data_4ZGN # _model_server_result.job_id 358QzqAmuFyQFTPe-U-XWA _model_server_result.datetime_utc '2024-10-10 05:18:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zgn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 4ZGN # _exptl.entry_id 4ZGN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZGN _cell.length_a 74.26 _cell.length_b 116.64 _cell.length_c 132.58 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZGN _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 223 A CYS 204 1_555 B SG CYS 83 B CYS 492 4_577 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc1 A OD2 ASP 258 A ASP 239 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc2 A OD1 ASN 260 A ASN 241 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc3 C O3G ATP . A ATP 401 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc4 C O1B ATP . A ATP 401 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc5 D MG MG . A MG 402 1_555 E O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc6 D MG MG . A MG 402 1_555 E O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4ZGN _atom_sites.fract_transf_matrix[1][1] 0.013466 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008573 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007543 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ATP A 1 401 611 ATP ATP . D 4 MG A 1 402 612 MG MG . E 5 HOH A 1 501 3 HOH HOH . E 5 HOH A 2 502 1 HOH HOH . E 5 HOH A 3 503 6 HOH HOH . E 5 HOH A 4 504 8 HOH HOH . E 5 HOH A 5 505 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 3 23.607 133.41 141.839 1 94.43 ? PG ATP 401 A 1 HETATM 2 O O1G ATP . . . C 3 24.324 132.316 141.011 1 94.89 ? O1G ATP 401 A 1 HETATM 3 O O2G ATP . . . C 3 23.734 133.056 143.332 1 99.79 ? O2G ATP 401 A 1 HETATM 4 O O3G ATP . . . C 3 24.129 134.808 141.546 1 96.47 ? O3G ATP 401 A 1 HETATM 5 P PB ATP . . . C 3 20.777 133.492 142.47 1 80.69 ? PB ATP 401 A 1 HETATM 6 O O1B ATP . . . C 3 20.499 135 142.475 1 85.38 ? O1B ATP 401 A 1 HETATM 7 O O2B ATP . . . C 3 21.025 133.028 143.859 1 79.45 ? O2B ATP 401 A 1 HETATM 8 O O3B ATP . . . C 3 22.051 133.257 141.543 1 85.68 ? O3B ATP 401 A 1 HETATM 9 P PA ATP . . . C 3 18.737 132.635 140.464 1 75.78 ? PA ATP 401 A 1 HETATM 10 O O1A ATP . . . C 3 19.602 132.975 139.235 1 75.51 ? O1A ATP 401 A 1 HETATM 11 O O2A ATP . . . C 3 17.505 133.463 140.451 1 75.56 ? O2A ATP 401 A 1 HETATM 12 O O3A ATP . . . C 3 19.501 132.764 141.859 1 76.05 ? O3A ATP 401 A 1 HETATM 13 O O5' ATP . . . C 3 18.506 131.059 140.487 1 75.93 ? O5' ATP 401 A 1 HETATM 14 C C5' ATP . . . C 3 19.518 130.065 140.75 1 74.56 ? C5' ATP 401 A 1 HETATM 15 C C4' ATP . . . C 3 19.041 128.797 140.09 1 76.07 ? C4' ATP 401 A 1 HETATM 16 O O4' ATP . . . C 3 17.7 128.502 140.535 1 75.27 ? O4' ATP 401 A 1 HETATM 17 C C3' ATP . . . C 3 18.941 128.847 138.569 1 78.38 ? C3' ATP 401 A 1 HETATM 18 O O3' ATP . . . C 3 20.196 128.57 137.955 1 81.08 ? O3' ATP 401 A 1 HETATM 19 C C2' ATP . . . C 3 17.893 127.772 138.285 1 78.51 ? C2' ATP 401 A 1 HETATM 20 O O2' ATP . . . C 3 18.461 126.462 138.282 1 78.81 ? O2' ATP 401 A 1 HETATM 21 C C1' ATP . . . C 3 16.945 127.94 139.479 1 76.67 ? C1' ATP 401 A 1 HETATM 22 N N9 ATP . . . C 3 15.768 128.776 139.243 1 79.8 ? N9 ATP 401 A 1 HETATM 23 C C8 ATP . . . C 3 15.67 130.138 139.378 1 82.47 ? C8 ATP 401 A 1 HETATM 24 N N7 ATP . . . C 3 14.456 130.609 139.208 1 83.62 ? N7 ATP 401 A 1 HETATM 25 C C5 ATP . . . C 3 13.701 129.478 138.936 1 83.66 ? C5 ATP 401 A 1 HETATM 26 C C6 ATP . . . C 3 12.325 129.293 138.686 1 83.7 ? C6 ATP 401 A 1 HETATM 27 N N6 ATP . . . C 3 11.425 130.277 138.731 1 84.92 ? N6 ATP 401 A 1 HETATM 28 N N1 ATP . . . C 3 11.896 128.032 138.438 1 84.08 ? N1 ATP 401 A 1 HETATM 29 C C2 ATP . . . C 3 12.786 127.032 138.465 1 83.29 ? C2 ATP 401 A 1 HETATM 30 N N3 ATP . . . C 3 14.101 127.08 138.71 1 81.76 ? N3 ATP 401 A 1 HETATM 31 C C4 ATP . . . C 3 14.5 128.341 138.94 1 82.36 ? C4 ATP 401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #