data_4ZJ0 # _model_server_result.job_id EGa2qQhoE1J0podImGL90w _model_server_result.datetime_utc '2024-11-15 06:55:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zj0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 4ZJ0 # _exptl.entry_id 4ZJ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90.94 _cell.angle_beta 91.99 _cell.angle_gamma 113.93 _cell.entry_id 4ZJ0 _cell.length_a 30.081 _cell.length_b 36.049 _cell.length_c 63.92 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZJ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 108 A LYS 108 1_555 D C15 RET . A RET 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.263 ? covale ? covale2 B NZ LYS 108 B LYS 108 1_555 E C15 RET . B RET 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.258 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 266 n n C1 C6 RET sing 267 n n C1 C16 RET sing 268 n n C1 C17 RET sing 269 n n C2 C3 RET sing 270 n n C2 H21 RET sing 271 n n C2 H22 RET sing 272 n n C3 C4 RET sing 273 n n C3 H31 RET sing 274 n n C3 H32 RET sing 275 n n C4 C5 RET sing 276 n n C4 H41 RET sing 277 n n C4 H42 RET sing 278 n n C5 C6 RET doub 279 n n C5 C18 RET sing 280 n n C6 C7 RET sing 281 n n C7 C8 RET doub 282 e n C7 H7 RET sing 283 n n C8 C9 RET sing 284 n n C8 H8 RET sing 285 n n C9 C10 RET doub 286 e n C9 C19 RET sing 287 n n C10 C11 RET sing 288 n n C10 H10 RET sing 289 n n C11 C12 RET doub 290 e n C11 H11 RET sing 291 n n C12 C13 RET sing 292 n n C12 H12 RET sing 293 n n C13 C14 RET doub 294 e n C13 C20 RET sing 295 n n C14 C15 RET sing 296 n n C14 H14 RET sing 297 n n C15 O1 RET doub 298 n n C15 H15 RET sing 299 n n C16 H161 RET sing 300 n n C16 H162 RET sing 301 n n C16 H163 RET sing 302 n n C17 H171 RET sing 303 n n C17 H172 RET sing 304 n n C17 H173 RET sing 305 n n C18 H181 RET sing 306 n n C18 H182 RET sing 307 n n C18 H183 RET sing 308 n n C19 H191 RET sing 309 n n C19 H192 RET sing 310 n n C19 H193 RET sing 311 n n C20 H201 RET sing 312 n n C20 H202 RET sing 313 n n C20 H203 RET sing 314 n n # _atom_sites.entry_id 4ZJ0 _atom_sites.fract_transf_matrix[1][1] 0.033244 _atom_sites.fract_transf_matrix[1][2] 0.01475 _atom_sites.fract_transf_matrix[1][3] 0.001651 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030348 _atom_sites.fract_transf_matrix[2][3] 0.001016 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015663 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT A 1 201 1 ACT ACT . D 3 RET A 1 202 1 RET RET . E 3 RET B 1 201 1 RET RET . F 2 ACT B 1 202 1 ACT ACT . G 4 HOH A 1 301 174 HOH HOH . G 4 HOH A 2 302 137 HOH HOH . G 4 HOH A 3 303 206 HOH HOH . G 4 HOH A 4 304 6 HOH HOH . G 4 HOH A 5 305 183 HOH HOH . G 4 HOH A 6 306 196 HOH HOH . G 4 HOH A 7 307 45 HOH HOH . G 4 HOH A 8 308 30 HOH HOH . G 4 HOH A 9 309 171 HOH HOH . G 4 HOH A 10 310 178 HOH HOH . G 4 HOH A 11 311 9 HOH HOH . G 4 HOH A 12 312 48 HOH HOH . G 4 HOH A 13 313 160 HOH HOH . G 4 HOH A 14 314 177 HOH HOH . G 4 HOH A 15 315 144 HOH HOH . G 4 HOH A 16 316 64 HOH HOH . G 4 HOH A 17 317 101 HOH HOH . G 4 HOH A 18 318 97 HOH HOH . G 4 HOH A 19 319 4 HOH HOH . G 4 HOH A 20 320 49 HOH HOH . G 4 HOH A 21 321 191 HOH HOH . G 4 HOH A 22 322 112 HOH HOH . G 4 HOH A 23 323 110 HOH HOH . G 4 HOH A 24 324 195 HOH HOH . G 4 HOH A 25 325 6 HOH HOH . G 4 HOH A 26 326 59 HOH HOH . G 4 HOH A 27 327 2 HOH HOH . G 4 HOH A 28 328 168 HOH HOH . G 4 HOH A 29 329 136 HOH HOH . G 4 HOH A 30 330 84 HOH HOH . G 4 HOH A 31 331 121 HOH HOH . G 4 HOH A 32 332 12 HOH HOH . G 4 HOH A 33 333 38 HOH HOH . G 4 HOH A 34 334 2 HOH HOH . G 4 HOH A 35 335 11 HOH HOH . G 4 HOH A 36 336 70 HOH HOH . G 4 HOH A 37 337 37 HOH HOH . G 4 HOH A 38 338 58 HOH HOH . G 4 HOH A 39 339 77 HOH HOH . G 4 HOH A 40 340 51 HOH HOH . G 4 HOH A 41 341 24 HOH HOH . G 4 HOH A 42 342 8 HOH HOH . G 4 HOH A 43 343 71 HOH HOH . G 4 HOH A 44 344 1 HOH HOH . G 4 HOH A 45 345 118 HOH HOH . G 4 HOH A 46 346 88 HOH HOH . G 4 HOH A 47 347 76 HOH HOH . G 4 HOH A 48 348 145 HOH HOH . G 4 HOH A 49 349 80 HOH HOH . G 4 HOH A 50 350 53 HOH HOH . G 4 HOH A 51 351 52 HOH HOH . G 4 HOH A 52 352 10 HOH HOH . G 4 HOH A 53 353 40 HOH HOH . G 4 HOH A 54 354 66 HOH HOH . G 4 HOH A 55 355 126 HOH HOH . G 4 HOH A 56 356 134 HOH HOH . G 4 HOH A 57 357 13 HOH HOH . G 4 HOH A 58 358 165 HOH HOH . G 4 HOH A 59 359 33 HOH HOH . G 4 HOH A 60 360 109 HOH HOH . G 4 HOH A 61 361 3 HOH HOH . G 4 HOH A 62 362 189 HOH HOH . G 4 HOH A 63 363 139 HOH HOH . G 4 HOH A 64 364 68 HOH HOH . G 4 HOH A 65 365 23 HOH HOH . G 4 HOH A 66 366 69 HOH HOH . G 4 HOH A 67 367 21 HOH HOH . G 4 HOH A 68 368 103 HOH HOH . G 4 HOH A 69 369 50 HOH HOH . G 4 HOH A 70 370 205 HOH HOH . G 4 HOH A 71 371 39 HOH HOH . G 4 HOH A 72 372 22 HOH HOH . G 4 HOH A 73 373 153 HOH HOH . G 4 HOH A 74 374 4 HOH HOH . G 4 HOH A 75 375 100 HOH HOH . G 4 HOH A 76 376 131 HOH HOH . G 4 HOH A 77 377 152 HOH HOH . G 4 HOH A 78 378 32 HOH HOH . G 4 HOH A 79 379 130 HOH HOH . G 4 HOH A 80 380 117 HOH HOH . G 4 HOH A 81 381 92 HOH HOH . G 4 HOH A 82 382 186 HOH HOH . G 4 HOH A 83 383 46 HOH HOH . G 4 HOH A 84 384 78 HOH HOH . G 4 HOH A 85 385 108 HOH HOH . G 4 HOH A 86 386 208 HOH HOH . G 4 HOH A 87 387 3 HOH HOH . G 4 HOH A 88 388 47 HOH HOH . G 4 HOH A 89 389 149 HOH HOH . G 4 HOH A 90 390 87 HOH HOH . G 4 HOH A 91 391 55 HOH HOH . G 4 HOH A 92 392 63 HOH HOH . G 4 HOH A 93 393 146 HOH HOH . G 4 HOH A 94 394 210 HOH HOH . G 4 HOH A 95 395 124 HOH HOH . G 4 HOH A 96 396 41 HOH HOH . G 4 HOH A 97 397 125 HOH HOH . G 4 HOH A 98 398 132 HOH HOH . G 4 HOH A 99 399 8 HOH HOH . G 4 HOH A 100 400 169 HOH HOH . G 4 HOH A 101 401 127 HOH HOH . G 4 HOH A 102 402 105 HOH HOH . G 4 HOH A 103 403 155 HOH HOH . G 4 HOH A 104 404 192 HOH HOH . G 4 HOH A 105 405 198 HOH HOH . G 4 HOH A 106 406 193 HOH HOH . G 4 HOH A 107 407 203 HOH HOH . G 4 HOH A 108 408 135 HOH HOH . G 4 HOH A 109 409 65 HOH HOH . G 4 HOH A 110 410 9 HOH HOH . G 4 HOH A 111 411 202 HOH HOH . G 4 HOH A 112 412 90 HOH HOH . G 4 HOH A 113 413 120 HOH HOH . G 4 HOH A 114 414 199 HOH HOH . G 4 HOH A 115 415 5 HOH HOH . G 4 HOH A 116 416 7 HOH HOH . G 4 HOH A 117 417 96 HOH HOH . H 4 HOH B 1 301 159 HOH HOH . H 4 HOH B 2 302 95 HOH HOH . H 4 HOH B 3 303 209 HOH HOH . H 4 HOH B 4 304 172 HOH HOH . H 4 HOH B 5 305 190 HOH HOH . H 4 HOH B 6 306 147 HOH HOH . H 4 HOH B 7 307 35 HOH HOH . H 4 HOH B 8 308 128 HOH HOH . H 4 HOH B 9 309 56 HOH HOH . H 4 HOH B 10 310 180 HOH HOH . H 4 HOH B 11 311 143 HOH HOH . H 4 HOH B 12 312 61 HOH HOH . H 4 HOH B 13 313 158 HOH HOH . H 4 HOH B 14 314 162 HOH HOH . H 4 HOH B 15 315 122 HOH HOH . H 4 HOH B 16 316 176 HOH HOH . H 4 HOH B 17 317 161 HOH HOH . H 4 HOH B 18 318 17 HOH HOH . H 4 HOH B 19 319 60 HOH HOH . H 4 HOH B 20 320 187 HOH HOH . H 4 HOH B 21 321 86 HOH HOH . H 4 HOH B 22 322 82 HOH HOH . H 4 HOH B 23 323 25 HOH HOH . H 4 HOH B 24 324 197 HOH HOH . H 4 HOH B 25 325 119 HOH HOH . H 4 HOH B 26 326 123 HOH HOH . H 4 HOH B 27 327 19 HOH HOH . H 4 HOH B 28 328 18 HOH HOH . H 4 HOH B 29 329 36 HOH HOH . H 4 HOH B 30 330 12 HOH HOH . H 4 HOH B 31 331 173 HOH HOH . H 4 HOH B 32 332 211 HOH HOH . H 4 HOH B 33 333 57 HOH HOH . H 4 HOH B 34 334 207 HOH HOH . H 4 HOH B 35 335 5 HOH HOH . H 4 HOH B 36 336 44 HOH HOH . H 4 HOH B 37 337 185 HOH HOH . H 4 HOH B 38 338 29 HOH HOH . H 4 HOH B 39 339 27 HOH HOH . H 4 HOH B 40 340 163 HOH HOH . H 4 HOH B 41 341 2 HOH HOH . H 4 HOH B 42 342 170 HOH HOH . H 4 HOH B 43 343 142 HOH HOH . H 4 HOH B 44 344 181 HOH HOH . H 4 HOH B 45 345 99 HOH HOH . H 4 HOH B 46 346 20 HOH HOH . H 4 HOH B 47 347 14 HOH HOH . H 4 HOH B 48 348 93 HOH HOH . H 4 HOH B 49 349 85 HOH HOH . H 4 HOH B 50 350 74 HOH HOH . H 4 HOH B 51 351 83 HOH HOH . H 4 HOH B 52 352 164 HOH HOH . H 4 HOH B 53 353 141 HOH HOH . H 4 HOH B 54 354 15 HOH HOH . H 4 HOH B 55 355 26 HOH HOH . H 4 HOH B 56 356 89 HOH HOH . H 4 HOH B 57 357 129 HOH HOH . H 4 HOH B 58 358 13 HOH HOH . H 4 HOH B 59 359 157 HOH HOH . H 4 HOH B 60 360 75 HOH HOH . H 4 HOH B 61 361 7 HOH HOH . H 4 HOH B 62 362 107 HOH HOH . H 4 HOH B 63 363 10 HOH HOH . H 4 HOH B 64 364 72 HOH HOH . H 4 HOH B 65 365 34 HOH HOH . H 4 HOH B 66 366 114 HOH HOH . H 4 HOH B 67 367 102 HOH HOH . H 4 HOH B 68 368 106 HOH HOH . H 4 HOH B 69 369 54 HOH HOH . H 4 HOH B 70 370 148 HOH HOH . H 4 HOH B 71 371 151 HOH HOH . H 4 HOH B 72 372 154 HOH HOH . H 4 HOH B 73 373 28 HOH HOH . H 4 HOH B 74 374 188 HOH HOH . H 4 HOH B 75 375 113 HOH HOH . H 4 HOH B 76 376 156 HOH HOH . H 4 HOH B 77 377 1 HOH HOH . H 4 HOH B 78 378 175 HOH HOH . H 4 HOH B 79 379 11 HOH HOH . H 4 HOH B 80 380 115 HOH HOH . H 4 HOH B 81 381 167 HOH HOH . H 4 HOH B 82 382 42 HOH HOH . H 4 HOH B 83 383 43 HOH HOH . H 4 HOH B 84 384 116 HOH HOH . H 4 HOH B 85 385 184 HOH HOH . H 4 HOH B 86 386 182 HOH HOH . H 4 HOH B 87 387 150 HOH HOH . H 4 HOH B 88 388 16 HOH HOH . H 4 HOH B 89 389 98 HOH HOH . H 4 HOH B 90 390 73 HOH HOH . H 4 HOH B 91 391 91 HOH HOH . H 4 HOH B 92 392 67 HOH HOH . H 4 HOH B 93 393 81 HOH HOH . H 4 HOH B 94 394 31 HOH HOH . H 4 HOH B 95 395 194 HOH HOH . H 4 HOH B 96 396 133 HOH HOH . H 4 HOH B 97 397 94 HOH HOH . H 4 HOH B 98 398 201 HOH HOH . H 4 HOH B 99 399 138 HOH HOH . H 4 HOH B 100 400 104 HOH HOH . H 4 HOH B 101 401 111 HOH HOH . H 4 HOH B 102 402 179 HOH HOH . H 4 HOH B 103 403 62 HOH HOH . H 4 HOH B 104 404 200 HOH HOH . H 4 HOH B 105 405 166 HOH HOH . H 4 HOH B 106 406 14 HOH HOH . H 4 HOH B 107 407 15 HOH HOH . H 4 HOH B 108 408 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . E 3 -10.078 4.492 -24.607 1 46.24 ? C1 RET 201 B 1 HETATM 2 C C2 RET . . . E 3 -10.42 5.453 -23.472 1 45.34 ? C2 RET 201 B 1 HETATM 3 C C3 RET . . . E 3 -9.686 6.784 -23.486 1 46.13 ? C3 RET 201 B 1 HETATM 4 C C4 RET . . . E 3 -9.62 7.453 -24.853 1 45.13 ? C4 RET 201 B 1 HETATM 5 C C5 RET . . . E 3 -9.08 6.467 -25.873 1 44.12 ? C5 RET 201 B 1 HETATM 6 C C6 RET . . . E 3 -9.267 5.115 -25.762 1 43.66 ? C6 RET 201 B 1 HETATM 7 C C7 RET . . . E 3 -8.751 4.141 -26.789 1 45.93 ? C7 RET 201 B 1 HETATM 8 C C8 RET . . . E 3 -7.934 4.373 -27.834 1 45.59 ? C8 RET 201 B 1 HETATM 9 C C9 RET . . . E 3 -7.538 3.257 -28.736 1 43.05 ? C9 RET 201 B 1 HETATM 10 C C10 RET . . . E 3 -6.245 2.987 -29 1 40.21 ? C10 RET 201 B 1 HETATM 11 C C11 RET . . . E 3 -5.894 1.85 -29.863 1 40.88 ? C11 RET 201 B 1 HETATM 12 C C12 RET . . . E 3 -4.702 1.685 -30.486 1 36.07 ? C12 RET 201 B 1 HETATM 13 C C13 RET . . . E 3 -4.48 0.451 -31.319 1 31.27 ? C13 RET 201 B 1 HETATM 14 C C14 RET . . . E 3 -3.213 0.089 -31.521 1 29.46 ? C14 RET 201 B 1 HETATM 15 C C15 RET . . . E 3 -2.799 -1.082 -32.287 1 30.39 ? C15 RET 201 B 1 HETATM 16 C C16 RET . . . E 3 -11.411 4.019 -25.176 1 45.85 ? C16 RET 201 B 1 HETATM 17 C C17 RET . . . E 3 -9.366 3.275 -23.99 1 45.05 ? C17 RET 201 B 1 HETATM 18 C C18 RET . . . E 3 -8.318 7.089 -27.01 1 42.62 ? C18 RET 201 B 1 HETATM 19 C C19 RET . . . E 3 -8.606 2.396 -29.353 1 42.94 ? C19 RET 201 B 1 HETATM 20 C C20 RET . . . E 3 -5.646 -0.315 -31.906 1 28.8 ? C20 RET 201 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 1195 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 20 #