data_4ZID # _model_server_result.job_id JfKg7dHNU83jwtUs8lpUOQ _model_server_result.datetime_utc '2025-09-07 01:54:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zid # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 4ZID # _exptl.entry_id 4ZID _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZID _cell.length_a 45.808 _cell.length_b 45.808 _cell.length_c 78.304 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZID _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_465 y-1,x+1,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -68.712 39.670892 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 10 A CYS 10 1_555 B CAB HEC . A HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? metalc ? metalc1 A NE2 HIS 14 A HIS 14 1_555 B FE HEC . A HEC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc2 A SD MET 59 A MET 59 1_555 B FE HEC . A HEC 101 4_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 4ZID _atom_sites.fract_transf_matrix[1][1] 0.02183 _atom_sites.fract_transf_matrix[1][2] 0.012604 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025207 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012771 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 101 101 HEC HEC . C 3 HOH A 1 201 25 HOH HOH . C 3 HOH A 2 202 16 HOH HOH . C 3 HOH A 3 203 24 HOH HOH . C 3 HOH A 4 204 20 HOH HOH . C 3 HOH A 5 205 18 HOH HOH . C 3 HOH A 6 206 4 HOH HOH . C 3 HOH A 7 207 14 HOH HOH . C 3 HOH A 8 208 1 HOH HOH . C 3 HOH A 9 209 23 HOH HOH . C 3 HOH A 10 210 28 HOH HOH . C 3 HOH A 11 211 12 HOH HOH . C 3 HOH A 12 212 17 HOH HOH . C 3 HOH A 13 213 10 HOH HOH . C 3 HOH A 14 214 9 HOH HOH . C 3 HOH A 15 215 7 HOH HOH . C 3 HOH A 16 216 29 HOH HOH . C 3 HOH A 17 217 3 HOH HOH . C 3 HOH A 18 218 27 HOH HOH . C 3 HOH A 19 219 19 HOH HOH . C 3 HOH A 20 220 11 HOH HOH . C 3 HOH A 21 221 2 HOH HOH . C 3 HOH A 22 222 8 HOH HOH . C 3 HOH A 23 223 22 HOH HOH . C 3 HOH A 24 224 15 HOH HOH . C 3 HOH A 25 225 26 HOH HOH . C 3 HOH A 26 226 13 HOH HOH . C 3 HOH A 27 227 6 HOH HOH . C 3 HOH A 28 228 5 HOH HOH . C 3 HOH A 29 229 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 -47.172 23.836 -0.139 1 23.79 ? FE HEC 101 A 1 HETATM 2 C CHA HEC . . . B 2 -44.244 25.597 0.376 1 23.66 ? CHA HEC 101 A 1 HETATM 3 C CHB HEC . . . B 2 -48.072 24.207 3.1 1 22 ? CHB HEC 101 A 1 HETATM 4 C CHC HEC . . . B 2 -50.174 22.523 -0.772 1 26.09 ? CHC HEC 101 A 1 HETATM 5 C CHD HEC . . . B 2 -46.121 23.009 -3.329 1 24.93 ? CHD HEC 101 A 1 HETATM 6 N NA HEC . . . B 2 -46.377 24.731 1.394 1 22.25 ? NA HEC 101 A 1 HETATM 7 C C1A HEC . . . B 2 -45.117 25.401 1.465 1 26.46 ? C1A HEC 101 A 1 HETATM 8 C C2A HEC . . . B 2 -44.871 25.844 2.802 1 25.93 ? C2A HEC 101 A 1 HETATM 9 C C3A HEC . . . B 2 -45.912 25.49 3.614 1 23.81 ? C3A HEC 101 A 1 HETATM 10 C C4A HEC . . . B 2 -46.864 24.742 2.723 1 20.7 ? C4A HEC 101 A 1 HETATM 11 C CMA HEC . . . B 2 -46.078 25.748 5.099 1 25.79 ? CMA HEC 101 A 1 HETATM 12 C CAA HEC . . . B 2 -43.594 26.691 3.207 1 27.71 ? CAA HEC 101 A 1 HETATM 13 C CBA HEC . . . B 2 -43.73 28.159 2.701 1 31.03 ? CBA HEC 101 A 1 HETATM 14 C CGA HEC . . . B 2 -42.537 29.062 2.986 1 31.29 ? CGA HEC 101 A 1 HETATM 15 O O1A HEC . . . B 2 -41.599 28.566 3.648 1 27.84 ? O1A HEC 101 A 1 HETATM 16 O O2A HEC . . . B 2 -42.586 30.218 2.446 1 26.6 ? O2A HEC 101 A 1 HETATM 17 N NB HEC . . . B 2 -48.746 23.476 0.976 1 22.87 ? NB HEC 101 A 1 HETATM 18 C C1B HEC . . . B 2 -49.002 23.661 2.3 1 20.88 ? C1B HEC 101 A 1 HETATM 19 C C2B HEC . . . B 2 -50.376 23.372 2.669 1 23.9 ? C2B HEC 101 A 1 HETATM 20 C C3B HEC . . . B 2 -50.949 22.878 1.603 1 24.1 ? C3B HEC 101 A 1 HETATM 21 C C4B HEC . . . B 2 -49.953 22.989 0.512 1 25.24 ? C4B HEC 101 A 1 HETATM 22 C CMB HEC . . . B 2 -50.766 23.409 4.108 1 25.93 ? CMB HEC 101 A 1 HETATM 23 C CAB HEC . . . B 2 -52.41 22.407 1.408 1 27.85 ? CAB HEC 101 A 1 HETATM 24 C CBB HEC . . . B 2 -53.432 23.45 1.98 1 31.7 ? CBB HEC 101 A 1 HETATM 25 N NC HEC . . . B 2 -47.958 22.9 -1.719 1 26.51 ? NC HEC 101 A 1 HETATM 26 C C1C HEC . . . B 2 -49.256 22.431 -1.781 1 25.9 ? C1C HEC 101 A 1 HETATM 27 C C2C HEC . . . B 2 -49.498 21.782 -3.061 1 25.45 ? C2C HEC 101 A 1 HETATM 28 C C3C HEC . . . B 2 -48.405 21.966 -3.784 1 26.5 ? C3C HEC 101 A 1 HETATM 29 C C4C HEC . . . B 2 -47.424 22.68 -2.966 1 26.47 ? C4C HEC 101 A 1 HETATM 30 C CMC HEC . . . B 2 -50.795 21.197 -3.556 1 26.29 ? CMC HEC 101 A 1 HETATM 31 C CAC HEC . . . B 2 -48.002 21.529 -5.207 1 29.29 ? CAC HEC 101 A 1 HETATM 32 C CBC HEC . . . B 2 -48.997 21.448 -6.357 1 26.28 ? CBC HEC 101 A 1 HETATM 33 N ND HEC . . . B 2 -45.492 24.21 -1.28 1 23.93 ? ND HEC 101 A 1 HETATM 34 C C1D HEC . . . B 2 -45.286 23.728 -2.541 1 24.78 ? C1D HEC 101 A 1 HETATM 35 C C2D HEC . . . B 2 -44.024 24.272 -3.008 1 23.04 ? C2D HEC 101 A 1 HETATM 36 C C3D HEC . . . B 2 -43.412 25.08 -1.886 1 22.64 ? C3D HEC 101 A 1 HETATM 37 C C4D HEC . . . B 2 -44.398 24.987 -0.845 1 25.91 ? C4D HEC 101 A 1 HETATM 38 C CMD HEC . . . B 2 -43.484 23.95 -4.387 1 27.52 ? CMD HEC 101 A 1 HETATM 39 C CAD HEC . . . B 2 -42.131 25.886 -1.926 1 26.86 ? CAD HEC 101 A 1 HETATM 40 C CBD HEC . . . B 2 -42.435 27.347 -2.296 1 27.76 ? CBD HEC 101 A 1 HETATM 41 C CGD HEC . . . B 2 -41.157 28.299 -2.255 1 25.89 ? CGD HEC 101 A 1 HETATM 42 O O1D HEC . . . B 2 -41.293 29.38 -1.691 1 31.02 ? O1D HEC 101 A 1 HETATM 43 O O2D HEC . . . B 2 -40.139 27.688 -2.658 1 33.49 ? O2D HEC 101 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #