data_4ZK5 # _model_server_result.job_id sp3Y-ICbqOAvVAijuCupGA _model_server_result.datetime_utc '2025-09-13 12:36:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zk5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 4ZK5 # _exptl.entry_id 4ZK5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 405.425 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-amino-N-[1-(cyclopropylcarbonyl)azetidin-3-yl]-2-(3-fluorophenyl)-1,7-naphthyridine-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZK5 _cell.length_a 79.352 _cell.length_b 89.335 _cell.length_c 91.011 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZK5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 78 A SER 77 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc2 A O HIS 80 A HIS 79 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc3 A O ILE 83 A ILE 82 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc4 A OG1 THR 85 A THR 84 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? # _chem_comp.formula 'C22 H20 F N5 O2' _chem_comp.formula_weight 405.425 _chem_comp.id 4P4 _chem_comp.mon_nstd_flag . _chem_comp.name 8-amino-N-[1-(cyclopropylcarbonyl)azetidin-3-yl]-2-(3-fluorophenyl)-1,7-naphthyridine-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GNE-495 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 4P4 doub 1 n y C1 C6 4P4 sing 2 n y C2 C3 4P4 sing 3 n y O20 C19 4P4 doub 4 n n C9 C10 4P4 doub 5 n y C9 C8 4P4 sing 6 n y C10 C11 4P4 sing 7 n y C6 C5 4P4 doub 8 n y C3 C8 4P4 sing 9 n n C3 C4 4P4 doub 10 n y C22 C23 4P4 sing 11 n n C22 C25 4P4 sing 12 n n C22 N21 4P4 sing 13 n n C23 N24 4P4 sing 14 n n C8 N17 4P4 doub 15 n y C19 N21 4P4 sing 16 n n C19 C12 4P4 sing 17 n n C25 N24 4P4 sing 18 n n C11 C12 4P4 doub 19 n y C11 C16 4P4 sing 20 n y C5 C4 4P4 sing 21 n y C5 F7 4P4 sing 22 n n N24 C26 4P4 sing 23 n n C12 C13 4P4 sing 24 n y N17 C16 4P4 sing 25 n y C16 C15 4P4 doub 26 n y C26 O27 4P4 doub 27 n n C26 C28 4P4 sing 28 n n C13 N14 4P4 doub 29 n y C28 C29 4P4 sing 30 n n C28 C30 4P4 sing 31 n n C15 N14 4P4 sing 32 n y C15 N18 4P4 sing 33 n n C29 C30 4P4 sing 34 n n C4 H1 4P4 sing 35 n n C6 H2 4P4 sing 36 n n C9 H3 4P4 sing 37 n n C10 H4 4P4 sing 38 n n C13 H5 4P4 sing 39 n n C1 H6 4P4 sing 40 n n C2 H7 4P4 sing 41 n n N18 H8 4P4 sing 42 n n N18 H9 4P4 sing 43 n n N21 H10 4P4 sing 44 n n C22 H11 4P4 sing 45 n n C23 H12 4P4 sing 46 n n C23 H13 4P4 sing 47 n n C25 H14 4P4 sing 48 n n C25 H15 4P4 sing 49 n n C28 H16 4P4 sing 50 n n C29 H17 4P4 sing 51 n n C29 H18 4P4 sing 52 n n C30 H19 4P4 sing 53 n n C30 H20 4P4 sing 54 n n # _atom_sites.entry_id 4ZK5 _atom_sites.fract_transf_matrix[1][1] 0.012602 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011194 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010988 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 401 900 MG MG . D 3 MES A 1 402 1 MES MES . E 4 4P4 A 1 403 1 4P4 DRG . F 5 HOH A 1 501 103 HOH HOH . F 5 HOH A 2 502 99 HOH HOH . F 5 HOH A 3 503 17 HOH HOH . F 5 HOH A 4 504 79 HOH HOH . F 5 HOH A 5 505 93 HOH HOH . F 5 HOH A 6 506 44 HOH HOH . F 5 HOH A 7 507 43 HOH HOH . F 5 HOH A 8 508 10 HOH HOH . F 5 HOH A 9 509 65 HOH HOH . F 5 HOH A 10 510 115 HOH HOH . F 5 HOH A 11 511 13 HOH HOH . F 5 HOH A 12 512 12 HOH HOH . F 5 HOH A 13 513 118 HOH HOH . F 5 HOH A 14 514 4 HOH HOH . F 5 HOH A 15 515 51 HOH HOH . F 5 HOH A 16 516 113 HOH HOH . F 5 HOH A 17 517 23 HOH HOH . F 5 HOH A 18 518 94 HOH HOH . F 5 HOH A 19 519 15 HOH HOH . F 5 HOH A 20 520 6 HOH HOH . F 5 HOH A 21 521 110 HOH HOH . F 5 HOH A 22 522 131 HOH HOH . F 5 HOH A 23 523 70 HOH HOH . F 5 HOH A 24 524 46 HOH HOH . F 5 HOH A 25 525 71 HOH HOH . F 5 HOH A 26 526 129 HOH HOH . F 5 HOH A 27 527 109 HOH HOH . F 5 HOH A 28 528 124 HOH HOH . F 5 HOH A 29 529 60 HOH HOH . F 5 HOH A 30 530 74 HOH HOH . F 5 HOH A 31 531 9 HOH HOH . F 5 HOH A 32 532 66 HOH HOH . F 5 HOH A 33 533 7 HOH HOH . F 5 HOH A 34 534 38 HOH HOH . F 5 HOH A 35 535 88 HOH HOH . F 5 HOH A 36 536 29 HOH HOH . F 5 HOH A 37 537 41 HOH HOH . F 5 HOH A 38 538 89 HOH HOH . F 5 HOH A 39 539 34 HOH HOH . F 5 HOH A 40 540 14 HOH HOH . F 5 HOH A 41 541 26 HOH HOH . F 5 HOH A 42 542 107 HOH HOH . F 5 HOH A 43 543 45 HOH HOH . F 5 HOH A 44 544 130 HOH HOH . F 5 HOH A 45 545 106 HOH HOH . F 5 HOH A 46 546 126 HOH HOH . F 5 HOH A 47 547 78 HOH HOH . F 5 HOH A 48 548 116 HOH HOH . F 5 HOH A 49 549 80 HOH HOH . F 5 HOH A 50 550 16 HOH HOH . F 5 HOH A 51 551 104 HOH HOH . G 5 HOH B 1 401 49 HOH HOH . G 5 HOH B 2 402 19 HOH HOH . G 5 HOH B 3 403 73 HOH HOH . G 5 HOH B 4 404 102 HOH HOH . G 5 HOH B 5 405 61 HOH HOH . G 5 HOH B 6 406 21 HOH HOH . G 5 HOH B 7 407 112 HOH HOH . G 5 HOH B 8 408 1 HOH HOH . G 5 HOH B 9 409 111 HOH HOH . G 5 HOH B 10 410 53 HOH HOH . G 5 HOH B 11 411 117 HOH HOH . G 5 HOH B 12 412 128 HOH HOH . G 5 HOH B 13 413 31 HOH HOH . G 5 HOH B 14 414 114 HOH HOH . G 5 HOH B 15 415 120 HOH HOH . G 5 HOH B 16 416 37 HOH HOH . G 5 HOH B 17 417 48 HOH HOH . G 5 HOH B 18 418 40 HOH HOH . G 5 HOH B 19 419 3 HOH HOH . G 5 HOH B 20 420 123 HOH HOH . G 5 HOH B 21 421 125 HOH HOH . G 5 HOH B 22 422 20 HOH HOH . G 5 HOH B 23 423 98 HOH HOH . G 5 HOH B 24 424 95 HOH HOH . G 5 HOH B 25 425 62 HOH HOH . G 5 HOH B 26 426 122 HOH HOH . G 5 HOH B 27 427 36 HOH HOH . G 5 HOH B 28 428 85 HOH HOH . G 5 HOH B 29 429 121 HOH HOH . G 5 HOH B 30 430 56 HOH HOH . G 5 HOH B 31 431 72 HOH HOH . G 5 HOH B 32 432 54 HOH HOH . G 5 HOH B 33 433 97 HOH HOH . G 5 HOH B 34 434 100 HOH HOH . G 5 HOH B 35 435 105 HOH HOH . G 5 HOH B 36 436 69 HOH HOH . G 5 HOH B 37 437 127 HOH HOH . G 5 HOH B 38 438 58 HOH HOH . G 5 HOH B 39 439 81 HOH HOH . G 5 HOH B 40 440 57 HOH HOH . G 5 HOH B 41 441 24 HOH HOH . G 5 HOH B 42 442 92 HOH HOH . G 5 HOH B 43 443 42 HOH HOH . G 5 HOH B 44 444 90 HOH HOH . G 5 HOH B 45 445 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 4P4 . . . E 4 -21.71 8.409 -15.886 1 48.28 ? C4 4P4 403 A 1 HETATM 2 C C5 4P4 . . . E 4 -20.706 9.32 -16.099 1 49.86 ? C5 4P4 403 A 1 HETATM 3 C C6 4P4 . . . E 4 -20.092 9.487 -17.311 1 47.87 ? C6 4P4 403 A 1 HETATM 4 C C11 4P4 . . . E 4 -24.943 4.481 -16.138 1 42.56 ? C11 4P4 403 A 1 HETATM 5 C C8 4P4 . . . E 4 -23.1 6.498 -16.695 1 44.53 ? C8 4P4 403 A 1 HETATM 6 C C9 4P4 . . . E 4 -23.313 5.483 -17.628 1 41.57 ? C9 4P4 403 A 1 HETATM 7 C C10 4P4 . . . E 4 -24.207 4.486 -17.352 1 40.99 ? C10 4P4 403 A 1 HETATM 8 C C12 4P4 . . . E 4 -25.899 3.476 -15.772 1 43.21 ? C12 4P4 403 A 1 HETATM 9 C C13 4P4 . . . E 4 -26.556 3.695 -14.557 1 42.27 ? C13 4P4 403 A 1 HETATM 10 C C3 4P4 . . . E 4 -22.138 7.601 -16.941 1 46.98 ? C3 4P4 403 A 1 HETATM 11 C C1 4P4 . . . E 4 -20.521 8.7 -18.368 1 46.49 ? C1 4P4 403 A 1 HETATM 12 C C2 4P4 . . . E 4 -21.532 7.769 -18.187 1 46.85 ? C2 4P4 403 A 1 HETATM 13 F F7 4P4 . . . E 4 -20.308 10.096 -15.052 1 52.17 ? F7 4P4 403 A 1 HETATM 14 N N14 4P4 . . . E 4 -26.388 4.73 -13.726 1 42.38 ? N14 4P4 403 A 1 HETATM 15 C C15 4P4 . . . E 4 -25.48 5.692 -14.047 1 42.38 ? C15 4P4 403 A 1 HETATM 16 C C16 4P4 . . . E 4 -24.703 5.583 -15.262 1 44.08 ? C16 4P4 403 A 1 HETATM 17 N N17 4P4 . . . E 4 -23.78 6.549 -15.553 1 45.28 ? N17 4P4 403 A 1 HETATM 18 N N18 4P4 . . . E 4 -25.356 6.773 -13.256 1 42.03 ? N18 4P4 403 A 1 HETATM 19 C C19 4P4 . . . E 4 -26.185 2.26 -16.613 1 45.63 ? C19 4P4 403 A 1 HETATM 20 O O20 4P4 . . . E 4 -25.55 2.009 -17.635 1 45.52 ? O20 4P4 403 A 1 HETATM 21 N N21 4P4 . . . E 4 -27.184 1.477 -16.169 1 47.06 ? N21 4P4 403 A 1 HETATM 22 C C22 4P4 . . . E 4 -27.719 0.352 -16.934 1 48.77 ? C22 4P4 403 A 1 HETATM 23 C C23 4P4 . . . E 4 -26.903 -0.972 -16.777 1 50.74 ? C23 4P4 403 A 1 HETATM 24 N N24 4P4 . . . E 4 -28.004 -1.526 -15.942 1 51.32 ? N24 4P4 403 A 1 HETATM 25 C C25 4P4 . . . E 4 -28.916 -0.381 -16.195 1 48.99 ? C25 4P4 403 A 1 HETATM 26 C C26 4P4 . . . E 4 -27.929 -2.543 -15.055 1 53.66 ? C26 4P4 403 A 1 HETATM 27 O O27 4P4 . . . E 4 -26.86 -3.049 -14.75 1 53.96 ? O27 4P4 403 A 1 HETATM 28 C C28 4P4 . . . E 4 -29.241 -3.043 -14.468 1 54.34 ? C28 4P4 403 A 1 HETATM 29 C C29 4P4 . . . E 4 -29.249 -4.23 -13.538 1 54.11 ? C29 4P4 403 A 1 HETATM 30 C C30 4P4 . . . E 4 -29.392 -2.87 -12.978 1 53.88 ? C30 4P4 403 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 30 #