data_4ZJO # _model_server_result.job_id YjuBZ379NjRMHqza5BdM4A _model_server_result.datetime_utc '2024-11-23 21:55:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zjo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":1101}' # _entry.id 4ZJO # _exptl.entry_id 4ZJO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.09 _cell.angle_gamma 90 _cell.entry_id 4ZJO _cell.length_a 151.184 _cell.length_b 156.769 _cell.length_c 218.168 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZJO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L,M 1 1 D,E,F,N,O,P,Q,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N ? 3 K N N ? 3 L N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 525 A HIS 525 1_555 J NI NI . A NI 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc2 A OD1 ASP 529 A ASP 529 1_555 J NI NI . A NI 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc3 A OD2 ASP 529 A ASP 529 1_555 J NI NI . A NI 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc4 J NI NI . A NI 1104 2_646 B NE2 HIS 525 B HIS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc5 J NI NI . A NI 1104 2_646 B OD1 ASP 529 B ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc6 J NI NI . A NI 1104 2_646 B OD2 ASP 529 B ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc7 C NE2 HIS 525 C HIS 525 1_555 M NI NI . C NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? metalc ? metalc8 C OD1 ASP 529 C ASP 529 1_555 M NI NI . C NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc9 C OD2 ASP 529 C ASP 529 1_555 M NI NI . C NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.749 ? metalc ? metalc10 M NI NI . C NI 1102 1_554 D NE2 HIS 525 D HIS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.774 ? metalc ? metalc11 M NI NI . C NI 1102 1_554 D OD1 ASP 529 D ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc12 M NI NI . C NI 1102 1_554 D OD2 ASP 529 D ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? metalc ? metalc13 E NE2 HIS 525 E HIS 525 1_555 R NI NI . E NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc14 E OD1 ASP 529 E ASP 529 1_555 R NI NI . E NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc15 E OD2 ASP 529 E ASP 529 1_555 R NI NI . E NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc16 R NI NI . E NI 1102 2_545 F NE2 HIS 525 F HIS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc17 R NI NI . E NI 1102 2_545 F OD1 ASP 529 F ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc18 R NI NI . E NI 1102 2_545 F OD2 ASP 529 F ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.803 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 312 n n C1B O1B LMT sing 313 n n C1B O5B LMT sing 314 n n C1B H1B LMT sing 315 n n C2B C3B LMT sing 316 n n C2B O2B LMT sing 317 n n C2B H2B LMT sing 318 n n C3B C4B LMT sing 319 n n C3B O3B LMT sing 320 n n C3B H3B LMT sing 321 n n C4B C5B LMT sing 322 n n C4B O4' LMT sing 323 n n C4B H4B LMT sing 324 n n C5B C6B LMT sing 325 n n C5B O5B LMT sing 326 n n C5B H5B LMT sing 327 n n C6B O6B LMT sing 328 n n C6B "H6'2" LMT sing 329 n n C6B "H6'1" LMT sing 330 n n O1B C4' LMT sing 331 n n O2B H2O1 LMT sing 332 n n O3B H3O1 LMT sing 333 n n O4' H4O1 LMT sing 334 n n O6B H6B LMT sing 335 n n C1' C2' LMT sing 336 n n C1' O1' LMT sing 337 n n C1' O5' LMT sing 338 n n C1' H1' LMT sing 339 n n C2' C3' LMT sing 340 n n C2' O2' LMT sing 341 n n C2' H2' LMT sing 342 n n C3' C4' LMT sing 343 n n C3' O3' LMT sing 344 n n C3' H3' LMT sing 345 n n C4' C5' LMT sing 346 n n C4' H4' LMT sing 347 n n C5' C6' LMT sing 348 n n C5' O5' LMT sing 349 n n C5' H5' LMT sing 350 n n C6' O6' LMT sing 351 n n C6' H6D LMT sing 352 n n C6' H6E LMT sing 353 n n O1' C1 LMT sing 354 n n O2' H2O2 LMT sing 355 n n O3' H3O2 LMT sing 356 n n O6' H6' LMT sing 357 n n C1 C2 LMT sing 358 n n C1 H12 LMT sing 359 n n C1 H11 LMT sing 360 n n C2 C3 LMT sing 361 n n C2 H22 LMT sing 362 n n C2 H21 LMT sing 363 n n C3 C4 LMT sing 364 n n C3 H32 LMT sing 365 n n C3 H31 LMT sing 366 n n C4 C5 LMT sing 367 n n C4 H42 LMT sing 368 n n C4 H41 LMT sing 369 n n C5 C6 LMT sing 370 n n C5 H52 LMT sing 371 n n C5 H51 LMT sing 372 n n C6 C7 LMT sing 373 n n C6 H62 LMT sing 374 n n C6 H61 LMT sing 375 n n C7 C8 LMT sing 376 n n C7 H72 LMT sing 377 n n C7 H71 LMT sing 378 n n C8 C9 LMT sing 379 n n C8 H82 LMT sing 380 n n C8 H81 LMT sing 381 n n C9 C10 LMT sing 382 n n C9 H92 LMT sing 383 n n C9 H91 LMT sing 384 n n C10 C11 LMT sing 385 n n C10 H102 LMT sing 386 n n C10 H101 LMT sing 387 n n C11 C12 LMT sing 388 n n C11 H112 LMT sing 389 n n C11 H111 LMT sing 390 n n C12 H123 LMT sing 391 n n C12 H122 LMT sing 392 n n C12 H121 LMT sing 393 n n # _atom_sites.entry_id 4ZJO _atom_sites.fract_transf_matrix[1][1] 0.006614 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000357 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006379 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00459 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ERY A 1 1101 2000 ERY ERY . H 3 LMT A 1 1102 2100 LMT DDM . I 3 LMT A 1 1103 2200 LMT DDM . J 4 NI A 1 1104 3000 NI NI . K 3 LMT B 1 1101 2100 LMT DDM . L 3 LMT C 1 1101 2100 LMT DDM . M 4 NI C 1 1102 3000 NI NI . N 2 ERY D 1 1101 2000 ERY ERY . O 3 LMT D 1 1102 2100 LMT DDM . P 3 LMT D 1 1103 2200 LMT DDM . Q 3 LMT E 1 1101 2100 LMT DDM . R 4 NI E 1 1102 3000 NI NI . S 3 LMT F 1 1101 2100 LMT DDM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . S 3 -2.438 -32.351 14.19 1 84.55 ? C1B LMT 1101 F 1 HETATM 2 C C2B LMT . . . S 3 -3.334 -32.54 12.967 1 77.31 ? C2B LMT 1101 F 1 HETATM 3 C C3B LMT . . . S 3 -4.323 -31.482 12.69 1 72.38 ? C3B LMT 1101 F 1 HETATM 4 C C4B LMT . . . S 3 -5.004 -30.885 13.889 1 73 ? C4B LMT 1101 F 1 HETATM 5 C C5B LMT . . . S 3 -4.056 -30.713 15.106 1 91.31 ? C5B LMT 1101 F 1 HETATM 6 C C6B LMT . . . S 3 -4.806 -30.463 16.369 1 99.64 ? C6B LMT 1101 F 1 HETATM 7 O O1B LMT . . . S 3 -1.414 -31.494 13.889 1 86.35 ? O1B LMT 1101 F 1 HETATM 8 O O2B LMT . . . S 3 -2.4 -32.576 11.856 1 77.69 ? O2B LMT 1101 F 1 HETATM 9 O O3B LMT . . . S 3 -5.396 -32.039 11.818 1 78.86 ? O3B LMT 1101 F 1 HETATM 10 O O4' LMT . . . S 3 -5.612 -29.663 13.38 1 49.19 ? O4' LMT 1101 F 1 HETATM 11 O O5B LMT . . . S 3 -3.19 -31.857 15.377 1 88.67 ? O5B LMT 1101 F 1 HETATM 12 O O6B LMT . . . S 3 -3.979 -30.614 17.538 1 99.87 ? O6B LMT 1101 F 1 HETATM 13 C C1' LMT . . . S 3 2.733 -31.915 13.747 1 88.42 ? C1' LMT 1101 F 1 HETATM 14 C C2' LMT . . . S 3 1.875 -32.822 12.934 1 81.19 ? C2' LMT 1101 F 1 HETATM 15 C C3' LMT . . . S 3 0.514 -32.327 12.782 1 76.66 ? C3' LMT 1101 F 1 HETATM 16 C C4' LMT . . . S 3 -0.141 -32.046 14.099 1 82.98 ? C4' LMT 1101 F 1 HETATM 17 C C5' LMT . . . S 3 0.679 -31 14.907 1 86.33 ? C5' LMT 1101 F 1 HETATM 18 C C6' LMT . . . S 3 0.078 -30.742 16.15 1 87.92 ? C6' LMT 1101 F 1 HETATM 19 O O1' LMT . . . S 3 4.052 -32.515 13.961 1 84.9 ? O1' LMT 1101 F 1 HETATM 20 O O2' LMT . . . S 3 2.445 -33.029 11.584 1 75.11 ? O2' LMT 1101 F 1 HETATM 21 O O3' LMT . . . S 3 -0.267 -33.335 12.065 1 68.26 ? O3' LMT 1101 F 1 HETATM 22 O O5' LMT . . . S 3 2.108 -31.541 15.066 1 88.26 ? O5' LMT 1101 F 1 HETATM 23 O O6' LMT . . . S 3 -0.243 -29.36 16.222 1 88.82 ? O6' LMT 1101 F 1 HETATM 24 C C1 LMT . . . S 3 5.217 -31.628 13.977 1 77.95 ? C1 LMT 1101 F 1 HETATM 25 C C2 LMT . . . S 3 6.246 -32.125 15.075 1 77.76 ? C2 LMT 1101 F 1 HETATM 26 C C3 LMT . . . S 3 7.751 -31.765 14.935 1 55.81 ? C3 LMT 1101 F 1 HETATM 27 C C4 LMT . . . S 3 8.622 -33.009 15.03 1 56.13 ? C4 LMT 1101 F 1 HETATM 28 C C5 LMT . . . S 3 10.202 -32.715 14.847 1 64.09 ? C5 LMT 1101 F 1 HETATM 29 C C6 LMT . . . S 3 11.001 -33.882 14.295 1 64.8 ? C6 LMT 1101 F 1 HETATM 30 C C7 LMT . . . S 3 10.47 -34.373 12.897 1 71.81 ? C7 LMT 1101 F 1 HETATM 31 C C8 LMT . . . S 3 11.581 -35.002 11.924 1 82.09 ? C8 LMT 1101 F 1 HETATM 32 C C9 LMT . . . S 3 12.168 -34.026 10.887 1 82.27 ? C9 LMT 1101 F 1 HETATM 33 C C10 LMT . . . S 3 13.352 -34.605 10.05 1 80.44 ? C10 LMT 1101 F 1 HETATM 34 C C11 LMT . . . S 3 14.273 -33.519 9.36 1 73.98 ? C11 LMT 1101 F 1 HETATM 35 C C12 LMT . . . S 3 15.517 -34.08 8.662 1 66.4 ? C12 LMT 1101 F 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 66 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 35 #