42 4NX doub 15 n y C16 O18 4NX sing 16 n n C16 C15 4NX sing 17 n n O18 C13 4NX sing 18 n n C37 C42 4NX sing 19 n y C37 C28 4NX sing 20 n n C5 C13 4NX sing 21 n n C15 C28 4NX sing 22 n n C15 C14 4NX doub 23 n n C13 C14 4NX sing 24 n n C13 O21 4NX sing 25 n n C14 C44 4NX sing 26 n n C44 C48 4NX doub 27 n y C44 C45 4NX sing 28 n y C48 N49 4NX sing 29 n y N49 C46 4NX sing 30 n y C45 C59 4NX doub 31 n y C45 C46 4NX sing 32 n y C59 C58 4NX sing 33 n y C46 C56 4NX doub 34 n y C58 C57 4NX doub 35 n y C56 C57 4NX sing 36 n y C57 CL3 4NX sing 37 n n C39 H1 4NX sing 38 n n C38 H2 4NX sing 39 n n C41 H3 4NX sing 40 n n C42 H4 4NX sing 41 n n C28 H5 4NX sing 42 n n C28 H6 4NX sing 43 n n O21 H7 4NX sing 44 n n C5 H8 4NX sing 45 n n C5 H9 4NX sing 46 n n C11 H10 4NX sing 47 n n C10 H11 4NX sing 48 n n C7 H12 4NX sing 49 n n C8 H13 4NX sing 50 n n C48 H14 4NX sing 51 n n N49 H15 4NX sing 52 n n C56 H16 4NX sing 53 n n C58 H17 4NX sing 54 n n C59 H18 4NX sing 55 n n # _atom_sites.entry_id 4ZGK _atom_sites.fract_transf_matrix[1][1] 0.027315 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010276 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4NX A 1 201 2 4NX p2d . D 2 4NX B 1 201 1 4NX p2d . E 3 HOH A 1 301 135 HOH HOH . E 3 HOH A 2 302 7 HOH HOH . E 3 HOH A 3 303 34 HOH HOH . E 3 HOH A 4 304 163 HOH HOH . E 3 HOH A 5 305 148 HOH HOH . E 3 HOH A 6 306 12 HOH HOH . E 3 HOH A 7 307 84 HOH HOH . E 3 HOH A 8 308 11 HOH HOH . E 3 HOH A 9 309 138 HOH HOH . E 3 HOH A 10 310 173 HOH HOH . E 3 HOH A 11 311 213 HOH HOH . E 3 HOH A 12 312 125 HOH HOH . E 3 HOH A 13 313 243 HOH HOH . E 3 HOH A 14 314 53 HOH HOH . E 3 HOH A 15 315 52 HOH HOH . E 3 HOH A 16 316 86 HOH HOH . E 3 HOH A 17 317 13 HOH HOH . E 3 HOH A 18 318 1 HOH HOH . E 3 HOH A 19 319 101 HOH HOH . E 3 HOH A 20 320 55 HOH HOH . E 3 HOH A 21 321 65 HOH HOH . E 3 HOH A 22 322 35 HOH HOH . E 3 HOH A 23 323 130 HOH HOH . E 3 HOH A 24 324 97 HOH HOH . E 3 HOH A 25 325 56 HOH HOH . E 3 HOH A 26 326 131 HOH HOH . E 3 HOH A 27 327 6 HOH HOH . E 3 HOH A 28 328 221 HOH HOH . E 3 HOH A 29 329 43 HOH HOH . E 3 HOH A 30 330 60 HOH HOH . E 3 HOH A 31 331 140 HOH HOH . E 3 HOH A 32 332 96 HOH HOH . E 3 HOH A 33 333 57 HOH HOH . E 3 HOH A 34 334 244 HOH HOH . E 3 HOH A 35 335 66 HOH HOH . E 3 HOH A 36 336 133 HOH HOH . E 3 HOH A 37 337 158 HOH HOH . E 3 HOH A 38 338 233 HOH HOH . E 3 HOH A 39 339 188 HOH HOH . E 3 HOH A 40 340 83 HOH HOH . E 3 HOH A 41 341 8 HOH HOH . E 3 HOH A 42 342 129 HOH HOH . E 3 HOH A 43 343 63 HOH HOH . E 3 HOH A 44 344 237 HOH HOH . E 3 HOH A 45 345 9 HOH HOH . E 3 HOH A 46 346 225 HOH HOH . E 3 HOH A 47 347 134 HOH HOH . F 3 HOH B 1 301 47 HOH HOH . F 3 HOH B 2 302 74 HOH HOH . F 3 HOH B 3 303 209 HOH HOH . F 3 HOH B 4 304 190 HOH HOH . F 3 HOH B 5 305 73 HOH HOH . F 3 HOH B 6 306 18 HOH HOH . F 3 HOH B 7 307 145 HOH HOH . F 3 HOH B 8 308 164 HOH HOH . F 3 HOH B 9 309 99 HOH HOH . F 3 HOH B 10 310 245 HOH HOH . F 3 HOH B 11 311 127 HOH HOH . F 3 HOH B 12 312 136 HOH HOH . F 3 HOH B 13 313 242 HOH HOH . F 3 HOH B 14 314 54 HOH HOH . F 3 HOH B 15 315 2 HOH HOH . F 3 HOH B 16 316 189 HOH HOH . F 3 HOH B 17 317 28 HOH HOH . F 3 HOH B 18 318 25 HOH HOH . F 3 HOH B 19 319 155 HOH HOH . F 3 HOH B 20 320 104 HOH HOH . F 3 HOH B 21 321 202 HOH HOH . F 3 HOH B 22 322 22 HOH HOH . F 3 HOH B 23 323 106 HOH HOH . F 3 HOH B 24 324 150 HOH HOH . F 3 HOH B 25 325 17 HOH HOH . F 3 HOH B 26 326 77 HOH HOH . F 3 HOH B 27 327 152 HOH HOH . F 3 HOH B 28 328 71 HOH HOH . F 3 HOH B 29 329 123 HOH HOH . F 3 HOH B 30 330 206 HOH HOH . F 3 HOH B 31 331 160 HOH HOH . F 3 HOH B 32 332 27 HOH HOH . F 3 HOH B 33 333 20 HOH HOH . F 3 HOH B 34 334 23 HOH HOH . F 3 HOH B 35 335 70 HOH HOH . F 3 HOH B 36 336 230 HOH HOH . F 3 HOH B 37 337 228 HOH HOH . F 3 HOH B 38 338 143 HOH HOH . F 3 HOH B 39 339 102 HOH HOH . F 3 HOH B 40 340 26 HOH HOH . F 3 HOH B 41 341 166 HOH HOH . F 3 HOH B 42 342 137 HOH HOH . F 3 HOH B 43 343 208 HOH HOH . F 3 HOH B 44 344 193 HOH HOH . F 3 HOH B 45 345 62 HOH HOH . F 3 HOH B 46 346 21 HOH HOH . F 3 HOH B 47 347 15 HOH HOH . F 3 HOH B 48 348 75 HOH HOH . F 3 HOH B 49 349 3 HOH HOH . F 3 HOH B 50 350 157 HOH HOH . F 3 HOH B 51 351 205 HOH HOH . F 3 HOH B 52 352 38 HOH HOH . F 3 HOH B 53 353 235 HOH HOH . F 3 HOH B 54 354 210 HOH HOH . F 3 HOH B 55 355 240 HOH HOH . F 3 HOH B 56 356 222 HOH HOH . F 3 HOH B 57 357 227 HOH HOH . F 3 HOH B 58 358 24 HOH HOH . F 3 HOH B 59 359 192 HOH HOH . F 3 HOH B 60 360 61 HOH HOH . F 3 HOH B 61 361 203 HOH HOH . F 3 HOH B 62 362 121 HOH HOH . F 3 HOH B 63 363 191 HOH HOH . F 3 HOH B 64 364 223 HOH HOH . F 3 HOH B 65 365 156 HOH HOH . F 3 HOH B 66 366 241 HOH HOH . F 3 HOH B 67 367 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL1 4NX . . . C 2 11.991 2.538 -22.942 1 26.23 ? CL1 4NX 201 A 1 HETATM 2 C C40 4NX . . . C 2 10.659 3.257 -23.965 1 23.21 ? C40 4NX 201 A 1 HETATM 3 C C39 4NX . . . C 2 10.972 3.921 -25.169 1 22.82 ? C39 4NX 201 A 1 HETATM 4 C C38 4NX . . . C 2 9.958 4.47 -25.959 1 22.96 ? C38 4NX 201 A 1 HETATM 5 C C41 4NX . . . C 2 9.328 3.12 -23.585 1 22.8 ? C41 4NX 201 A 1 HETATM 6 C C42 4NX . . . C 2 8.308 3.669 -24.366 1 24.04 ? C42 4NX 201 A 1 HETATM 7 C C37 4NX . . . C 2 8.621 4.358 -25.55 1 23.73 ? C37 4NX 201 A 1 HETATM 8 C C28 4NX . . . C 2 7.548 4.99 -26.422 1 24.97 ? C28 4NX 201 A 1 HETATM 9 C C15 4NX . . . C 2 6.133 4.418 -26.236 1 23.57 ? C15 4NX 201 A 1 HETATM 10 C C16 4NX . . . C 2 5.3 4.786 -25.267 1 24.15 ? C16 4NX 201 A 1 HETATM 11 O O20 4NX . . . C 2 5.596 5.493 -24.335 1 27.13 ? O20 4NX 201 A 1 HETATM 12 O O18 4NX . . . C 2 3.989 4.167 -25.396 1 22.04 ? O18 4NX 201 A 1 HETATM 13 C C13 4NX . . . C 2 4.091 3.29 -26.504 1 22.85 ? C13 4NX 201 A 1 HETATM 14 O O21 4NX . . . C 2 3.108 3.665 -27.439 1 23.69 ? O21 4NX 201 A 1 HETATM 15 C C5 4NX . . . C 2 3.927 1.843 -26.062 1 22.55 ? C5 4NX 201 A 1 HETATM 16 C C6 4NX . . . C 2 4.946 1.387 -25.002 1 19.63 ? C6 4NX 201 A 1 HETATM 17 C C11 4NX . . . C 2 6.008 0.571 -25.337 1 20.14 ? C11 4NX 201 A 1 HETATM 18 C C10 4NX . . . C 2 6.94 0.133 -24.39 1 19.12 ? C10 4NX 201 A 1 HETATM 19 C C7 4NX . . . C 2 4.757 1.736 -23.68 1 19.99 ? C7 4NX 201 A 1 HETATM 20 C C8 4NX . . . C 2 5.655 1.291 -22.698 1 20.84 ? C8 4NX 201 A 1 HETATM 21 C C9 4NX . . . C 2 6.733 0.482 -23.059 1 20.92 ? C9 4NX 201 A 1 HETATM 22 CL CL2 4NX . . . C 2 7.838 -0.096 -21.781 1 22.2 ? CL2 4NX 201 A 1 HETATM 23 C C14 4NX . . . C 2 5.53 3.503 -27.005 1 22.37 ? C14 4NX 201 A 1 HETATM 24 C C44 4NX . . . C 2 6.261 2.817 -28.11 1 22.25 ? C44 4NX 201 A 1 HETATM 25 C C48 4NX . . . C 2 7.577 2.349 -28.168 1 22.82 ? C48 4NX 201 A 1 HETATM 26 N N49 4NX . . . C 2 7.801 1.795 -29.379 1 21.94 ? N49 4NX 201 A 1 HETATM 27 C C46 4NX . . . C 2 6.72 1.864 -30.179 1 23.01 ? C46 4NX 201 A 1 HETATM 28 C C45 4NX . . . C 2 5.63 2.516 -29.416 1 23.08 ? C45 4NX 201 A 1 HETATM 29 C C56 4NX . . . C 2 6.463 1.455 -31.476 1 22.9 ? C56 4NX 201 A 1 HETATM 30 C C57 4NX . . . C 2 5.195 1.668 -32.009 1 24.08 ? C57 4NX 201 A 1 HETATM 31 CL CL3 4NX . . . C 2 4.887 1.16 -33.687 1 23.49 ? CL3 4NX 201 A 1 HETATM 32 C C58 4NX . . . C 2 4.158 2.289 -31.297 1 24.41 ? C58 4NX 201 A 1 HETATM 33 C C59 4NX . . . C 2 4.375 2.702 -29.988 1 24.48 ? C59 4NX 201 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 33 #