data_4ZGV # _model_server_result.job_id FuTHsLEJ1SvUlZySzKz5pQ _model_server_result.datetime_utc '2025-04-17 20:24:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zgv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 4ZGV # _exptl.entry_id 4ZGV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.71 _cell.angle_gamma 90 _cell.entry_id 4ZGV _cell.length_a 137.274 _cell.length_b 79.886 _cell.length_c 137.905 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZGV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,I 1 1 B,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 478 A CYS 477 1_555 A SG CYS 485 A CYS 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 778 A CYS 777 1_555 A SG CYS 785 A CYS 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf3 B SG CYS 478 B CYS 477 1_555 B SG CYS 485 B CYS 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf4 B SG CYS 778 B CYS 777 1_555 B SG CYS 785 B CYS 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 221 n n N1 CM1 LDA sing 222 n n N1 CM2 LDA sing 223 n n N1 C1 LDA sing 224 n n CM1 HM11 LDA sing 225 n n CM1 HM12 LDA sing 226 n n CM1 HM13 LDA sing 227 n n CM2 HM21 LDA sing 228 n n CM2 HM22 LDA sing 229 n n CM2 HM23 LDA sing 230 n n C1 C2 LDA sing 231 n n C1 H11 LDA sing 232 n n C1 H12 LDA sing 233 n n C2 C3 LDA sing 234 n n C2 H21 LDA sing 235 n n C2 H22 LDA sing 236 n n C3 C4 LDA sing 237 n n C3 H31 LDA sing 238 n n C3 H32 LDA sing 239 n n C4 C5 LDA sing 240 n n C4 H41 LDA sing 241 n n C4 H42 LDA sing 242 n n C5 C6 LDA sing 243 n n C5 H51 LDA sing 244 n n C5 H52 LDA sing 245 n n C6 C7 LDA sing 246 n n C6 H61 LDA sing 247 n n C6 H62 LDA sing 248 n n C7 C8 LDA sing 249 n n C7 H71 LDA sing 250 n n C7 H72 LDA sing 251 n n C8 C9 LDA sing 252 n n C8 H81 LDA sing 253 n n C8 H82 LDA sing 254 n n C9 C10 LDA sing 255 n n C9 H91 LDA sing 256 n n C9 H92 LDA sing 257 n n C10 C11 LDA sing 258 n n C10 H101 LDA sing 259 n n C10 H102 LDA sing 260 n n C11 C12 LDA sing 261 n n C11 H111 LDA sing 262 n n C11 H112 LDA sing 263 n n C12 H121 LDA sing 264 n n C12 H122 LDA sing 265 n n C12 H123 LDA sing 266 n n # _atom_sites.entry_id 4ZGV _atom_sites.fract_transf_matrix[1][1] 0.007285 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000091 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012518 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007252 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LDA A 1 901 1 LDA LDA . D 2 LDA A 1 902 2 LDA LDA . E 3 BOG A 1 903 1 BOG BOG . F 3 BOG A 1 904 2 BOG BOG . G 3 BOG A 1 905 4 BOG BOG . H 3 BOG B 1 901 3 BOG BOG . I 4 HOH A 1 1001 4 HOH HOH . J 4 HOH B 1 1001 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . A . C 2 30.34 -1.101 41.739 0.5 103.68 ? N1 LDA 901 A 1 HETATM 2 N N1 LDA . B . C 2 28.419 -3.279 45.523 0.5 89.59 ? N1 LDA 901 A 1 HETATM 3 O O1 LDA . A . C 2 30.891 -0.382 40.882 0.5 105.73 ? O1 LDA 901 A 1 HETATM 4 O O1 LDA . B . C 2 28.332 -2.088 45.872 0.5 90.69 ? O1 LDA 901 A 1 HETATM 5 C CM1 LDA . A . C 2 30.548 -0.515 43.073 0.5 98.99 ? CM1 LDA 901 A 1 HETATM 6 C CM1 LDA . B . C 2 27.458 -4.1 46.273 0.5 88.24 ? CM1 LDA 901 A 1 HETATM 7 C CM2 LDA . A . C 2 30.897 -2.463 41.69 0.5 103.1 ? CM2 LDA 901 A 1 HETATM 8 C CM2 LDA . B . C 2 29.792 -3.714 45.801 0.5 87.32 ? CM2 LDA 901 A 1 HETATM 9 C C1 LDA . A . C 2 28.908 -1.138 41.424 0.5 103.87 ? C1 LDA 901 A 1 HETATM 10 C C1 LDA . B . C 2 28.134 -3.394 44.085 0.5 91.17 ? C1 LDA 901 A 1 HETATM 11 C C2 LDA . A . C 2 28.47 -2.528 40.978 0.5 100.43 ? C2 LDA 901 A 1 HETATM 12 C C2 LDA . B . C 2 26.742 -2.863 43.74 0.5 91.69 ? C2 LDA 901 A 1 HETATM 13 C C3 LDA . A . C 2 27.01 -2.484 40.538 0.5 98.53 ? C3 LDA 901 A 1 HETATM 14 C C3 LDA . B . C 2 26.528 -2.87 42.223 0.5 92.42 ? C3 LDA 901 A 1 HETATM 15 C C4 LDA . A . C 2 26.112 -1.985 41.671 0.5 97 ? C4 LDA 901 A 1 HETATM 16 C C4 LDA . B . C 2 26.107 -1.511 41.656 0.5 90.9 ? C4 LDA 901 A 1 HETATM 17 C C5 LDA . A . C 2 24.773 -1.453 41.162 0.5 94.57 ? C5 LDA 901 A 1 HETATM 18 C C5 LDA . B . C 2 24.631 -1.204 41.908 0.5 89.12 ? C5 LDA 901 A 1 HETATM 19 C C6 LDA . A . C 2 24.646 0.057 41.355 0.5 90.95 ? C6 LDA 901 A 1 HETATM 20 C C6 LDA . B . C 2 23.988 -0.454 40.739 0.5 87.21 ? C6 LDA 901 A 1 HETATM 21 C C7 LDA . A . C 2 23.193 0.488 41.55 0.5 86.88 ? C7 LDA 901 A 1 HETATM 22 C C7 LDA . B . C 2 23.655 1.002 41.067 0.5 82.3 ? C7 LDA 901 A 1 HETATM 23 C C8 LDA . A . C 2 22.781 1.504 40.493 0.5 81.58 ? C8 LDA 901 A 1 HETATM 24 C C8 LDA . B . C 2 22.223 1.17 41.563 0.5 77.95 ? C8 LDA 901 A 1 HETATM 25 C C9 LDA . A . C 2 21.43 2.133 40.795 0.5 77.08 ? C9 LDA 901 A 1 HETATM 26 C C9 LDA . B . C 2 21.335 1.863 40.54 0.5 74.1 ? C9 LDA 901 A 1 HETATM 27 C C10 LDA . A . C 2 21.459 3.595 40.38 0.5 74.77 ? C10 LDA 901 A 1 HETATM 28 C C10 LDA . B . C 2 21.565 3.366 40.571 0.5 71.81 ? C10 LDA 901 A 1 HETATM 29 C C11 LDA . A . C 2 20.167 4.315 40.718 0.5 72 ? C11 LDA 901 A 1 HETATM 30 C C11 LDA . B . C 2 20.268 4.148 40.712 0.5 69.47 ? C11 LDA 901 A 1 HETATM 31 C C12 LDA . A . C 2 20.451 5.415 41.709 0.5 70.45 ? C12 LDA 901 A 1 HETATM 32 C C12 LDA . B . C 2 20.47 5.345 41.61 0.5 68.01 ? C12 LDA 901 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 459 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #