data_4ZIV # _model_server_result.job_id b6yetOxz-m6OU23nQMtrlQ _model_server_result.datetime_utc '2024-11-16 16:01:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ziv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1101}' # _entry.id 4ZIV # _exptl.entry_id 4ZIV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.74 _cell.angle_gamma 90 _cell.entry_id 4ZIV _cell.length_a 152.278 _cell.length_b 157.491 _cell.length_c 219.155 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZIV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K 1 1 D,E,F,L,M,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 J N N ? 2 L N N ? 2 M N N ? 2 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 525 A HIS 525 1_555 H NI NI . A NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc2 A OD2 ASP 529 A ASP 529 1_555 H NI NI . A NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc3 H NI NI . A NI 1102 2_646 B NE2 HIS 525 B HIS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc4 H NI NI . A NI 1102 2_646 B OD1 ASP 529 B ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc5 H NI NI . A NI 1102 2_646 B OD2 ASP 529 B ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc6 C NE2 HIS 525 C HIS 525 1_555 K NI NI . C NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc7 C OD1 ASP 529 C ASP 529 1_555 K NI NI . C NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc8 C OD2 ASP 529 C ASP 529 1_555 K NI NI . C NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? metalc ? metalc9 K NI NI . C NI 1102 1_554 D NE2 HIS 525 D HIS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc10 K NI NI . C NI 1102 1_554 D OD1 ASP 529 D ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc11 K NI NI . C NI 1102 1_554 D OD2 ASP 529 D ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc12 E NE2 HIS 525 E HIS 525 1_555 N NI NI . E NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc13 E OD1 ASP 529 E ASP 529 1_555 N NI NI . E NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc14 E OD2 ASP 529 E ASP 529 1_555 N NI NI . E NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc15 N NI NI . E NI 1102 2_545 F NE2 HIS 525 F HIS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc16 N NI NI . E NI 1102 2_545 F OD1 ASP 529 F ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc17 N NI NI . E NI 1102 2_545 F OD2 ASP 529 F ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 192 n n C1B O1B LMT sing 193 n n C1B O5B LMT sing 194 n n C1B H1B LMT sing 195 n n C2B C3B LMT sing 196 n n C2B O2B LMT sing 197 n n C2B H2B LMT sing 198 n n C3B C4B LMT sing 199 n n C3B O3B LMT sing 200 n n C3B H3B LMT sing 201 n n C4B C5B LMT sing 202 n n C4B O4' LMT sing 203 n n C4B H4B LMT sing 204 n n C5B C6B LMT sing 205 n n C5B O5B LMT sing 206 n n C5B H5B LMT sing 207 n n C6B O6B LMT sing 208 n n C6B "H6'2" LMT sing 209 n n C6B "H6'1" LMT sing 210 n n O1B C4' LMT sing 211 n n O2B H2O1 LMT sing 212 n n O3B H3O1 LMT sing 213 n n O4' H4O1 LMT sing 214 n n O6B H6B LMT sing 215 n n C1' C2' LMT sing 216 n n C1' O1' LMT sing 217 n n C1' O5' LMT sing 218 n n C1' H1' LMT sing 219 n n C2' C3' LMT sing 220 n n C2' O2' LMT sing 221 n n C2' H2' LMT sing 222 n n C3' C4' LMT sing 223 n n C3' O3' LMT sing 224 n n C3' H3' LMT sing 225 n n C4' C5' LMT sing 226 n n C4' H4' LMT sing 227 n n C5' C6' LMT sing 228 n n C5' O5' LMT sing 229 n n C5' H5' LMT sing 230 n n C6' O6' LMT sing 231 n n C6' H6D LMT sing 232 n n C6' H6E LMT sing 233 n n O1' C1 LMT sing 234 n n O2' H2O2 LMT sing 235 n n O3' H3O2 LMT sing 236 n n O6' H6' LMT sing 237 n n C1 C2 LMT sing 238 n n C1 H12 LMT sing 239 n n C1 H11 LMT sing 240 n n C2 C3 LMT sing 241 n n C2 H22 LMT sing 242 n n C2 H21 LMT sing 243 n n C3 C4 LMT sing 244 n n C3 H32 LMT sing 245 n n C3 H31 LMT sing 246 n n C4 C5 LMT sing 247 n n C4 H42 LMT sing 248 n n C4 H41 LMT sing 249 n n C5 C6 LMT sing 250 n n C5 H52 LMT sing 251 n n C5 H51 LMT sing 252 n n C6 C7 LMT sing 253 n n C6 H62 LMT sing 254 n n C6 H61 LMT sing 255 n n C7 C8 LMT sing 256 n n C7 H72 LMT sing 257 n n C7 H71 LMT sing 258 n n C8 C9 LMT sing 259 n n C8 H82 LMT sing 260 n n C8 H81 LMT sing 261 n n C9 C10 LMT sing 262 n n C9 H92 LMT sing 263 n n C9 H91 LMT sing 264 n n C10 C11 LMT sing 265 n n C10 H102 LMT sing 266 n n C10 H101 LMT sing 267 n n C11 C12 LMT sing 268 n n C11 H112 LMT sing 269 n n C11 H111 LMT sing 270 n n C12 H123 LMT sing 271 n n C12 H122 LMT sing 272 n n C12 H121 LMT sing 273 n n # _atom_sites.entry_id 4ZIV _atom_sites.fract_transf_matrix[1][1] 0.006567 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000314 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00635 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 LMT A 1 1101 2000 LMT DDM . H 3 NI A 1 1102 3000 NI NI . I 2 LMT B 1 1101 2000 LMT DDM . J 2 LMT C 1 1101 2000 LMT DDM . K 3 NI C 1 1102 3000 NI NI . L 2 LMT D 1 1101 2000 LMT DDM . M 2 LMT E 1 1101 2000 LMT DDM . N 3 NI E 1 1102 3000 NI NI . O 2 LMT F 1 1101 2000 LMT DDM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . J 2 23.877 -9.36 163.343 1 47.66 ? C1B LMT 1101 C 1 HETATM 2 C C2B LMT . . . J 2 24.908 -9.09 164.444 1 41.79 ? C2B LMT 1101 C 1 HETATM 3 C C3B LMT . . . J 2 25.783 -10.226 164.82 1 46.11 ? C3B LMT 1101 C 1 HETATM 4 C C4B LMT . . . J 2 25.531 -11.583 164.219 1 50.34 ? C4B LMT 1101 C 1 HETATM 5 C C5B LMT . . . J 2 24.155 -11.802 163.622 1 51.75 ? C5B LMT 1101 C 1 HETATM 6 C C6B LMT . . . J 2 23.07 -11.828 164.671 1 63.41 ? C6B LMT 1101 C 1 HETATM 7 O O1B LMT . . . J 2 23.838 -8.368 162.379 1 52.94 ? O1B LMT 1101 C 1 HETATM 8 O O2B LMT . . . J 2 25.729 -7.928 164.152 1 47.78 ? O2B LMT 1101 C 1 HETATM 9 O O3B LMT . . . J 2 27.198 -9.892 164.504 1 39.83 ? O3B LMT 1101 C 1 HETATM 10 O O4' LMT . . . J 2 26.484 -11.716 163.159 1 48.06 ? O4' LMT 1101 C 1 HETATM 11 O O5B LMT . . . J 2 24.03 -10.704 162.672 1 49.99 ? O5B LMT 1101 C 1 HETATM 12 O O6B LMT . . . J 2 22.159 -12.936 164.588 1 56.09 ? O6B LMT 1101 C 1 HETATM 13 C C1' LMT . . . J 2 21.303 -6.449 159.792 1 45.52 ? C1' LMT 1101 C 1 HETATM 14 C C2' LMT . . . J 2 21.514 -5.865 161.123 1 41.35 ? C2' LMT 1101 C 1 HETATM 15 C C3' LMT . . . J 2 22.661 -6.439 161.778 1 36.84 ? C3' LMT 1101 C 1 HETATM 16 C C4' LMT . . . J 2 22.543 -7.912 162.026 1 42.81 ? C4' LMT 1101 C 1 HETATM 17 C C5' LMT . . . J 2 22.059 -8.699 160.764 1 39.77 ? C5' LMT 1101 C 1 HETATM 18 C C6' LMT . . . J 2 21.394 -9.881 161.095 1 43.96 ? C6' LMT 1101 C 1 HETATM 19 O O1' LMT . . . J 2 20.162 -5.843 159.115 1 36.92 ? O1' LMT 1101 C 1 HETATM 20 O O2' LMT . . . J 2 21.782 -4.426 160.985 1 44.46 ? O2' LMT 1101 C 1 HETATM 21 O O3' LMT . . . J 2 22.772 -5.685 163.023 1 40.1 ? O3' LMT 1101 C 1 HETATM 22 O O5' LMT . . . J 2 21.049 -7.915 159.921 1 51.15 ? O5' LMT 1101 C 1 HETATM 23 O O6' LMT . . . J 2 21.831 -10.81 160.131 1 47.88 ? O6' LMT 1101 C 1 HETATM 24 C C1 LMT . . . J 2 20.457 -4.896 158.059 1 31.68 ? C1 LMT 1101 C 1 HETATM 25 C C2 LMT . . . J 2 19.458 -5.158 156.883 1 35.45 ? C2 LMT 1101 C 1 HETATM 26 C C3 LMT . . . J 2 18.53 -3.972 156.51 1 29.83 ? C3 LMT 1101 C 1 HETATM 27 C C4 LMT . . . J 2 17.823 -4.206 155.177 1 29.13 ? C4 LMT 1101 C 1 HETATM 28 C C5 LMT . . . J 2 16.293 -3.698 155.088 1 34.83 ? C5 LMT 1101 C 1 HETATM 29 C C6 LMT . . . J 2 16.127 -2.214 154.859 1 37.93 ? C6 LMT 1101 C 1 HETATM 30 C C7 LMT . . . J 2 16.305 -1.386 156.179 1 43.49 ? C7 LMT 1101 C 1 HETATM 31 C C8 LMT . . . J 2 15.91 0.145 156 1 57.35 ? C8 LMT 1101 C 1 HETATM 32 C C9 LMT . . . J 2 17.109 1.083 155.876 1 53.8 ? C9 LMT 1101 C 1 HETATM 33 C C10 LMT . . . J 2 16.922 2.147 154.757 1 55.92 ? C10 LMT 1101 C 1 HETATM 34 C C11 LMT . . . J 2 18.206 2.274 153.842 1 62.89 ? C11 LMT 1101 C 1 HETATM 35 C C12 LMT . . . J 2 18.205 3.44 152.845 1 65.25 ? C12 LMT 1101 C 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 384 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #