data_4ZJL # _model_server_result.job_id m1Q0XJ8ocKkSu2NZvutZuw _model_server_result.datetime_utc '2024-11-21 14:15:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zjl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1101}' # _entry.id 4ZJL # _exptl.entry_id 4ZJL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 733.927 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ERYTHROMYCIN A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.67 _cell.angle_gamma 90 _cell.entry_id 4ZJL _cell.length_a 150.948 _cell.length_b 155.665 _cell.length_c 217.007 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZJL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L,M 1 1 D,E,F,N,O,P,Q,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 525 A HIS 525 1_555 J NI NI . A NI 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc2 A OD1 ASP 529 A ASP 529 1_555 J NI NI . A NI 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc3 A OD2 ASP 529 A ASP 529 1_555 J NI NI . A NI 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc4 J NI NI . A NI 1104 2_646 B NE2 HIS 525 B HIS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc5 J NI NI . A NI 1104 2_646 B OD1 ASP 529 B ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc6 J NI NI . A NI 1104 2_646 B OD2 ASP 529 B ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc7 C NE2 HIS 525 C HIS 525 1_555 M NI NI . C NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? metalc ? metalc8 C OD2 ASP 529 C ASP 529 1_555 M NI NI . C NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.703 ? metalc ? metalc9 M NI NI . C NI 1102 1_554 D ND1 HIS 525 D HIS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc10 M NI NI . C NI 1102 1_554 D OD1 ASP 529 D ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc11 M NI NI . C NI 1102 1_554 D OD2 ASP 529 D ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.778 ? metalc ? metalc12 E NE2 HIS 525 E HIS 525 1_555 R NI NI . E NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc13 E OD1 ASP 529 E ASP 529 1_555 R NI NI . E NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc14 E OD2 ASP 529 E ASP 529 1_555 R NI NI . E NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc15 R NI NI . E NI 1102 2_545 F NE2 HIS 525 F HIS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? metalc ? metalc16 R NI NI . E NI 1102 2_545 F OD1 ASP 529 F ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc17 R NI NI . E NI 1102 2_545 F OD2 ASP 529 F ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? # _chem_comp.formula 'C37 H67 N O13' _chem_comp.formula_weight 733.927 _chem_comp.id ERY _chem_comp.mon_nstd_flag . _chem_comp.name 'ERYTHROMYCIN A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C11 ERY sing 83 n n C10 C9 ERY sing 84 n n C10 C34 ERY sing 85 n n C10 H10 ERY sing 86 n n C11 C12 ERY sing 87 n n C11 O12 ERY sing 88 n n C11 H11 ERY sing 89 n n C12 C13 ERY sing 90 n n C12 C35 ERY sing 91 n n C12 O13 ERY sing 92 n n C13 O2 ERY sing 93 n n C13 C36 ERY sing 94 n n C13 H13 ERY sing 95 n n O2 C1 ERY sing 96 n n C2 C3 ERY sing 97 n n C2 C1 ERY sing 98 n n C2 C30 ERY sing 99 n n C2 H2 ERY sing 100 n n C3 C4 ERY sing 101 n n C3 O3 ERY sing 102 n n C3 H3 ERY sing 103 n n C4 C5 ERY sing 104 n n C4 C31 ERY sing 105 n n C4 H4 ERY sing 106 n n C5 C6 ERY sing 107 n n C5 O7 ERY sing 108 n n C5 H5 ERY sing 109 n n C6 C7 ERY sing 110 n n C6 C32 ERY sing 111 n n C6 O10 ERY sing 112 n n C7 C8 ERY sing 113 n n C7 H71 ERY sing 114 n n C7 H72 ERY sing 115 n n C8 C9 ERY sing 116 n n C8 C33 ERY sing 117 n n C8 H8 ERY sing 118 n n C9 O11 ERY doub 119 n n C1 O1 ERY doub 120 n n O3 C14 ERY sing 121 n n O7 C22 ERY sing 122 n n C34 H341 ERY sing 123 n n C34 H342 ERY sing 124 n n C34 H343 ERY sing 125 n n C33 H331 ERY sing 126 n n C33 H332 ERY sing 127 n n C33 H333 ERY sing 128 n n C35 H351 ERY sing 129 n n C35 H352 ERY sing 130 n n C35 H353 ERY sing 131 n n O12 HO12 ERY sing 132 n n O13 HO13 ERY sing 133 n n C36 C37 ERY sing 134 n n C36 H361 ERY sing 135 n n C36 H362 ERY sing 136 n n C30 H301 ERY sing 137 n n C30 H302 ERY sing 138 n n C30 H303 ERY sing 139 n n C32 H321 ERY sing 140 n n C32 H322 ERY sing 141 n n C32 H323 ERY sing 142 n n O10 HO10 ERY sing 143 n n C22 C23 ERY sing 144 n n C22 O9 ERY sing 145 n n C22 H22 ERY sing 146 n n C23 C24 ERY sing 147 n n C23 O8 ERY sing 148 n n C23 H23 ERY sing 149 n n C24 C25 ERY sing 150 n n C24 N1 ERY sing 151 n n C24 H24 ERY sing 152 n n C25 C26 ERY sing 153 n n C25 H251 ERY sing 154 n n C25 H252 ERY sing 155 n n C26 O9 ERY sing 156 n n C26 C27 ERY sing 157 n n C26 H26 ERY sing 158 n n N1 C28 ERY sing 159 n n N1 C29 ERY sing 160 n n C27 H271 ERY sing 161 n n C27 H272 ERY sing 162 n n C27 H273 ERY sing 163 n n O8 HO8 ERY sing 164 n n C28 H281 ERY sing 165 n n C28 H282 ERY sing 166 n n C28 H283 ERY sing 167 n n C14 C15 ERY sing 168 n n C14 O4 ERY sing 169 n n C14 H14 ERY sing 170 n n C15 C16 ERY sing 171 n n C15 H151 ERY sing 172 n n C15 H152 ERY sing 173 n n C16 C17 ERY sing 174 n n C16 O5 ERY sing 175 n n C16 C19 ERY sing 176 n n C17 C18 ERY sing 177 n n C17 O6 ERY sing 178 n n C17 H17 ERY sing 179 n n C18 O4 ERY sing 180 n n C18 C21 ERY sing 181 n n C18 H18 ERY sing 182 n n O5 C20 ERY sing 183 n n O6 HO6 ERY sing 184 n n C20 H201 ERY sing 185 n n C20 H202 ERY sing 186 n n C20 H203 ERY sing 187 n n C29 H291 ERY sing 188 n n C29 H292 ERY sing 189 n n C29 H293 ERY sing 190 n n C21 H211 ERY sing 191 n n C21 H212 ERY sing 192 n n C21 H213 ERY sing 193 n n C37 H371 ERY sing 194 n n C37 H372 ERY sing 195 n n C37 H373 ERY sing 196 n n C31 H311 ERY sing 197 n n C31 H312 ERY sing 198 n n C31 H313 ERY sing 199 n n C19 H191 ERY sing 200 n n C19 H192 ERY sing 201 n n C19 H193 ERY sing 202 n n # _atom_sites.entry_id 4ZJL _atom_sites.fract_transf_matrix[1][1] 0.006625 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000309 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006424 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004613 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ERY A 1 1101 2000 ERY ERY . H 3 LMT A 1 1102 2100 LMT DDM . I 3 LMT A 1 1103 2200 LMT DDM . J 4 NI A 1 1104 3000 NI NI . K 3 LMT B 1 1101 2100 LMT DDM . L 3 LMT C 1 1101 2100 LMT DDM . M 4 NI C 1 1102 3000 NI NI . N 2 ERY D 1 1101 2000 ERY ERY . O 3 LMT D 1 1102 2100 LMT DDM . P 3 LMT D 1 1103 2200 LMT DDM . Q 3 LMT E 1 1101 2100 LMT DDM . R 4 NI E 1 1102 3000 NI NI . S 3 LMT F 1 1101 2100 LMT DDM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 ERY . . . G 2 9.83 28.202 74.384 0.89 76.41 ? C10 ERY 1101 A 1 HETATM 2 C C11 ERY . . . G 2 11.353 28.314 74.239 0.89 73.86 ? C11 ERY 1101 A 1 HETATM 3 C C12 ERY . . . G 2 11.971 29.723 74.066 0.89 80.91 ? C12 ERY 1101 A 1 HETATM 4 C C13 ERY . . . G 2 13.098 29.804 75.13 0.89 83.02 ? C13 ERY 1101 A 1 HETATM 5 O O2 ERY . . . G 2 13.44 31.161 75.476 0.89 87.39 ? O2 ERY 1101 A 1 HETATM 6 C C2 ERY . . . G 2 12.204 32.315 77.367 0.89 81.21 ? C2 ERY 1101 A 1 HETATM 7 C C3 ERY . . . G 2 11.488 31.77 78.626 0.89 77.78 ? C3 ERY 1101 A 1 HETATM 8 C C4 ERY . . . G 2 9.989 31.52 78.402 0.89 76.85 ? C4 ERY 1101 A 1 HETATM 9 C C5 ERY . . . G 2 9.366 30.259 79.035 0.89 71.21 ? C5 ERY 1101 A 1 HETATM 10 C C6 ERY . . . G 2 9.605 28.963 78.233 0.89 75.68 ? C6 ERY 1101 A 1 HETATM 11 C C7 ERY . . . G 2 8.75 28.91 76.952 0.89 78.35 ? C7 ERY 1101 A 1 HETATM 12 C C8 ERY . . . G 2 8.453 27.487 76.442 0.89 79.89 ? C8 ERY 1101 A 1 HETATM 13 C C9 ERY . . . G 2 9.446 27.121 75.364 0.89 77.32 ? C9 ERY 1101 A 1 HETATM 14 O O11 ERY . . . G 2 9.923 25.981 75.301 0.89 78.36 ? O11 ERY 1101 A 1 HETATM 15 C C1 ERY . . . G 2 13.292 31.371 76.911 0.89 80.08 ? C1 ERY 1101 A 1 HETATM 16 O O1 ERY . . . G 2 13.568 30.399 77.605 0.89 74.02 ? O1 ERY 1101 A 1 HETATM 17 O O3 ERY . . . G 2 11.614 32.698 79.703 0.89 90.58 ? O3 ERY 1101 A 1 HETATM 18 O O7 ERY . . . G 2 7.957 30.578 79.055 0.89 81.13 ? O7 ERY 1101 A 1 HETATM 19 C C34 ERY . . . G 2 9.126 27.886 73.072 0.89 86.16 ? C34 ERY 1101 A 1 HETATM 20 C C33 ERY . . . G 2 6.99 27.482 75.968 0.89 75.27 ? C33 ERY 1101 A 1 HETATM 21 C C35 ERY . . . G 2 10.899 30.826 74.187 0.89 80.88 ? C35 ERY 1101 A 1 HETATM 22 O O12 ERY . . . G 2 11.907 27.523 73.176 0.89 77.34 ? O12 ERY 1101 A 1 HETATM 23 O O13 ERY . . . G 2 12.586 29.912 72.771 0.89 76.55 ? O13 ERY 1101 A 1 HETATM 24 C C36 ERY . . . G 2 14.387 29.006 74.796 0.89 78.22 ? C36 ERY 1101 A 1 HETATM 25 C C30 ERY . . . G 2 12.821 33.727 77.446 0.89 77.89 ? C30 ERY 1101 A 1 HETATM 26 C C32 ERY . . . G 2 9.434 27.691 79.081 0.89 76.01 ? C32 ERY 1101 A 1 HETATM 27 O O10 ERY . . . G 2 11.002 28.925 77.874 0.89 75.45 ? O10 ERY 1101 A 1 HETATM 28 C C22 ERY . . . G 2 7.015 30.047 80.027 0.89 88.13 ? C22 ERY 1101 A 1 HETATM 29 C C23 ERY . . . G 2 6.411 31.088 81.042 0.89 91.95 ? C23 ERY 1101 A 1 HETATM 30 C C24 ERY . . . G 2 5.237 30.422 81.858 0.89 90.87 ? C24 ERY 1101 A 1 HETATM 31 C C25 ERY . . . G 2 4.186 29.716 80.941 0.89 77.89 ? C25 ERY 1101 A 1 HETATM 32 C C26 ERY . . . G 2 4.955 28.71 80.054 0.89 83.21 ? C26 ERY 1101 A 1 HETATM 33 O O9 ERY . . . G 2 5.946 29.419 79.255 0.89 86.14 ? O9 ERY 1101 A 1 HETATM 34 N N1 ERY . . . G 2 4.536 31.316 82.833 0.89 95.3 ? N1 ERY 1101 A 1 HETATM 35 C C27 ERY . . . G 2 4.083 27.771 79.195 0.89 86.64 ? C27 ERY 1101 A 1 HETATM 36 O O8 ERY . . . G 2 7.403 31.722 81.901 0.89 87.89 ? O8 ERY 1101 A 1 HETATM 37 C C28 ERY . . . G 2 5.107 31.292 84.174 0.89 86.04 ? C28 ERY 1101 A 1 HETATM 38 C C14 ERY . . . G 2 12.458 32.299 80.815 0.89 77.61 ? C14 ERY 1101 A 1 HETATM 39 C C15 ERY . . . G 2 12.395 33.423 81.871 0.89 74.59 ? C15 ERY 1101 A 1 HETATM 40 C C16 ERY . . . G 2 11.458 33.179 83.064 0.89 83.4 ? C16 ERY 1101 A 1 HETATM 41 C C17 ERY . . . G 2 11.455 31.689 83.505 0.89 88.33 ? C17 ERY 1101 A 1 HETATM 42 C C18 ERY . . . G 2 11.106 30.787 82.292 0.89 79.98 ? C18 ERY 1101 A 1 HETATM 43 O O4 ERY . . . G 2 12.162 30.95 81.299 0.89 81.01 ? O4 ERY 1101 A 1 HETATM 44 O O5 ERY . . . G 2 10.052 33.534 82.808 0.89 82.13 ? O5 ERY 1101 A 1 HETATM 45 O O6 ERY . . . G 2 10.602 31.384 84.655 0.89 89.85 ? O6 ERY 1101 A 1 HETATM 46 C C20 ERY . . . G 2 9.486 34.71 82.181 0.89 79.56 ? C20 ERY 1101 A 1 HETATM 47 C C29 ERY . . . G 2 3.076 31.542 82.803 0.89 80.69 ? C29 ERY 1101 A 1 HETATM 48 C C21 ERY . . . G 2 10.864 29.305 82.639 0.89 75.66 ? C21 ERY 1101 A 1 HETATM 49 C C37 ERY . . . G 2 15.67 29.679 75.269 0.89 70.37 ? C37 ERY 1101 A 1 HETATM 50 C C31 ERY . . . G 2 9.253 32.76 78.927 0.89 78.01 ? C31 ERY 1101 A 1 HETATM 51 C C19 ERY . . . G 2 12.056 34.056 84.152 0.89 86.15 ? C19 ERY 1101 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 91 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 51 #