data_4ZJ8 # _model_server_result.job_id vPDV9zvl-QrWAaBdfCKcIA _model_server_result.datetime_utc '2024-11-24 15:29:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zj8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 4ZJ8 # _exptl.entry_id 4ZJ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 450.921 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(7R)-4-(5-chloro-1,3-benzoxazol-2-yl)-7-methyl-1,4-diazepan-1-yl][5-methyl-2-(2H-1,2,3-triazol-2-yl)phenyl]methanone' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZJ8 _cell.length_a 63.242 _cell.length_b 64.992 _cell.length_c 181.478 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZJ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 127 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 119 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 210 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 202 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.029 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H23 Cl N6 O2' _chem_comp.formula_weight 450.921 _chem_comp.id SUV _chem_comp.mon_nstd_flag . _chem_comp.name '[(7R)-4-(5-chloro-1,3-benzoxazol-2-yl)-7-methyl-1,4-diazepan-1-yl][5-methyl-2-(2H-1,2,3-triazol-2-yl)phenyl]methanone' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms suvorexant # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 N5 SUV doub 343 n y C27 C28 SUV sing 344 n y N5 N4 SUV sing 345 n y C28 N6 SUV doub 346 n y N4 N6 SUV sing 347 n y N4 C20 SUV sing 348 n n C21 C20 SUV doub 349 n y C21 C22 SUV sing 350 n y C20 C19 SUV sing 351 n y C22 C23 SUV doub 352 n y C12 N3 SUV sing 353 n n C12 C11 SUV sing 354 n n C19 C17 SUV sing 355 n n C19 C24 SUV doub 356 n y C23 C24 SUV sing 357 n y C23 C29 SUV sing 358 n n C30 C14 SUV sing 359 n n N3 C17 SUV sing 360 n n N3 C14 SUV sing 361 n n C17 O2 SUV doub 362 n n C11 N1 SUV sing 363 n n C7 C8 SUV doub 364 n y C7 C6 SUV sing 365 n y O1 C8 SUV sing 366 n y O1 C1 SUV sing 367 n y C14 C15 SUV sing 368 n n C8 C3 SUV sing 369 n y C6 C5 SUV doub 370 n y N1 C1 SUV sing 371 n n N1 C16 SUV sing 372 n n C1 N2 SUV doub 373 n y C15 C16 SUV sing 374 n n C3 N2 SUV sing 375 n y C3 C4 SUV doub 376 n y C5 C4 SUV sing 377 n y C5 CL1 SUV sing 378 n n C4 H1 SUV sing 379 n n C6 H2 SUV sing 380 n n C7 H3 SUV sing 381 n n C11 H4 SUV sing 382 n n C11 H5 SUV sing 383 n n C12 H6 SUV sing 384 n n C12 H7 SUV sing 385 n n C14 H8 SUV sing 386 n n C15 H9 SUV sing 387 n n C15 H10 SUV sing 388 n n C16 H11 SUV sing 389 n n C16 H12 SUV sing 390 n n C21 H13 SUV sing 391 n n C22 H14 SUV sing 392 n n C24 H15 SUV sing 393 n n C27 H16 SUV sing 394 n n C28 H17 SUV sing 395 n n C29 H18 SUV sing 396 n n C29 H19 SUV sing 397 n n C29 H20 SUV sing 398 n n C30 H21 SUV sing 399 n n C30 H22 SUV sing 400 n n C30 H23 SUV sing 401 n n # _atom_sites.entry_id 4ZJ8 _atom_sites.fract_transf_matrix[1][1] 0.015812 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015387 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00551 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SUV A 1 2001 2001 SUV SUV . C 3 OLA A 1 2002 3001 OLA OLA . D 3 OLA A 1 2003 3002 OLA OLA . E 3 OLA A 1 2004 3003 OLA OLA . F 3 OLA A 1 2005 3004 OLA OLA . G 3 OLA A 1 2006 3005 OLA OLA . H 3 OLA A 1 2007 3006 OLA OLA . I 4 HOH A 1 2101 4013 HOH HOH . I 4 HOH A 2 2102 4009 HOH HOH . I 4 HOH A 3 2103 4002 HOH HOH . I 4 HOH A 4 2104 4003 HOH HOH . I 4 HOH A 5 2105 4012 HOH HOH . I 4 HOH A 6 2106 4004 HOH HOH . I 4 HOH A 7 2107 4011 HOH HOH . I 4 HOH A 8 2108 4008 HOH HOH . I 4 HOH A 9 2109 4006 HOH HOH . I 4 HOH A 10 2110 4005 HOH HOH . I 4 HOH A 11 2111 4007 HOH HOH . I 4 HOH A 12 2112 4016 HOH HOH . I 4 HOH A 13 2113 4018 HOH HOH . I 4 HOH A 14 2114 4001 HOH HOH . I 4 HOH A 15 2115 4017 HOH HOH . I 4 HOH A 16 2116 4014 HOH HOH . I 4 HOH A 17 2117 4015 HOH HOH . I 4 HOH A 18 2118 4010 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SUV . . . B 2 -8.067 -1.538 -55.027 1 33.62 ? C1 SUV 2001 A 1 HETATM 2 N N1 SUV . . . B 2 -9.182 -0.881 -54.761 1 36.05 ? N1 SUV 2001 A 1 HETATM 3 O O1 SUV . . . B 2 -7.428 -2.06 -53.948 1 32.52 ? O1 SUV 2001 A 1 HETATM 4 CL CL1 SUV . . . B 2 -3.028 -4.353 -56.97 1 48.82 ? CL1 SUV 2001 A 1 HETATM 5 N N2 SUV . . . B 2 -7.501 -1.752 -56.177 1 32.61 ? N2 SUV 2001 A 1 HETATM 6 O O2 SUV . . . B 2 -7.773 3.002 -55.076 1 38.74 ? O2 SUV 2001 A 1 HETATM 7 C C3 SUV . . . B 2 -6.362 -2.494 -55.853 1 32.8 ? C3 SUV 2001 A 1 HETATM 8 N N3 SUV . . . B 2 -9.087 1.618 -53.907 1 39.78 ? N3 SUV 2001 A 1 HETATM 9 C C4 SUV . . . B 2 -5.347 -3.015 -56.646 1 33.51 ? C4 SUV 2001 A 1 HETATM 10 N N4 SUV . . . B 2 -7.489 2.786 -51.27 1 39.31 ? N4 SUV 2001 A 1 HETATM 11 C C5 SUV . . . B 2 -4.328 -3.705 -56.009 1 33.7 ? C5 SUV 2001 A 1 HETATM 12 N N5 SUV . . . B 2 -7.964 2.338 -50.104 1 40.22 ? N5 SUV 2001 A 1 HETATM 13 C C6 SUV . . . B 2 -4.301 -3.889 -54.631 1 33.35 ? C6 SUV 2001 A 1 HETATM 14 N N6 SUV . . . B 2 -8.002 3.951 -51.684 1 40.76 ? N6 SUV 2001 A 1 HETATM 15 C C7 SUV . . . B 2 -5.32 -3.366 -53.85 1 32.63 ? C7 SUV 2001 A 1 HETATM 16 C C8 SUV . . . B 2 -6.326 -2.677 -54.492 1 31.76 ? C8 SUV 2001 A 1 HETATM 17 C C11 SUV . . . B 2 -9.657 -0.718 -53.382 1 37.48 ? C11 SUV 2001 A 1 HETATM 18 C C12 SUV . . . B 2 -9.321 0.627 -52.853 1 37.68 ? C12 SUV 2001 A 1 HETATM 19 C C14 SUV . . . B 2 -10.246 2.003 -54.739 1 44.69 ? C14 SUV 2001 A 1 HETATM 20 C C15 SUV . . . B 2 -10.96 0.795 -55.329 1 41.53 ? C15 SUV 2001 A 1 HETATM 21 C C16 SUV . . . B 2 -9.996 -0.281 -55.825 1 38.25 ? C16 SUV 2001 A 1 HETATM 22 C C17 SUV . . . B 2 -7.893 2.178 -54.188 1 38.43 ? C17 SUV 2001 A 1 HETATM 23 C C19 SUV . . . B 2 -6.695 1.763 -53.38 1 36.44 ? C19 SUV 2001 A 1 HETATM 24 C C20 SUV . . . B 2 -6.508 2.075 -52.025 1 37.17 ? C20 SUV 2001 A 1 HETATM 25 C C21 SUV . . . B 2 -5.344 1.676 -51.379 1 34.59 ? C21 SUV 2001 A 1 HETATM 26 C C22 SUV . . . B 2 -4.378 0.972 -52.073 1 34.79 ? C22 SUV 2001 A 1 HETATM 27 C C23 SUV . . . B 2 -4.538 0.646 -53.41 1 35.44 ? C23 SUV 2001 A 1 HETATM 28 C C24 SUV . . . B 2 -5.701 1.047 -54.048 1 36.41 ? C24 SUV 2001 A 1 HETATM 29 C C27 SUV . . . B 2 -8.843 3.254 -49.72 1 41.06 ? C27 SUV 2001 A 1 HETATM 30 C C28 SUV . . . B 2 -8.867 4.295 -50.74 1 41.49 ? C28 SUV 2001 A 1 HETATM 31 C C29 SUV . . . B 2 -3.475 -0.127 -54.153 1 36.87 ? C29 SUV 2001 A 1 HETATM 32 C C30 SUV . . . B 2 -11.208 2.902 -53.983 1 53.89 ? C30 SUV 2001 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #