data_4ZGV # _model_server_result.job_id BoWX37UC4Y6ZfShoQ2wsRg _model_server_result.datetime_utc '2025-04-17 22:04:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zgv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":902}' # _entry.id 4ZGV # _exptl.entry_id 4ZGV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.71 _cell.angle_gamma 90 _cell.entry_id 4ZGV _cell.length_a 137.274 _cell.length_b 79.886 _cell.length_c 137.905 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZGV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,I 1 1 B,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 478 A CYS 477 1_555 A SG CYS 485 A CYS 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 778 A CYS 777 1_555 A SG CYS 785 A CYS 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf3 B SG CYS 478 B CYS 477 1_555 B SG CYS 485 B CYS 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf4 B SG CYS 778 B CYS 777 1_555 B SG CYS 785 B CYS 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 221 n n N1 CM1 LDA sing 222 n n N1 CM2 LDA sing 223 n n N1 C1 LDA sing 224 n n CM1 HM11 LDA sing 225 n n CM1 HM12 LDA sing 226 n n CM1 HM13 LDA sing 227 n n CM2 HM21 LDA sing 228 n n CM2 HM22 LDA sing 229 n n CM2 HM23 LDA sing 230 n n C1 C2 LDA sing 231 n n C1 H11 LDA sing 232 n n C1 H12 LDA sing 233 n n C2 C3 LDA sing 234 n n C2 H21 LDA sing 235 n n C2 H22 LDA sing 236 n n C3 C4 LDA sing 237 n n C3 H31 LDA sing 238 n n C3 H32 LDA sing 239 n n C4 C5 LDA sing 240 n n C4 H41 LDA sing 241 n n C4 H42 LDA sing 242 n n C5 C6 LDA sing 243 n n C5 H51 LDA sing 244 n n C5 H52 LDA sing 245 n n C6 C7 LDA sing 246 n n C6 H61 LDA sing 247 n n C6 H62 LDA sing 248 n n C7 C8 LDA sing 249 n n C7 H71 LDA sing 250 n n C7 H72 LDA sing 251 n n C8 C9 LDA sing 252 n n C8 H81 LDA sing 253 n n C8 H82 LDA sing 254 n n C9 C10 LDA sing 255 n n C9 H91 LDA sing 256 n n C9 H92 LDA sing 257 n n C10 C11 LDA sing 258 n n C10 H101 LDA sing 259 n n C10 H102 LDA sing 260 n n C11 C12 LDA sing 261 n n C11 H111 LDA sing 262 n n C11 H112 LDA sing 263 n n C12 H121 LDA sing 264 n n C12 H122 LDA sing 265 n n C12 H123 LDA sing 266 n n # _atom_sites.entry_id 4ZGV _atom_sites.fract_transf_matrix[1][1] 0.007285 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000091 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012518 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007252 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LDA A 1 901 1 LDA LDA . D 2 LDA A 1 902 2 LDA LDA . E 3 BOG A 1 903 1 BOG BOG . F 3 BOG A 1 904 2 BOG BOG . G 3 BOG A 1 905 4 BOG BOG . H 3 BOG B 1 901 3 BOG BOG . I 4 HOH A 1 1001 4 HOH HOH . J 4 HOH B 1 1001 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . D 2 34.666 -3.165 36.364 1 152.34 ? N1 LDA 902 A 1 HETATM 2 O O1 LDA . . . D 2 34.25 -2.081 35.922 1 159.39 ? O1 LDA 902 A 1 HETATM 3 C CM1 LDA . . . D 2 36.134 -3.081 36.483 1 144.06 ? CM1 LDA 902 A 1 HETATM 4 C CM2 LDA . . . D 2 34.339 -4.238 35.401 1 142.67 ? CM2 LDA 902 A 1 HETATM 5 C C1 LDA . . . D 2 34.099 -3.353 37.727 1 155.45 ? C1 LDA 902 A 1 HETATM 6 C C2 LDA . . . D 2 32.574 -3.53 37.846 1 148.15 ? C2 LDA 902 A 1 HETATM 7 C C3 LDA . . . D 2 31.798 -2.218 37.988 1 136.86 ? C3 LDA 902 A 1 HETATM 8 C C4 LDA . . . D 2 30.602 -2.168 37.039 1 127.34 ? C4 LDA 902 A 1 HETATM 9 C C5 LDA . . . D 2 31.07 -1.954 35.597 1 118.82 ? C5 LDA 902 A 1 HETATM 10 C C6 LDA . . . D 2 29.933 -1.752 34.6 1 104.82 ? C6 LDA 902 A 1 HETATM 11 C C7 LDA . . . D 2 29.329 -0.359 34.668 1 95.69 ? C7 LDA 902 A 1 HETATM 12 C C8 LDA . . . D 2 28.122 -0.279 33.749 1 92.76 ? C8 LDA 902 A 1 HETATM 13 C C9 LDA . . . D 2 27.363 1.027 33.944 1 93.03 ? C9 LDA 902 A 1 HETATM 14 C C10 LDA . . . D 2 25.981 1.006 33.287 1 95.95 ? C10 LDA 902 A 1 HETATM 15 C C11 LDA . . . D 2 25.914 1.92 32.059 1 97.56 ? C11 LDA 902 A 1 HETATM 16 C C12 LDA . . . D 2 24.7 1.664 31.184 1 95.37 ? C12 LDA 902 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #