data_4ZJB # _model_server_result.job_id bVfJG6gUqHDIV1XInLL6fQ _model_server_result.datetime_utc '2024-10-10 05:17:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zjb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 4ZJB # _exptl.entry_id 4ZJB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZJB _cell.length_a 127.705 _cell.length_b 127.705 _cell.length_c 127.705 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZJB _symmetry.cell_setting ? _symmetry.Int_Tables_number 195 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 44 _struct_conn.ptnr1_auth_asym_id G _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 36 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id P24 _struct_conn.ptnr2_label_comp_id PNS _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id G _struct_conn.ptnr2_auth_comp_id PNS _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.594 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 4ZJB _atom_sites.fract_transf_matrix[1][1] 0.007831 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007831 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007831 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 CIT B 1 501 501 CIT CIT . E 4 PNS G 1 401 401 PNS PSR . F 5 HOH A 1 201 11 HOH HOH . F 5 HOH A 2 202 41 HOH HOH . F 5 HOH A 3 203 38 HOH HOH . F 5 HOH A 4 204 56 HOH HOH . F 5 HOH A 5 205 18 HOH HOH . F 5 HOH A 6 206 29 HOH HOH . F 5 HOH A 7 207 16 HOH HOH . F 5 HOH A 8 208 23 HOH HOH . F 5 HOH A 9 209 15 HOH HOH . F 5 HOH A 10 210 5 HOH HOH . F 5 HOH A 11 211 19 HOH HOH . F 5 HOH A 12 212 12 HOH HOH . F 5 HOH A 13 213 4 HOH HOH . F 5 HOH A 14 214 40 HOH HOH . F 5 HOH A 15 215 20 HOH HOH . F 5 HOH A 16 216 31 HOH HOH . F 5 HOH A 17 217 17 HOH HOH . F 5 HOH A 18 218 27 HOH HOH . F 5 HOH A 19 219 60 HOH HOH . F 5 HOH A 20 220 10 HOH HOH . F 5 HOH A 21 221 21 HOH HOH . F 5 HOH A 22 222 8 HOH HOH . F 5 HOH A 23 223 2 HOH HOH . F 5 HOH A 24 224 28 HOH HOH . F 5 HOH A 25 225 71 HOH HOH . F 5 HOH A 26 226 39 HOH HOH . F 5 HOH A 27 227 61 HOH HOH . F 5 HOH A 28 228 35 HOH HOH . F 5 HOH A 29 229 59 HOH HOH . F 5 HOH A 30 230 64 HOH HOH . F 5 HOH A 31 231 42 HOH HOH . F 5 HOH A 32 232 65 HOH HOH . F 5 HOH A 33 233 25 HOH HOH . F 5 HOH A 34 234 72 HOH HOH . G 5 HOH B 1 601 6 HOH HOH . G 5 HOH B 2 602 36 HOH HOH . G 5 HOH B 3 603 33 HOH HOH . G 5 HOH B 4 604 51 HOH HOH . G 5 HOH B 5 605 57 HOH HOH . G 5 HOH B 6 606 22 HOH HOH . G 5 HOH B 7 607 1 HOH HOH . G 5 HOH B 8 608 63 HOH HOH . G 5 HOH B 9 609 3 HOH HOH . G 5 HOH B 10 610 47 HOH HOH . G 5 HOH B 11 611 46 HOH HOH . G 5 HOH B 12 612 43 HOH HOH . G 5 HOH B 13 613 50 HOH HOH . G 5 HOH B 14 614 52 HOH HOH . G 5 HOH B 15 615 66 HOH HOH . G 5 HOH B 16 616 58 HOH HOH . G 5 HOH B 17 617 14 HOH HOH . G 5 HOH B 18 618 24 HOH HOH . G 5 HOH B 19 619 9 HOH HOH . G 5 HOH B 20 620 54 HOH HOH . G 5 HOH B 21 621 7 HOH HOH . G 5 HOH B 22 622 26 HOH HOH . G 5 HOH B 23 623 34 HOH HOH . G 5 HOH B 24 624 49 HOH HOH . G 5 HOH B 25 625 13 HOH HOH . G 5 HOH B 26 626 32 HOH HOH . G 5 HOH B 27 627 44 HOH HOH . G 5 HOH B 28 628 55 HOH HOH . G 5 HOH B 29 629 48 HOH HOH . G 5 HOH B 30 630 53 HOH HOH . G 5 HOH B 31 631 45 HOH HOH . G 5 HOH B 32 632 37 HOH HOH . G 5 HOH B 33 633 30 HOH HOH . G 5 HOH B 34 634 62 HOH HOH . G 5 HOH B 35 635 68 HOH HOH . G 5 HOH B 36 636 70 HOH HOH . G 5 HOH B 37 637 67 HOH HOH . G 5 HOH B 38 638 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . D 3 -43.997 -36.74 -29.741 1 68.7 ? C1 CIT 501 B 1 HETATM 2 O O1 CIT . . . D 3 -43.971 -36.658 -30.996 1 73.98 ? O1 CIT 501 B 1 HETATM 3 O O2 CIT . . . D 3 -44.844 -36.063 -29.109 1 60.99 ? O2 CIT 501 B 1 HETATM 4 C C2 CIT . . . D 3 -42.982 -37.628 -29.044 1 69.64 ? C2 CIT 501 B 1 HETATM 5 C C3 CIT . . . D 3 -43.196 -39.044 -29.545 1 72.14 ? C3 CIT 501 B 1 HETATM 6 O O7 CIT . . . D 3 -43.88 -38.914 -30.813 1 70.74 ? O7 CIT 501 B 1 HETATM 7 C C4 CIT . . . D 3 -41.907 -39.875 -29.744 1 60.14 ? C4 CIT 501 B 1 HETATM 8 C C5 CIT . . . D 3 -41.928 -41.127 -28.867 1 71.78 ? C5 CIT 501 B 1 HETATM 9 O O3 CIT . . . D 3 -41.879 -42.339 -29.289 1 57.7 ? O3 CIT 501 B 1 HETATM 10 O O4 CIT . . . D 3 -41.982 -40.928 -27.628 1 79.45 ? O4 CIT 501 B 1 HETATM 11 C C6 CIT . . . D 3 -44.116 -39.622 -28.487 1 66.27 ? C6 CIT 501 B 1 HETATM 12 O O5 CIT . . . D 3 -44.733 -40.686 -28.683 1 68.44 ? O5 CIT 501 B 1 HETATM 13 O O6 CIT . . . D 3 -44.236 -39.019 -27.403 1 64.5 ? O6 CIT 501 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 13 #