data_4ZHD # _model_server_result.job_id cnA1r0BPETDbm6NKKJ4OCg _model_server_result.datetime_utc '2024-11-25 15:25:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zhd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":203}' # _entry.id 4ZHD # _exptl.entry_id 4ZHD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZHD _cell.length_a 114.589 _cell.length_b 114.589 _cell.length_c 118.781 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZHD _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,N 1 1 B,G,H,O 2 1 C,I,J,K,L,M,P 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 78 A CYS 76 1_555 A SG CYS 177 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf2 B SG CYS 78 B CYS 76 1_555 B SG CYS 177 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 C SG CYS 78 C CYS 76 1_555 C SG CYS 177 C CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 162 n n C1 C2 GOL sing 163 n n C1 H11 GOL sing 164 n n C1 H12 GOL sing 165 n n O1 HO1 GOL sing 166 n n C2 O2 GOL sing 167 n n C2 C3 GOL sing 168 n n C2 H2 GOL sing 169 n n O2 HO2 GOL sing 170 n n C3 O3 GOL sing 171 n n C3 H31 GOL sing 172 n n C3 H32 GOL sing 173 n n O3 HO3 GOL sing 174 n n # _atom_sites.entry_id 4ZHD _atom_sites.fract_transf_matrix[1][1] 0.008727 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008727 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008419 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 4PU A 1 201 200 4PU PU . E 3 4OZ A 1 202 300 4OZ ENT . F 4 GOL A 1 203 1 GOL GOL . G 2 4PU B 1 201 200 4PU PU . H 3 4OZ B 1 202 300 4OZ ENT . I 2 4PU C 1 201 200 4PU PU . J 3 4OZ C 1 202 300 4OZ ENT . K 4 GOL C 1 203 1 GOL GOL . L 5 SO4 C 1 204 1 SO4 SO4 . M 5 SO4 C 1 205 2 SO4 SO4 . N 6 HOH A 1 301 84 HOH HOH . N 6 HOH A 2 302 53 HOH HOH . N 6 HOH A 3 303 67 HOH HOH . N 6 HOH A 4 304 28 HOH HOH . N 6 HOH A 5 305 43 HOH HOH . N 6 HOH A 6 306 58 HOH HOH . N 6 HOH A 7 307 27 HOH HOH . N 6 HOH A 8 308 20 HOH HOH . N 6 HOH A 9 309 68 HOH HOH . N 6 HOH A 10 310 64 HOH HOH . N 6 HOH A 11 311 61 HOH HOH . N 6 HOH A 12 312 8 HOH HOH . N 6 HOH A 13 313 66 HOH HOH . N 6 HOH A 14 314 32 HOH HOH . N 6 HOH A 15 315 60 HOH HOH . N 6 HOH A 16 316 21 HOH HOH . N 6 HOH A 17 317 24 HOH HOH . N 6 HOH A 18 318 35 HOH HOH . N 6 HOH A 19 319 13 HOH HOH . N 6 HOH A 20 320 7 HOH HOH . N 6 HOH A 21 321 76 HOH HOH . N 6 HOH A 22 322 72 HOH HOH . N 6 HOH A 23 323 39 HOH HOH . N 6 HOH A 24 324 40 HOH HOH . N 6 HOH A 25 325 75 HOH HOH . N 6 HOH A 26 326 6 HOH HOH . N 6 HOH A 27 327 62 HOH HOH . N 6 HOH A 28 328 55 HOH HOH . N 6 HOH A 29 329 33 HOH HOH . N 6 HOH A 30 330 122 HOH HOH . N 6 HOH A 31 331 42 HOH HOH . N 6 HOH A 32 332 89 HOH HOH . O 6 HOH B 1 301 74 HOH HOH . O 6 HOH B 2 302 49 HOH HOH . O 6 HOH B 3 303 77 HOH HOH . O 6 HOH B 4 304 36 HOH HOH . O 6 HOH B 5 305 16 HOH HOH . O 6 HOH B 6 306 47 HOH HOH . O 6 HOH B 7 307 4 HOH HOH . O 6 HOH B 8 308 115 HOH HOH . P 6 HOH C 1 301 70 HOH HOH . P 6 HOH C 2 302 93 HOH HOH . P 6 HOH C 3 303 11 HOH HOH . P 6 HOH C 4 304 23 HOH HOH . P 6 HOH C 5 305 63 HOH HOH . P 6 HOH C 6 306 57 HOH HOH . P 6 HOH C 7 307 96 HOH HOH . P 6 HOH C 8 308 10 HOH HOH . P 6 HOH C 9 309 103 HOH HOH . P 6 HOH C 10 310 34 HOH HOH . P 6 HOH C 11 311 1 HOH HOH . P 6 HOH C 12 312 38 HOH HOH . P 6 HOH C 13 313 2 HOH HOH . P 6 HOH C 14 314 3 HOH HOH . P 6 HOH C 15 315 79 HOH HOH . P 6 HOH C 16 316 14 HOH HOH . P 6 HOH C 17 317 9 HOH HOH . P 6 HOH C 18 318 29 HOH HOH . P 6 HOH C 19 319 45 HOH HOH . P 6 HOH C 20 320 15 HOH HOH . P 6 HOH C 21 321 17 HOH HOH . P 6 HOH C 22 322 71 HOH HOH . P 6 HOH C 23 323 41 HOH HOH . P 6 HOH C 24 324 30 HOH HOH . P 6 HOH C 25 325 50 HOH HOH . P 6 HOH C 26 326 22 HOH HOH . P 6 HOH C 27 327 26 HOH HOH . P 6 HOH C 28 328 51 HOH HOH . P 6 HOH C 29 329 123 HOH HOH . P 6 HOH C 30 330 4 HOH HOH . P 6 HOH C 31 331 56 HOH HOH . P 6 HOH C 32 332 6 HOH HOH . P 6 HOH C 33 333 59 HOH HOH . P 6 HOH C 34 334 91 HOH HOH . P 6 HOH C 35 335 73 HOH HOH . P 6 HOH C 36 336 18 HOH HOH . P 6 HOH C 37 337 114 HOH HOH . P 6 HOH C 38 338 19 HOH HOH . P 6 HOH C 39 339 54 HOH HOH . P 6 HOH C 40 340 46 HOH HOH . P 6 HOH C 41 341 65 HOH HOH . P 6 HOH C 42 342 5 HOH HOH . P 6 HOH C 43 343 94 HOH HOH . P 6 HOH C 44 344 44 HOH HOH . P 6 HOH C 45 345 31 HOH HOH . P 6 HOH C 46 346 90 HOH HOH . P 6 HOH C 47 347 112 HOH HOH . P 6 HOH C 48 348 52 HOH HOH . P 6 HOH C 49 349 87 HOH HOH . P 6 HOH C 50 350 37 HOH HOH . P 6 HOH C 51 351 113 HOH HOH . P 6 HOH C 52 352 78 HOH HOH . P 6 HOH C 53 353 48 HOH HOH . P 6 HOH C 54 354 69 HOH HOH . P 6 HOH C 55 355 95 HOH HOH . P 6 HOH C 56 356 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 4 41.768 65.615 40.402 1 53.65 ? C1 GOL 203 C 1 HETATM 2 O O1 GOL . . . K 4 40.491 65.164 40.897 1 42.82 ? O1 GOL 203 C 1 HETATM 3 C C2 GOL . . . K 4 42.66 64.41 40.083 1 59.87 ? C2 GOL 203 C 1 HETATM 4 O O2 GOL . . . K 4 43.01 64.37 38.69 1 61.26 ? O2 GOL 203 C 1 HETATM 5 C C3 GOL . . . K 4 43.948 64.424 40.886 1 59.41 ? C3 GOL 203 C 1 HETATM 6 O O3 GOL . . . K 4 43.757 63.779 42.148 1 62.96 ? O3 GOL 203 C 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #