data_4ZJL # _model_server_result.job_id mpfbRTwDyuTX0IsM_t6xPA _model_server_result.datetime_utc '2024-11-21 14:30:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zjl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1102}' # _entry.id 4ZJL # _exptl.entry_id 4ZJL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.67 _cell.angle_gamma 90 _cell.entry_id 4ZJL _cell.length_a 150.948 _cell.length_b 155.665 _cell.length_c 217.007 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZJL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L,M 1 1 D,E,F,N,O,P,Q,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N ? 3 K N N ? 3 L N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 525 A HIS 525 1_555 J NI NI . A NI 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc2 A OD1 ASP 529 A ASP 529 1_555 J NI NI . A NI 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc3 A OD2 ASP 529 A ASP 529 1_555 J NI NI . A NI 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc4 J NI NI . A NI 1104 2_646 B NE2 HIS 525 B HIS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc5 J NI NI . A NI 1104 2_646 B OD1 ASP 529 B ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc6 J NI NI . A NI 1104 2_646 B OD2 ASP 529 B ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc7 C NE2 HIS 525 C HIS 525 1_555 M NI NI . C NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? metalc ? metalc8 C OD2 ASP 529 C ASP 529 1_555 M NI NI . C NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.703 ? metalc ? metalc9 M NI NI . C NI 1102 1_554 D ND1 HIS 525 D HIS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc10 M NI NI . C NI 1102 1_554 D OD1 ASP 529 D ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc11 M NI NI . C NI 1102 1_554 D OD2 ASP 529 D ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.778 ? metalc ? metalc12 E NE2 HIS 525 E HIS 525 1_555 R NI NI . E NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc13 E OD1 ASP 529 E ASP 529 1_555 R NI NI . E NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc14 E OD2 ASP 529 E ASP 529 1_555 R NI NI . E NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc15 R NI NI . E NI 1102 2_545 F NE2 HIS 525 F HIS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? metalc ? metalc16 R NI NI . E NI 1102 2_545 F OD1 ASP 529 F ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc17 R NI NI . E NI 1102 2_545 F OD2 ASP 529 F ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 312 n n C1B O1B LMT sing 313 n n C1B O5B LMT sing 314 n n C1B H1B LMT sing 315 n n C2B C3B LMT sing 316 n n C2B O2B LMT sing 317 n n C2B H2B LMT sing 318 n n C3B C4B LMT sing 319 n n C3B O3B LMT sing 320 n n C3B H3B LMT sing 321 n n C4B C5B LMT sing 322 n n C4B O4' LMT sing 323 n n C4B H4B LMT sing 324 n n C5B C6B LMT sing 325 n n C5B O5B LMT sing 326 n n C5B H5B LMT sing 327 n n C6B O6B LMT sing 328 n n C6B "H6'2" LMT sing 329 n n C6B "H6'1" LMT sing 330 n n O1B C4' LMT sing 331 n n O2B H2O1 LMT sing 332 n n O3B H3O1 LMT sing 333 n n O4' H4O1 LMT sing 334 n n O6B H6B LMT sing 335 n n C1' C2' LMT sing 336 n n C1' O1' LMT sing 337 n n C1' O5' LMT sing 338 n n C1' H1' LMT sing 339 n n C2' C3' LMT sing 340 n n C2' O2' LMT sing 341 n n C2' H2' LMT sing 342 n n C3' C4' LMT sing 343 n n C3' O3' LMT sing 344 n n C3' H3' LMT sing 345 n n C4' C5' LMT sing 346 n n C4' H4' LMT sing 347 n n C5' C6' LMT sing 348 n n C5' O5' LMT sing 349 n n C5' H5' LMT sing 350 n n C6' O6' LMT sing 351 n n C6' H6D LMT sing 352 n n C6' H6E LMT sing 353 n n O1' C1 LMT sing 354 n n O2' H2O2 LMT sing 355 n n O3' H3O2 LMT sing 356 n n O6' H6' LMT sing 357 n n C1 C2 LMT sing 358 n n C1 H12 LMT sing 359 n n C1 H11 LMT sing 360 n n C2 C3 LMT sing 361 n n C2 H22 LMT sing 362 n n C2 H21 LMT sing 363 n n C3 C4 LMT sing 364 n n C3 H32 LMT sing 365 n n C3 H31 LMT sing 366 n n C4 C5 LMT sing 367 n n C4 H42 LMT sing 368 n n C4 H41 LMT sing 369 n n C5 C6 LMT sing 370 n n C5 H52 LMT sing 371 n n C5 H51 LMT sing 372 n n C6 C7 LMT sing 373 n n C6 H62 LMT sing 374 n n C6 H61 LMT sing 375 n n C7 C8 LMT sing 376 n n C7 H72 LMT sing 377 n n C7 H71 LMT sing 378 n n C8 C9 LMT sing 379 n n C8 H82 LMT sing 380 n n C8 H81 LMT sing 381 n n C9 C10 LMT sing 382 n n C9 H92 LMT sing 383 n n C9 H91 LMT sing 384 n n C10 C11 LMT sing 385 n n C10 H102 LMT sing 386 n n C10 H101 LMT sing 387 n n C11 C12 LMT sing 388 n n C11 H112 LMT sing 389 n n C11 H111 LMT sing 390 n n C12 H123 LMT sing 391 n n C12 H122 LMT sing 392 n n C12 H121 LMT sing 393 n n # _atom_sites.entry_id 4ZJL _atom_sites.fract_transf_matrix[1][1] 0.006625 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000309 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006424 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004613 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ERY A 1 1101 2000 ERY ERY . H 3 LMT A 1 1102 2100 LMT DDM . I 3 LMT A 1 1103 2200 LMT DDM . J 4 NI A 1 1104 3000 NI NI . K 3 LMT B 1 1101 2100 LMT DDM . L 3 LMT C 1 1101 2100 LMT DDM . M 4 NI C 1 1102 3000 NI NI . N 2 ERY D 1 1101 2000 ERY ERY . O 3 LMT D 1 1102 2100 LMT DDM . P 3 LMT D 1 1103 2200 LMT DDM . Q 3 LMT E 1 1101 2100 LMT DDM . R 4 NI E 1 1102 3000 NI NI . S 3 LMT F 1 1101 2100 LMT DDM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . H 3 60.592 55.659 112.073 1 83.17 ? C1B LMT 1102 A 1 HETATM 2 C C2B LMT . . . H 3 61.83 55.398 112.948 1 87.4 ? C2B LMT 1102 A 1 HETATM 3 C C3B LMT . . . H 3 61.458 55.097 114.338 1 87.53 ? C3B LMT 1102 A 1 HETATM 4 C C4B LMT . . . H 3 60.673 56.232 114.936 1 85.79 ? C4B LMT 1102 A 1 HETATM 5 C C5B LMT . . . H 3 59.44 56.564 114.084 1 82.82 ? C5B LMT 1102 A 1 HETATM 6 C C6B LMT . . . H 3 58.824 57.799 114.608 1 80.14 ? C6B LMT 1102 A 1 HETATM 7 O O1B LMT . . . H 3 59.828 54.533 111.873 1 78.71 ? O1B LMT 1102 A 1 HETATM 8 O O2B LMT . . . H 3 62.718 54.355 112.426 1 83.92 ? O2B LMT 1102 A 1 HETATM 9 O O3B LMT . . . H 3 62.691 54.862 115.145 1 85.32 ? O3B LMT 1102 A 1 HETATM 10 O O4' LMT . . . H 3 60.328 55.923 116.315 1 75.51 ? O4' LMT 1102 A 1 HETATM 11 O O5B LMT . . . H 3 59.736 56.754 112.659 1 77.2 ? O5B LMT 1102 A 1 HETATM 12 O O6B LMT . . . H 3 57.694 58.118 113.806 1 86.94 ? O6B LMT 1102 A 1 HETATM 13 C C1' LMT . . . H 3 57.994 52.725 108.565 1 83.02 ? C1' LMT 1102 A 1 HETATM 14 C C2' LMT . . . H 3 59.475 52.729 108.669 1 84.62 ? C2' LMT 1102 A 1 HETATM 15 C C3' LMT . . . H 3 60.124 53.475 109.761 1 83.1 ? C3' LMT 1102 A 1 HETATM 16 C C4' LMT . . . H 3 59.333 54.482 110.549 1 83.13 ? C4' LMT 1102 A 1 HETATM 17 C C5' LMT . . . H 3 57.807 54.188 110.581 1 88.12 ? C5' LMT 1102 A 1 HETATM 18 C C6' LMT . . . H 3 57.109 55.263 111.175 1 89.21 ? C6' LMT 1102 A 1 HETATM 19 O O1' LMT . . . H 3 57.547 52.547 107.188 1 85.04 ? O1' LMT 1102 A 1 HETATM 20 O O2' LMT . . . H 3 59.905 51.323 108.848 1 80.38 ? O2' LMT 1102 A 1 HETATM 21 O O3' LMT . . . H 3 61.281 54.172 109.177 1 85.86 ? O3' LMT 1102 A 1 HETATM 22 O O5' LMT . . . H 3 57.348 53.936 109.139 1 84.24 ? O5' LMT 1102 A 1 HETATM 23 O O6' LMT . . . H 3 55.704 55.085 111.053 1 87.17 ? O6' LMT 1102 A 1 HETATM 24 C C1 LMT . . . H 3 56.609 51.459 106.976 1 80.43 ? C1 LMT 1102 A 1 HETATM 25 C C2 LMT . . . H 3 55.625 51.883 105.821 1 89.7 ? C2 LMT 1102 A 1 HETATM 26 C C3 LMT . . . H 3 55.421 50.844 104.677 1 94.03 ? C3 LMT 1102 A 1 HETATM 27 C C4 LMT . . . H 3 54.149 51.024 103.839 1 91.23 ? C4 LMT 1102 A 1 HETATM 28 C C5 LMT . . . H 3 54.269 50.431 102.331 1 83.45 ? C5 LMT 1102 A 1 HETATM 29 C C6 LMT . . . H 3 55.462 50.975 101.562 1 78.47 ? C6 LMT 1102 A 1 HETATM 30 C C7 LMT . . . H 3 55.973 50.073 100.382 1 65.98 ? C7 LMT 1102 A 1 HETATM 31 C C8 LMT . . . H 3 55.884 48.502 100.67 1 63.01 ? C8 LMT 1102 A 1 HETATM 32 C C9 LMT . . . H 3 56.398 47.606 99.533 1 55.25 ? C9 LMT 1102 A 1 HETATM 33 C C10 LMT . . . H 3 56.339 46.099 99.905 1 44.13 ? C10 LMT 1102 A 1 HETATM 34 C C11 LMT . . . H 3 56.211 45.095 98.696 1 38.27 ? C11 LMT 1102 A 1 HETATM 35 C C12 LMT . . . H 3 55.979 43.656 99.155 1 28.84 ? C12 LMT 1102 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 283 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #