data_4ZGL
#
_model_server_result.job_id            T91EJcyFxo4HIiv0obKR3Q 
_model_server_result.datetime_utc      '2024-12-21 14:04:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4zgl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":201}' 
#
_entry.id    4ZGL 
#
_exptl.entry_id    4ZGL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4ZGL 
_cell.length_a            48.9 
_cell.length_b            75.64 
_cell.length_c            335.09 
_cell.Z_PDB               40 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ZGL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
PISA dimeric 2 author_and_software_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,K 1 1 
C,D,L 2 1 
E,F,M 3 1 
G,H,N 4 1 
I,J,O 5 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     4ZGL 
_atom_sites.fract_transf_matrix[1][1]    0.02045 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013221 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002984 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 2 AMP B 1 201 201 AMP AMP . 
L 2 AMP C 1 201 201 AMP AMP . 
M 2 AMP F 1 201 201 AMP AMP . 
N 2 AMP H 1 201 201 AMP AMP . 
O 2 AMP I 1 201 201 AMP AMP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . M 2 -4.295 -1.86 -48.886 1 68.07 ? P AMP 201 F 1 
HETATM 2 O O1P AMP . . . M 2 -4.791 -2.374 -50.216 1 68.07 ? O1P AMP 201 F 1 
HETATM 3 O O2P AMP . . . M 2 -5.34 -1.989 -47.811 1 68.07 ? O2P AMP 201 F 1 
HETATM 4 O O3P AMP . . . M 2 -3.592 -0.524 -48.885 1 68.07 ? O3P AMP 201 F 1 
HETATM 5 O O5' AMP . . . M 2 -3.115 -2.903 -48.513 1 68.07 ? O5' AMP 201 F 1 
HETATM 6 C C5' AMP . . . M 2 -3.384 -4.294 -48.317 1 68.07 ? C5' AMP 201 F 1 
HETATM 7 C C4' AMP . . . M 2 -2.625 -4.801 -47.1 1 68.07 ? C4' AMP 201 F 1 
HETATM 8 O O4' AMP . . . M 2 -3.067 -6.109 -46.736 1 68.07 ? O4' AMP 201 F 1 
HETATM 9 C C3' AMP . . . M 2 -1.134 -4.938 -47.369 1 68.07 ? C3' AMP 201 F 1 
HETATM 10 O O3' AMP . . . M 2 -0.426 -3.705 -47.194 1 68.07 ? O3' AMP 201 F 1 
HETATM 11 C C2' AMP . . . M 2 -0.697 -6.025 -46.407 1 68.07 ? C2' AMP 201 F 1 
HETATM 12 O O2' AMP . . . M 2 -0.245 -5.488 -45.161 1 68.07 ? O2' AMP 201 F 1 
HETATM 13 C C1' AMP . . . M 2 -1.959 -6.86 -46.224 1 68.07 ? C1' AMP 201 F 1 
HETATM 14 N N9 AMP . . . M 2 -1.799 -8.176 -46.888 1 68.07 ? N9 AMP 201 F 1 
HETATM 15 C C8 AMP . . . M 2 -1.339 -8.417 -48.133 1 68.07 ? C8 AMP 201 F 1 
HETATM 16 N N7 AMP . . . M 2 -1.32 -9.752 -48.383 1 68.07 ? N7 AMP 201 F 1 
HETATM 17 C C5 AMP . . . M 2 -1.768 -10.382 -47.286 1 68.07 ? C5 AMP 201 F 1 
HETATM 18 C C6 AMP . . . M 2 -2.005 -11.781 -46.869 1 68.07 ? C6 AMP 201 F 1 
HETATM 19 N N6 AMP . . . M 2 -1.746 -12.808 -47.703 1 68.07 ? N6 AMP 201 F 1 
HETATM 20 N N1 AMP . . . M 2 -2.489 -12.003 -45.624 1 68.07 ? N1 AMP 201 F 1 
HETATM 21 C C2 AMP . . . M 2 -2.753 -10.994 -44.77 1 68.07 ? C2 AMP 201 F 1 
HETATM 22 N N3 AMP . . . M 2 -2.56 -9.698 -45.084 1 68.07 ? N3 AMP 201 F 1 
HETATM 23 C C4 AMP . . . M 2 -2.08 -9.337 -46.301 1 68.07 ? C4 AMP 201 F 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           355 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           23 
#