data_4ZIB
#
_model_server_result.job_id            AijSywGe4ZAoT-oU99zikg 
_model_server_result.datetime_utc      '2025-01-11 15:42:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4zib 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    4ZIB 
#
_exptl.entry_id    4ZIB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4ZIB 
_cell.length_a            105.14 
_cell.length_b            105.14 
_cell.length_c            70.92 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ZIB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        172 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 64' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 52.57 91.053911 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 233 A GLU 396 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc2 A OE1 GLU 233 A GLU 396 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? 
metalc ? metalc3 A OG SER 236 A SER 399 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc4 B MG MG . A MG 501 1_555 E O2G ATP . A ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc5 B MG MG . A MG 501 1_555 E O2B ATP . A ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc6 B MG MG . A MG 501 1_555 N O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc7 B MG MG . A MG 501 1_555 N O HOH . A HOH 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc8 B MG MG . A MG 501 1_555 N O HOH . A HOH 662 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc9 B MG MG . A MG 501 1_555 N O HOH . A HOH 693 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc10 C MG MG . A MG 502 1_555 E O1A ATP . A ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc11 C MG MG . A MG 502 1_555 E O1B ATP . A ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc12 C MG MG . A MG 502 1_555 N O HOH . A HOH 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc13 C MG MG . A MG 502 1_555 N O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc14 D MG MG . A MG 503 1_555 E O3G ATP . A ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc15 D MG MG . A MG 503 1_555 E O1B ATP . A ATP 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc16 D MG MG . A MG 503 1_555 N O HOH . A HOH 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc17 D MG MG . A MG 503 1_555 N O HOH . A HOH 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? 
metalc ? metalc18 D MG MG . A MG 503 1_555 N O HOH . A HOH 726 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4ZIB 
_atom_sites.fract_transf_matrix[1][1]    0.009511 
_atom_sites.fract_transf_matrix[1][2]    0.005491 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010983 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0141 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 501 501 MG MG . 
C 2 MG A 1 502 502 MG MG . 
D 2 MG A 1 503 503 MG MG . 
E 3 ATP A 1 504 504 ATP ATP . 
F 4 EDO A 1 505 505 EDO EDO . 
G 4 EDO A 1 506 506 EDO EDO . 
H 4 EDO A 1 507 507 EDO EDO . 
I 4 EDO A 1 508 508 EDO EDO . 
J 4 EDO A 1 509 509 EDO EDO . 
K 4 EDO A 1 510 510 EDO EDO . 
L 4 EDO A 1 511 511 EDO EDO . 
M 5 4OG A 1 512 512 4OG 4OG . 
N 6 HOH A 1 601 603 HOH HOH . 
N 6 HOH A 2 602 602 HOH HOH . 
N 6 HOH A 3 603 604 HOH HOH . 
N 6 HOH A 4 604 606 HOH HOH . 
N 6 HOH A 5 605 608 HOH HOH . 
N 6 HOH A 6 606 601 HOH HOH . 
N 6 HOH A 7 607 607 HOH HOH . 
N 6 HOH A 8 608 615 HOH HOH . 
N 6 HOH A 9 609 610 HOH HOH . 
N 6 HOH A 10 610 616 HOH HOH . 
N 6 HOH A 11 611 618 HOH HOH . 
N 6 HOH A 12 612 620 HOH HOH . 
N 6 HOH A 13 613 626 HOH HOH . 
N 6 HOH A 14 614 609 HOH HOH . 
N 6 HOH A 15 615 614 HOH HOH . 
N 6 HOH A 16 616 613 HOH HOH . 
N 6 HOH A 17 617 605 HOH HOH . 
N 6 HOH A 18 618 617 HOH HOH . 
N 6 HOH A 19 619 612 HOH HOH . 
N 6 HOH A 20 620 621 HOH HOH . 
N 6 HOH A 21 621 640 HOH HOH . 
N 6 HOH A 22 622 633 HOH HOH . 
N 6 HOH A 23 623 629 HOH HOH . 
N 6 HOH A 24 624 641 HOH HOH . 
N 6 HOH A 25 625 632 HOH HOH . 
N 6 HOH A 26 626 634 HOH HOH . 
N 6 HOH A 27 627 636 HOH HOH . 
N 6 HOH A 28 628 619 HOH HOH . 
N 6 HOH A 29 629 651 HOH HOH . 
N 6 HOH A 30 630 644 HOH HOH . 
N 6 HOH A 31 631 665 HOH HOH . 
N 6 HOH A 32 632 623 HOH HOH . 
N 6 HOH A 33 633 625 HOH HOH . 
N 6 HOH A 34 634 638 HOH HOH . 
N 6 HOH A 35 635 628 HOH HOH . 
N 6 HOH A 36 636 631 HOH HOH . 
N 6 HOH A 37 637 639 HOH HOH . 
N 6 HOH A 38 638 611 HOH HOH . 
N 6 HOH A 39 639 652 HOH HOH . 
N 6 HOH A 40 640 661 HOH HOH . 
N 6 HOH A 41 641 646 HOH HOH . 
N 6 HOH A 42 642 630 HOH HOH . 
N 6 HOH A 43 643 685 HOH HOH . 
N 6 HOH A 44 644 624 HOH HOH . 
N 6 HOH A 45 645 655 HOH HOH . 
N 6 HOH A 46 646 645 HOH HOH . 
N 6 HOH A 47 647 649 HOH HOH . 
N 6 HOH A 48 648 643 HOH HOH . 
N 6 HOH A 49 649 622 HOH HOH . 
N 6 HOH A 50 650 642 HOH HOH . 
N 6 HOH A 51 651 635 HOH HOH . 
N 6 HOH A 52 652 627 HOH HOH . 
N 6 HOH A 53 653 650 HOH HOH . 
N 6 HOH A 54 654 654 HOH HOH . 
N 6 HOH A 55 655 647 HOH HOH . 
N 6 HOH A 56 656 668 HOH HOH . 
N 6 HOH A 57 657 690 HOH HOH . 
N 6 HOH A 58 658 667 HOH HOH . 
N 6 HOH A 59 659 660 HOH HOH . 
N 6 HOH A 60 660 672 HOH HOH . 
N 6 HOH A 61 661 657 HOH HOH . 
N 6 HOH A 62 662 658 HOH HOH . 
N 6 HOH A 63 663 681 HOH HOH . 
N 6 HOH A 64 664 678 HOH HOH . 
N 6 HOH A 65 665 662 HOH HOH . 
N 6 HOH A 66 666 671 HOH HOH . 
N 6 HOH A 67 667 674 HOH HOH . 
N 6 HOH A 68 668 637 HOH HOH . 
N 6 HOH A 69 669 679 HOH HOH . 
N 6 HOH A 70 670 659 HOH HOH . 
N 6 HOH A 71 671 648 HOH HOH . 
N 6 HOH A 72 672 653 HOH HOH . 
N 6 HOH A 73 673 656 HOH HOH . 
N 6 HOH A 74 674 673 HOH HOH . 
N 6 HOH A 75 675 663 HOH HOH . 
N 6 HOH A 76 676 670 HOH HOH . 
N 6 HOH A 77 677 664 HOH HOH . 
N 6 HOH A 78 678 666 HOH HOH . 
N 6 HOH A 79 679 683 HOH HOH . 
N 6 HOH A 80 680 669 HOH HOH . 
N 6 HOH A 81 681 677 HOH HOH . 
N 6 HOH A 82 682 695 HOH HOH . 
N 6 HOH A 83 683 675 HOH HOH . 
N 6 HOH A 84 684 682 HOH HOH . 
N 6 HOH A 85 685 702 HOH HOH . 
N 6 HOH A 86 686 688 HOH HOH . 
N 6 HOH A 87 687 701 HOH HOH . 
N 6 HOH A 88 688 698 HOH HOH . 
N 6 HOH A 89 689 704 HOH HOH . 
N 6 HOH A 90 690 691 HOH HOH . 
N 6 HOH A 91 691 684 HOH HOH . 
N 6 HOH A 92 692 686 HOH HOH . 
N 6 HOH A 93 693 689 HOH HOH . 
N 6 HOH A 94 694 693 HOH HOH . 
N 6 HOH A 95 695 694 HOH HOH . 
N 6 HOH A 96 696 676 HOH HOH . 
N 6 HOH A 97 697 699 HOH HOH . 
N 6 HOH A 98 698 696 HOH HOH . 
N 6 HOH A 99 699 687 HOH HOH . 
N 6 HOH A 100 700 692 HOH HOH . 
N 6 HOH A 101 701 706 HOH HOH . 
N 6 HOH A 102 702 697 HOH HOH . 
N 6 HOH A 103 703 680 HOH HOH . 
N 6 HOH A 104 704 700 HOH HOH . 
N 6 HOH A 105 705 707 HOH HOH . 
N 6 HOH A 106 706 703 HOH HOH . 
N 6 HOH A 107 707 705 HOH HOH . 
N 6 HOH A 108 708 710 HOH HOH . 
N 6 HOH A 109 709 711 HOH HOH . 
N 6 HOH A 110 710 708 HOH HOH . 
N 6 HOH A 111 711 715 HOH HOH . 
N 6 HOH A 112 712 709 HOH HOH . 
N 6 HOH A 113 713 712 HOH HOH . 
N 6 HOH A 114 714 717 HOH HOH . 
N 6 HOH A 115 715 713 HOH HOH . 
N 6 HOH A 116 716 714 HOH HOH . 
N 6 HOH A 117 717 720 HOH HOH . 
N 6 HOH A 118 718 719 HOH HOH . 
N 6 HOH A 119 719 722 HOH HOH . 
N 6 HOH A 120 720 725 HOH HOH . 
N 6 HOH A 121 721 721 HOH HOH . 
N 6 HOH A 122 722 718 HOH HOH . 
N 6 HOH A 123 723 727 HOH HOH . 
N 6 HOH A 124 724 723 HOH HOH . 
N 6 HOH A 125 725 726 HOH HOH . 
N 6 HOH A 126 726 724 HOH HOH . 
N 6 HOH A 127 727 728 HOH HOH . 
N 6 HOH A 128 728 729 HOH HOH . 
N 6 HOH A 129 729 735 HOH HOH . 
N 6 HOH A 130 730 716 HOH HOH . 
N 6 HOH A 131 731 730 HOH HOH . 
N 6 HOH A 132 732 732 HOH HOH . 
N 6 HOH A 133 733 734 HOH HOH . 
N 6 HOH A 134 734 733 HOH HOH . 
N 6 HOH A 135 735 731 HOH HOH . 
N 6 HOH A 136 736 736 HOH HOH . 
N 6 HOH A 137 737 737 HOH HOH . 
N 6 HOH A 138 738 738 HOH HOH . 
N 6 HOH A 139 739 739 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               10.568 
_atom_site.Cartn_y               36.12 
_atom_site.Cartn_z               38.544 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        41.84 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#