data_4ZI0 # _model_server_result.job_id 8yJ4NKNXlO2me0RmGRYA1Q _model_server_result.datetime_utc '2024-11-26 20:29:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zi0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 4ZI0 # _exptl.entry_id 4ZI0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZI0 _cell.length_a 66.758 _cell.length_b 66.758 _cell.length_c 126.744 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZI0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 46 A HIS 41 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc2 A OE1 GLU 65 A GLU 80 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc3 A OD2 ASP 93 A ASP 108 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc4 A OD1 ASP 93 A ASP 108 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc5 A OE2 GLU 104 A GLU 119 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc6 A O ILE 105 A ILE 120 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc7 C MN MN . A MN 302 1_555 F O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc8 C MN MN . A MN 302 1_555 F O HOH . A HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc9 D MN MN . A MN 303 1_555 F O HOH . A HOH 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc10 D MN MN . A MN 303 1_555 F O HOH . A HOH 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc11 D MN MN . A MN 303 1_555 F O HOH . A HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc12 D MN MN . A MN 303 1_555 F O HOH . A HOH 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4ZI0 _atom_sites.fract_transf_matrix[1][1] 0.014979 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014979 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00789 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 301 1 SO4 SO4 . C 3 MN A 1 302 1 MN MN . D 3 MN A 1 303 2 MN MN . E 4 4P9 A 1 304 1 4P9 DRG . F 5 HOH A 1 401 199 HOH HOH . F 5 HOH A 2 402 166 HOH HOH . F 5 HOH A 3 403 183 HOH HOH . F 5 HOH A 4 404 165 HOH HOH . F 5 HOH A 5 405 162 HOH HOH . F 5 HOH A 6 406 161 HOH HOH . F 5 HOH A 7 407 143 HOH HOH . F 5 HOH A 8 408 5 HOH HOH . F 5 HOH A 9 409 62 HOH HOH . F 5 HOH A 10 410 26 HOH HOH . F 5 HOH A 11 411 51 HOH HOH . F 5 HOH A 12 412 115 HOH HOH . F 5 HOH A 13 413 138 HOH HOH . F 5 HOH A 14 414 64 HOH HOH . F 5 HOH A 15 415 197 HOH HOH . F 5 HOH A 16 416 142 HOH HOH . F 5 HOH A 17 417 154 HOH HOH . F 5 HOH A 18 418 184 HOH HOH . F 5 HOH A 19 419 191 HOH HOH . F 5 HOH A 20 420 77 HOH HOH . F 5 HOH A 21 421 43 HOH HOH . F 5 HOH A 22 422 127 HOH HOH . F 5 HOH A 23 423 106 HOH HOH . F 5 HOH A 24 424 19 HOH HOH . F 5 HOH A 25 425 102 HOH HOH . F 5 HOH A 26 426 70 HOH HOH . F 5 HOH A 27 427 93 HOH HOH . F 5 HOH A 28 428 148 HOH HOH . F 5 HOH A 29 429 33 HOH HOH . F 5 HOH A 30 430 163 HOH HOH . F 5 HOH A 31 431 38 HOH HOH . F 5 HOH A 32 432 12 HOH HOH . F 5 HOH A 33 433 167 HOH HOH . F 5 HOH A 34 434 28 HOH HOH . F 5 HOH A 35 435 113 HOH HOH . F 5 HOH A 36 436 67 HOH HOH . F 5 HOH A 37 437 58 HOH HOH . F 5 HOH A 38 438 52 HOH HOH . F 5 HOH A 39 439 202 HOH HOH . F 5 HOH A 40 440 23 HOH HOH . F 5 HOH A 41 441 45 HOH HOH . F 5 HOH A 42 442 139 HOH HOH . F 5 HOH A 43 443 10 HOH HOH . F 5 HOH A 44 444 203 HOH HOH . F 5 HOH A 45 445 110 HOH HOH . F 5 HOH A 46 446 66 HOH HOH . F 5 HOH A 47 447 60 HOH HOH . F 5 HOH A 48 448 100 HOH HOH . F 5 HOH A 49 449 46 HOH HOH . F 5 HOH A 50 450 125 HOH HOH . F 5 HOH A 51 451 171 HOH HOH . F 5 HOH A 52 452 20 HOH HOH . F 5 HOH A 53 453 186 HOH HOH . F 5 HOH A 54 454 3 HOH HOH . F 5 HOH A 55 455 83 HOH HOH . F 5 HOH A 56 456 68 HOH HOH . F 5 HOH A 57 457 1 HOH HOH . F 5 HOH A 58 458 76 HOH HOH . F 5 HOH A 59 459 2 HOH HOH . F 5 HOH A 60 460 32 HOH HOH . F 5 HOH A 61 461 112 HOH HOH . F 5 HOH A 62 462 140 HOH HOH . F 5 HOH A 63 463 74 HOH HOH . F 5 HOH A 64 464 21 HOH HOH . F 5 HOH A 65 465 34 HOH HOH . F 5 HOH A 66 466 175 HOH HOH . F 5 HOH A 67 467 81 HOH HOH . F 5 HOH A 68 468 114 HOH HOH . F 5 HOH A 69 469 17 HOH HOH . F 5 HOH A 70 470 169 HOH HOH . F 5 HOH A 71 471 117 HOH HOH . F 5 HOH A 72 472 44 HOH HOH . F 5 HOH A 73 473 9 HOH HOH . F 5 HOH A 74 474 16 HOH HOH . F 5 HOH A 75 475 132 HOH HOH . F 5 HOH A 76 476 87 HOH HOH . F 5 HOH A 77 477 137 HOH HOH . F 5 HOH A 78 478 8 HOH HOH . F 5 HOH A 79 479 49 HOH HOH . F 5 HOH A 80 480 36 HOH HOH . F 5 HOH A 81 481 54 HOH HOH . F 5 HOH A 82 482 90 HOH HOH . F 5 HOH A 83 483 61 HOH HOH . F 5 HOH A 84 484 18 HOH HOH . F 5 HOH A 85 485 53 HOH HOH . F 5 HOH A 86 486 201 HOH HOH . F 5 HOH A 87 487 35 HOH HOH . F 5 HOH A 88 488 4 HOH HOH . F 5 HOH A 89 489 129 HOH HOH . F 5 HOH A 90 490 121 HOH HOH . F 5 HOH A 91 491 41 HOH HOH . F 5 HOH A 92 492 98 HOH HOH . F 5 HOH A 93 493 40 HOH HOH . F 5 HOH A 94 494 24 HOH HOH . F 5 HOH A 95 495 56 HOH HOH . F 5 HOH A 96 496 156 HOH HOH . F 5 HOH A 97 497 182 HOH HOH . F 5 HOH A 98 498 13 HOH HOH . F 5 HOH A 99 499 72 HOH HOH . F 5 HOH A 100 500 196 HOH HOH . F 5 HOH A 101 501 22 HOH HOH . F 5 HOH A 102 502 103 HOH HOH . F 5 HOH A 103 503 55 HOH HOH . F 5 HOH A 104 504 59 HOH HOH . F 5 HOH A 105 505 6 HOH HOH . F 5 HOH A 106 506 14 HOH HOH . F 5 HOH A 107 507 42 HOH HOH . F 5 HOH A 108 508 88 HOH HOH . F 5 HOH A 109 509 29 HOH HOH . F 5 HOH A 110 510 144 HOH HOH . F 5 HOH A 111 511 25 HOH HOH . F 5 HOH A 112 512 7 HOH HOH . F 5 HOH A 113 513 145 HOH HOH . F 5 HOH A 114 514 91 HOH HOH . F 5 HOH A 115 515 84 HOH HOH . F 5 HOH A 116 516 119 HOH HOH . F 5 HOH A 117 517 111 HOH HOH . F 5 HOH A 118 518 192 HOH HOH . F 5 HOH A 119 519 11 HOH HOH . F 5 HOH A 120 520 128 HOH HOH . F 5 HOH A 121 521 180 HOH HOH . F 5 HOH A 122 522 15 HOH HOH . F 5 HOH A 123 523 89 HOH HOH . F 5 HOH A 124 524 65 HOH HOH . F 5 HOH A 125 525 141 HOH HOH . F 5 HOH A 126 526 155 HOH HOH . F 5 HOH A 127 527 159 HOH HOH . F 5 HOH A 128 528 116 HOH HOH . F 5 HOH A 129 529 30 HOH HOH . F 5 HOH A 130 530 146 HOH HOH . F 5 HOH A 131 531 181 HOH HOH . F 5 HOH A 132 532 85 HOH HOH . F 5 HOH A 133 533 151 HOH HOH . F 5 HOH A 134 534 188 HOH HOH . F 5 HOH A 135 535 120 HOH HOH . F 5 HOH A 136 536 63 HOH HOH . F 5 HOH A 137 537 57 HOH HOH . F 5 HOH A 138 538 160 HOH HOH . F 5 HOH A 139 539 118 HOH HOH . F 5 HOH A 140 540 189 HOH HOH . F 5 HOH A 141 541 133 HOH HOH . F 5 HOH A 142 542 187 HOH HOH . F 5 HOH A 143 543 101 HOH HOH . F 5 HOH A 144 544 195 HOH HOH . F 5 HOH A 145 545 149 HOH HOH . F 5 HOH A 146 546 194 HOH HOH . F 5 HOH A 147 547 73 HOH HOH . F 5 HOH A 148 548 96 HOH HOH . F 5 HOH A 149 549 99 HOH HOH . F 5 HOH A 150 550 108 HOH HOH . F 5 HOH A 151 551 173 HOH HOH . F 5 HOH A 152 552 105 HOH HOH . F 5 HOH A 153 553 130 HOH HOH . F 5 HOH A 154 554 126 HOH HOH . F 5 HOH A 155 555 200 HOH HOH . F 5 HOH A 156 556 124 HOH HOH . F 5 HOH A 157 557 134 HOH HOH . F 5 HOH A 158 558 69 HOH HOH . F 5 HOH A 159 559 135 HOH HOH . F 5 HOH A 160 560 170 HOH HOH . F 5 HOH A 161 561 104 HOH HOH . F 5 HOH A 162 562 79 HOH HOH . F 5 HOH A 163 563 94 HOH HOH . F 5 HOH A 164 564 109 HOH HOH . F 5 HOH A 165 565 131 HOH HOH . F 5 HOH A 166 566 190 HOH HOH . F 5 HOH A 167 567 157 HOH HOH . F 5 HOH A 168 568 27 HOH HOH . F 5 HOH A 169 569 193 HOH HOH . F 5 HOH A 170 570 152 HOH HOH . F 5 HOH A 171 571 31 HOH HOH . F 5 HOH A 172 572 123 HOH HOH . F 5 HOH A 173 573 153 HOH HOH . F 5 HOH A 174 574 172 HOH HOH . F 5 HOH A 175 575 47 HOH HOH . F 5 HOH A 176 576 179 HOH HOH . F 5 HOH A 177 577 178 HOH HOH . F 5 HOH A 178 578 122 HOH HOH . F 5 HOH A 179 579 97 HOH HOH . F 5 HOH A 180 580 50 HOH HOH . F 5 HOH A 181 581 185 HOH HOH . F 5 HOH A 182 582 136 HOH HOH . F 5 HOH A 183 583 164 HOH HOH . F 5 HOH A 184 584 168 HOH HOH . F 5 HOH A 185 585 86 HOH HOH . F 5 HOH A 186 586 37 HOH HOH . F 5 HOH A 187 587 174 HOH HOH . F 5 HOH A 188 588 177 HOH HOH . F 5 HOH A 189 589 176 HOH HOH . F 5 HOH A 190 590 75 HOH HOH . F 5 HOH A 191 591 198 HOH HOH . F 5 HOH A 192 592 158 HOH HOH . F 5 HOH A 193 593 39 HOH HOH . F 5 HOH A 194 594 80 HOH HOH . F 5 HOH A 195 595 78 HOH HOH . F 5 HOH A 196 596 71 HOH HOH . F 5 HOH A 197 597 107 HOH HOH . F 5 HOH A 198 598 48 HOH HOH . F 5 HOH A 199 599 95 HOH HOH . F 5 HOH A 200 600 82 HOH HOH . F 5 HOH A 201 601 150 HOH HOH . F 5 HOH A 202 602 92 HOH HOH . F 5 HOH A 203 603 147 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -31.31 _atom_site.Cartn_y -0.921 _atom_site.Cartn_z -13.438 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.89 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #