data_4ZIA # _model_server_result.job_id '_CT0cYkbyUr2sY-4OLdz0g' _model_server_result.datetime_utc '2024-10-19 16:45:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zia # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 4ZIA # _exptl.entry_id 4ZIA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZIA _cell.length_a 109.012 _cell.length_b 109.012 _cell.length_c 154.3 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZIA _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,I,J 1 1 C,D,G,K,L 2 1 E,H 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_646 y+1,x-1,-z+7/4 0 1 0 1 0 0 0 0 -1 109.012 -109.012 270.025 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B NE2 HIS 60 B HIS 58 1_555 F NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc2 B NE2 HIS 60 B HIS 58 1_555 F NI NI . B NI 201 6_566 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc3 F NI NI . B NI 201 1_555 C NE2 HIS 60 C HIS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc4 F NI NI . B NI 201 6_566 C NE2 HIS 60 C HIS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4ZIA _atom_sites.fract_transf_matrix[1][1] 0.009173 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009173 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006481 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 NI B 1 201 1 NI NI . G 3 FMT D 1 201 1 FMT FMT . H 4 MG E 1 201 1 MG MG . I 5 HOH A 1 201 6 HOH HOH . I 5 HOH A 2 202 14 HOH HOH . I 5 HOH A 3 203 22 HOH HOH . I 5 HOH A 4 204 8 HOH HOH . I 5 HOH A 5 205 49 HOH HOH . I 5 HOH A 6 206 48 HOH HOH . I 5 HOH A 7 207 13 HOH HOH . I 5 HOH A 8 208 11 HOH HOH . I 5 HOH A 9 209 41 HOH HOH . I 5 HOH A 10 210 12 HOH HOH . I 5 HOH A 11 211 3 HOH HOH . I 5 HOH A 12 212 5 HOH HOH . I 5 HOH A 13 213 61 HOH HOH . I 5 HOH A 14 214 2 HOH HOH . I 5 HOH A 15 215 7 HOH HOH . I 5 HOH A 16 216 64 HOH HOH . I 5 HOH A 17 217 10 HOH HOH . I 5 HOH A 18 218 52 HOH HOH . J 5 HOH B 1 301 20 HOH HOH . J 5 HOH B 2 302 68 HOH HOH . J 5 HOH B 3 303 18 HOH HOH . J 5 HOH B 4 304 23 HOH HOH . J 5 HOH B 5 305 63 HOH HOH . J 5 HOH B 6 306 21 HOH HOH . J 5 HOH B 7 307 24 HOH HOH . J 5 HOH B 8 308 1 HOH HOH . J 5 HOH B 9 309 25 HOH HOH . J 5 HOH B 10 310 65 HOH HOH . J 5 HOH B 11 311 19 HOH HOH . K 5 HOH C 1 201 62 HOH HOH . K 5 HOH C 2 202 29 HOH HOH . K 5 HOH C 3 203 16 HOH HOH . K 5 HOH C 4 204 66 HOH HOH . K 5 HOH C 5 205 67 HOH HOH . K 5 HOH C 6 206 30 HOH HOH . K 5 HOH C 7 207 26 HOH HOH . K 5 HOH C 8 208 69 HOH HOH . K 5 HOH C 9 209 60 HOH HOH . K 5 HOH C 10 210 35 HOH HOH . K 5 HOH C 11 211 31 HOH HOH . K 5 HOH C 12 212 33 HOH HOH . L 5 HOH D 1 301 28 HOH HOH . L 5 HOH D 2 302 58 HOH HOH . L 5 HOH D 3 303 55 HOH HOH . L 5 HOH D 4 304 37 HOH HOH . L 5 HOH D 5 305 56 HOH HOH . L 5 HOH D 6 306 47 HOH HOH . L 5 HOH D 7 307 9 HOH HOH . L 5 HOH D 8 308 53 HOH HOH . L 5 HOH D 9 309 43 HOH HOH . L 5 HOH D 10 310 51 HOH HOH . L 5 HOH D 11 311 27 HOH HOH . L 5 HOH D 12 312 40 HOH HOH . L 5 HOH D 13 313 44 HOH HOH . L 5 HOH D 14 314 59 HOH HOH . L 5 HOH D 15 315 36 HOH HOH . L 5 HOH D 16 316 57 HOH HOH . L 5 HOH D 17 317 39 HOH HOH . L 5 HOH D 18 318 42 HOH HOH . L 5 HOH D 19 319 45 HOH HOH . L 5 HOH D 20 320 32 HOH HOH . L 5 HOH D 21 321 34 HOH HOH . L 5 HOH D 22 322 54 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 105.72 _atom_site.Cartn_y 54.515 _atom_site.Cartn_z 115.721 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 38.91 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 201 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #