data_4ZJC # _model_server_result.job_id MEmR1LIuaryRgIsEUYtZyw _model_server_result.datetime_utc '2024-11-14 16:55:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zjc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 4ZJC # _exptl.entry_id 4ZJC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 448.513 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[5-(2-fluorophenyl)-2-methyl-1,3-thiazol-4-yl]{(2S)-2-[(5-phenyl-1,3,4-oxadiazol-2-yl)methyl]pyrrolidin-1-yl}methanone' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZJC _cell.length_a 63.431 _cell.length_b 66.466 _cell.length_c 182.129 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZJC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 127 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 119 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 210 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 202 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.033 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H21 F N4 O2 S' _chem_comp.formula_weight 448.513 _chem_comp.id 4OT _chem_comp.mon_nstd_flag . _chem_comp.name '[5-(2-fluorophenyl)-2-methyl-1,3-thiazol-4-yl]{(2S)-2-[(5-phenyl-1,3,4-oxadiazol-2-yl)methyl]pyrrolidin-1-yl}methanone' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C45 C44 4OT doub 1 n y C45 C46 4OT sing 2 n y C44 C7 4OT sing 3 n y N4 N3 4OT sing 4 n y N4 C5 4OT doub 5 n y N3 C2 4OT doub 6 n y O23 C11 4OT doub 7 n n C46 C47 4OT doub 8 n y C7 C5 4OT sing 9 n n C7 C48 4OT doub 10 n y C5 O6 4OT sing 11 n y C13 N12 4OT sing 12 n n C13 C14 4OT sing 13 n n N27 C12 4OT sing 14 n y N27 C26 4OT doub 15 n y C11 N12 4OT sing 16 n n C11 C12 4OT sing 17 n n C2 O6 4OT sing 18 n y C2 C1 4OT sing 19 n n C25 C26 4OT sing 20 n n C47 C48 4OT sing 21 n y N12 C8 4OT sing 22 n n C12 C28 4OT doub 23 n y C26 S29 4OT sing 24 n y C14 C24 4OT sing 25 n n C1 C8 4OT sing 26 n n C8 C24 4OT sing 27 n n C28 S29 4OT sing 28 n y C28 C30 4OT sing 29 n n C34 C30 4OT doub 30 n y C34 C35 4OT sing 31 n y C30 C38 4OT sing 32 n y C35 C36 4OT doub 33 n y C38 F39 4OT sing 34 n n C38 C37 4OT doub 35 n y C36 C37 4OT sing 36 n y C1 H1 4OT sing 37 n n C1 H2 4OT sing 38 n n C8 H3 4OT sing 39 n n C13 H4 4OT sing 40 n n C13 H5 4OT sing 41 n n C14 H6 4OT sing 42 n n C14 H7 4OT sing 43 n n C24 H8 4OT sing 44 n n C24 H9 4OT sing 45 n n C25 H10 4OT sing 46 n n C25 H11 4OT sing 47 n n C25 H12 4OT sing 48 n n C34 H13 4OT sing 49 n n C35 H14 4OT sing 50 n n C36 H15 4OT sing 51 n n C37 H16 4OT sing 52 n n C44 H17 4OT sing 53 n n C45 H18 4OT sing 54 n n C46 H19 4OT sing 55 n n C47 H20 4OT sing 56 n n C48 H21 4OT sing 57 n n # _atom_sites.entry_id 4ZJC _atom_sites.fract_transf_matrix[1][1] 0.015765 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015045 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005491 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4OT A 1 2001 2001 4OT SBJ . C 3 OLA A 1 2002 3001 OLA OLA . D 3 OLA A 1 2003 3002 OLA OLA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4OT . . . B 2 -9.883 -1.056 -53.995 1 40.4 ? C1 4OT 2001 A 1 HETATM 2 C C2 4OT . . . B 2 -8.927 -1.398 -55.079 1 42.36 ? C2 4OT 2001 A 1 HETATM 3 N N3 4OT . . . B 2 -8.95 -1.159 -56.339 1 40.06 ? N3 4OT 2001 A 1 HETATM 4 N N4 4OT . . . B 2 -7.785 -1.729 -56.871 1 39.96 ? N4 4OT 2001 A 1 HETATM 5 C C5 4OT . . . B 2 -7.157 -2.265 -55.881 1 38.28 ? C5 4OT 2001 A 1 HETATM 6 O O6 4OT . . . B 2 -7.818 -2.1 -54.7 1 44.21 ? O6 4OT 2001 A 1 HETATM 7 C C7 4OT . . . B 2 -5.882 -2.982 -55.883 1 32.53 ? C7 4OT 2001 A 1 HETATM 8 C C8 4OT . . . B 2 -9.692 0.378 -53.498 1 40.69 ? C8 4OT 2001 A 1 HETATM 9 C C11 4OT . . . B 2 -8.512 1.823 -55.118 1 37.64 ? C11 4OT 2001 A 1 HETATM 10 C C12 4OT . . . B 2 -7.198 1.456 -54.509 1 45.56 ? C12 4OT 2001 A 1 HETATM 11 N N12 4OT . . . B 2 -9.655 1.334 -54.611 1 39.48 ? N12 4OT 2001 A 1 HETATM 12 C C13 4OT . . . B 2 -11.015 1.73 -54.993 1 43.91 ? C13 4OT 2001 A 1 HETATM 13 C C14 4OT . . . B 2 -11.785 1.628 -53.679 1 42.99 ? C14 4OT 2001 A 1 HETATM 14 O O23 4OT . . . B 2 -8.508 2.571 -56.089 1 35.69 ? O23 4OT 2001 A 1 HETATM 15 C C24 4OT . . . B 2 -10.865 0.899 -52.667 1 42.98 ? C24 4OT 2001 A 1 HETATM 16 C C25 4OT . . . B 2 -3.983 -0.227 -54.884 1 42.4 ? C25 4OT 2001 A 1 HETATM 17 C C26 4OT . . . B 2 -5.178 0.553 -54.443 1 45.18 ? C26 4OT 2001 A 1 HETATM 18 N N27 4OT . . . B 2 -6.263 0.669 -55.156 1 45.9 ? N27 4OT 2001 A 1 HETATM 19 C C28 4OT . . . B 2 -6.826 1.945 -53.28 1 53.7 ? C28 4OT 2001 A 1 HETATM 20 S S29 4OT . . . B 2 -5.217 1.394 -52.92 1 44.45 ? S29 4OT 2001 A 1 HETATM 21 C C30 4OT . . . B 2 -7.538 2.793 -52.301 1 57.55 ? C30 4OT 2001 A 1 HETATM 22 C C34 4OT . . . B 2 -8.116 3.988 -52.731 1 58.46 ? C34 4OT 2001 A 1 HETATM 23 C C35 4OT . . . B 2 -8.79 4.809 -51.845 1 59.61 ? C35 4OT 2001 A 1 HETATM 24 C C36 4OT . . . B 2 -8.902 4.456 -50.519 1 58.06 ? C36 4OT 2001 A 1 HETATM 25 C C37 4OT . . . B 2 -8.341 3.278 -50.061 1 55.57 ? C37 4OT 2001 A 1 HETATM 26 C C38 4OT . . . B 2 -7.677 2.477 -50.958 1 57.09 ? C38 4OT 2001 A 1 HETATM 27 F F39 4OT . . . B 2 -7.138 1.324 -50.502 1 60.99 ? F39 4OT 2001 A 1 HETATM 28 C C44 4OT . . . B 2 -5.168 -3.157 -57.063 1 34.98 ? C44 4OT 2001 A 1 HETATM 29 C C45 4OT . . . B 2 -3.954 -3.822 -57.056 1 33.88 ? C45 4OT 2001 A 1 HETATM 30 C C46 4OT . . . B 2 -3.442 -4.321 -55.877 1 34.53 ? C46 4OT 2001 A 1 HETATM 31 C C47 4OT . . . B 2 -4.143 -4.157 -54.701 1 34.42 ? C47 4OT 2001 A 1 HETATM 32 C C48 4OT . . . B 2 -5.357 -3.493 -54.7 1 32.29 ? C48 4OT 2001 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 32 #