data_4ZJO # _model_server_result.job_id J6wt0O034yYYq4DwA69I_A _model_server_result.datetime_utc '2024-11-23 22:03:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zjo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":1102}' # _entry.id 4ZJO # _exptl.entry_id 4ZJO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.09 _cell.angle_gamma 90 _cell.entry_id 4ZJO _cell.length_a 151.184 _cell.length_b 156.769 _cell.length_c 218.168 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZJO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L,M 1 1 D,E,F,N,O,P,Q,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 M N N ? 4 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 525 A HIS 525 1_555 J NI NI . A NI 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc2 A OD1 ASP 529 A ASP 529 1_555 J NI NI . A NI 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc3 A OD2 ASP 529 A ASP 529 1_555 J NI NI . A NI 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc4 J NI NI . A NI 1104 2_646 B NE2 HIS 525 B HIS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc5 J NI NI . A NI 1104 2_646 B OD1 ASP 529 B ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc6 J NI NI . A NI 1104 2_646 B OD2 ASP 529 B ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc7 C NE2 HIS 525 C HIS 525 1_555 M NI NI . C NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? metalc ? metalc8 C OD1 ASP 529 C ASP 529 1_555 M NI NI . C NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc9 C OD2 ASP 529 C ASP 529 1_555 M NI NI . C NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.749 ? metalc ? metalc10 M NI NI . C NI 1102 1_554 D NE2 HIS 525 D HIS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.774 ? metalc ? metalc11 M NI NI . C NI 1102 1_554 D OD1 ASP 529 D ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc12 M NI NI . C NI 1102 1_554 D OD2 ASP 529 D ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? metalc ? metalc13 E NE2 HIS 525 E HIS 525 1_555 R NI NI . E NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc14 E OD1 ASP 529 E ASP 529 1_555 R NI NI . E NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc15 E OD2 ASP 529 E ASP 529 1_555 R NI NI . E NI 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc16 R NI NI . E NI 1102 2_545 F NE2 HIS 525 F HIS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc17 R NI NI . E NI 1102 2_545 F OD1 ASP 529 F ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc18 R NI NI . E NI 1102 2_545 F OD2 ASP 529 F ASP 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.803 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4ZJO _atom_sites.fract_transf_matrix[1][1] 0.006614 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000357 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006379 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00459 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ERY A 1 1101 2000 ERY ERY . H 3 LMT A 1 1102 2100 LMT DDM . I 3 LMT A 1 1103 2200 LMT DDM . J 4 NI A 1 1104 3000 NI NI . K 3 LMT B 1 1101 2100 LMT DDM . L 3 LMT C 1 1101 2100 LMT DDM . M 4 NI C 1 1102 3000 NI NI . N 2 ERY D 1 1101 2000 ERY ERY . O 3 LMT D 1 1102 2100 LMT DDM . P 3 LMT D 1 1103 2200 LMT DDM . Q 3 LMT E 1 1101 2100 LMT DDM . R 4 NI E 1 1102 3000 NI NI . S 3 LMT F 1 1101 2100 LMT DDM . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id R _atom_site.label_entity_id 4 _atom_site.Cartn_x 1.485 _atom_site.Cartn_y 45.01 _atom_site.Cartn_z -1.798 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 94.15 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 1102 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #