data_4ZKL
#
_model_server_result.job_id            UNliWJRngM1vFE7pWuyFCw 
_model_server_result.datetime_utc      '2024-10-18 16:23:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4zkl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    4ZKL 
#
_exptl.entry_id    4ZKL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.41 
_cell.angle_gamma         90 
_cell.entry_id            4ZKL 
_cell.length_a            63.714 
_cell.length_b            46.419 
_cell.length_c            103.413 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ZKL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,H,I 1 1 
C,D,G,J,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     4ZKL 
_atom_sites.fract_transf_matrix[1][1]    0.015695 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00204 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021543 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009751 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 AMP B 1 201 1 AMP AMP . 
F 3 JB6 B 1 202 1 JB6 JB6 . 
G 2 AMP D 1 201 2 AMP AMP . 
H 4 HOH A 1 201 109 HOH HOH . 
H 4 HOH A 2 202 173 HOH HOH . 
H 4 HOH A 3 203 182 HOH HOH . 
H 4 HOH A 4 204 15 HOH HOH . 
H 4 HOH A 5 205 13 HOH HOH . 
H 4 HOH A 6 206 106 HOH HOH . 
H 4 HOH A 7 207 5 HOH HOH . 
H 4 HOH A 8 208 108 HOH HOH . 
H 4 HOH A 9 209 138 HOH HOH . 
H 4 HOH A 10 210 171 HOH HOH . 
H 4 HOH A 11 211 111 HOH HOH . 
H 4 HOH A 12 212 110 HOH HOH . 
H 4 HOH A 13 213 175 HOH HOH . 
H 4 HOH A 14 214 53 HOH HOH . 
H 4 HOH A 15 215 112 HOH HOH . 
H 4 HOH A 16 216 42 HOH HOH . 
H 4 HOH A 17 217 24 HOH HOH . 
H 4 HOH A 18 218 115 HOH HOH . 
H 4 HOH A 19 219 10 HOH HOH . 
H 4 HOH A 20 220 38 HOH HOH . 
H 4 HOH A 21 221 31 HOH HOH . 
H 4 HOH A 22 222 58 HOH HOH . 
H 4 HOH A 23 223 9 HOH HOH . 
H 4 HOH A 24 224 172 HOH HOH . 
H 4 HOH A 25 225 4 HOH HOH . 
H 4 HOH A 26 226 21 HOH HOH . 
H 4 HOH A 27 227 165 HOH HOH . 
H 4 HOH A 28 228 23 HOH HOH . 
H 4 HOH A 29 229 20 HOH HOH . 
H 4 HOH A 30 230 34 HOH HOH . 
H 4 HOH A 31 231 6 HOH HOH . 
H 4 HOH A 32 232 100 HOH HOH . 
H 4 HOH A 33 233 141 HOH HOH . 
H 4 HOH A 34 234 46 HOH HOH . 
H 4 HOH A 35 235 1 HOH HOH . 
H 4 HOH A 36 236 174 HOH HOH . 
H 4 HOH A 37 237 183 HOH HOH . 
H 4 HOH A 38 238 3 HOH HOH . 
H 4 HOH A 39 239 39 HOH HOH . 
H 4 HOH A 40 240 11 HOH HOH . 
H 4 HOH A 41 241 49 HOH HOH . 
H 4 HOH A 42 242 32 HOH HOH . 
H 4 HOH A 43 243 142 HOH HOH . 
H 4 HOH A 44 244 176 HOH HOH . 
H 4 HOH A 45 245 133 HOH HOH . 
H 4 HOH A 46 246 193 HOH HOH . 
H 4 HOH A 47 247 104 HOH HOH . 
H 4 HOH A 48 248 37 HOH HOH . 
H 4 HOH A 49 249 120 HOH HOH . 
H 4 HOH A 50 250 43 HOH HOH . 
H 4 HOH A 51 251 102 HOH HOH . 
H 4 HOH A 52 252 170 HOH HOH . 
H 4 HOH A 53 253 48 HOH HOH . 
H 4 HOH A 54 254 47 HOH HOH . 
H 4 HOH A 55 255 28 HOH HOH . 
H 4 HOH A 56 256 177 HOH HOH . 
H 4 HOH A 57 257 185 HOH HOH . 
H 4 HOH A 58 258 116 HOH HOH . 
H 4 HOH A 59 259 184 HOH HOH . 
H 4 HOH A 60 260 62 HOH HOH . 
H 4 HOH A 61 261 103 HOH HOH . 
H 4 HOH A 62 262 107 HOH HOH . 
H 4 HOH A 63 263 56 HOH HOH . 
H 4 HOH A 64 264 140 HOH HOH . 
H 4 HOH A 65 265 143 HOH HOH . 
H 4 HOH A 66 266 40 HOH HOH . 
H 4 HOH A 67 267 139 HOH HOH . 
H 4 HOH A 68 268 164 HOH HOH . 
H 4 HOH A 69 269 114 HOH HOH . 
H 4 HOH A 70 270 35 HOH HOH . 
H 4 HOH A 71 271 65 HOH HOH . 
H 4 HOH A 72 272 57 HOH HOH . 
H 4 HOH A 73 273 41 HOH HOH . 
H 4 HOH A 74 274 180 HOH HOH . 
H 4 HOH A 75 275 122 HOH HOH . 
H 4 HOH A 76 276 181 HOH HOH . 
I 4 HOH B 1 301 2 HOH HOH . 
I 4 HOH B 2 302 95 HOH HOH . 
I 4 HOH B 3 303 119 HOH HOH . 
I 4 HOH B 4 304 105 HOH HOH . 
I 4 HOH B 5 305 7 HOH HOH . 
I 4 HOH B 6 306 93 HOH HOH . 
I 4 HOH B 7 307 135 HOH HOH . 
I 4 HOH B 8 308 118 HOH HOH . 
I 4 HOH B 9 309 55 HOH HOH . 
I 4 HOH B 10 310 16 HOH HOH . 
I 4 HOH B 11 311 14 HOH HOH . 
I 4 HOH B 12 312 91 HOH HOH . 
I 4 HOH B 13 313 18 HOH HOH . 
I 4 HOH B 14 314 36 HOH HOH . 
I 4 HOH B 15 315 134 HOH HOH . 
I 4 HOH B 16 316 29 HOH HOH . 
I 4 HOH B 17 317 96 HOH HOH . 
I 4 HOH B 18 318 50 HOH HOH . 
I 4 HOH B 19 319 152 HOH HOH . 
I 4 HOH B 20 320 186 HOH HOH . 
I 4 HOH B 21 321 45 HOH HOH . 
I 4 HOH B 22 322 33 HOH HOH . 
I 4 HOH B 23 323 19 HOH HOH . 
I 4 HOH B 24 324 151 HOH HOH . 
I 4 HOH B 25 325 146 HOH HOH . 
I 4 HOH B 26 326 26 HOH HOH . 
I 4 HOH B 27 327 54 HOH HOH . 
I 4 HOH B 28 328 12 HOH HOH . 
I 4 HOH B 29 329 156 HOH HOH . 
I 4 HOH B 30 330 192 HOH HOH . 
I 4 HOH B 31 331 59 HOH HOH . 
I 4 HOH B 32 332 68 HOH HOH . 
I 4 HOH B 33 333 97 HOH HOH . 
I 4 HOH B 34 334 89 HOH HOH . 
I 4 HOH B 35 335 190 HOH HOH . 
I 4 HOH B 36 336 196 HOH HOH . 
I 4 HOH B 37 337 121 HOH HOH . 
I 4 HOH B 38 338 63 HOH HOH . 
I 4 HOH B 39 339 117 HOH HOH . 
I 4 HOH B 40 340 145 HOH HOH . 
I 4 HOH B 41 341 166 HOH HOH . 
I 4 HOH B 42 342 99 HOH HOH . 
I 4 HOH B 43 343 22 HOH HOH . 
I 4 HOH B 44 344 144 HOH HOH . 
I 4 HOH B 45 345 88 HOH HOH . 
I 4 HOH B 46 346 44 HOH HOH . 
I 4 HOH B 47 347 101 HOH HOH . 
I 4 HOH B 48 348 158 HOH HOH . 
I 4 HOH B 49 349 148 HOH HOH . 
I 4 HOH B 50 350 61 HOH HOH . 
I 4 HOH B 51 351 153 HOH HOH . 
I 4 HOH B 52 352 113 HOH HOH . 
I 4 HOH B 53 353 94 HOH HOH . 
I 4 HOH B 54 354 197 HOH HOH . 
I 4 HOH B 55 355 60 HOH HOH . 
I 4 HOH B 56 356 199 HOH HOH . 
I 4 HOH B 57 357 136 HOH HOH . 
I 4 HOH B 58 358 147 HOH HOH . 
I 4 HOH B 59 359 90 HOH HOH . 
I 4 HOH B 60 360 92 HOH HOH . 
I 4 HOH B 61 361 137 HOH HOH . 
I 4 HOH B 62 362 98 HOH HOH . 
I 4 HOH B 63 363 195 HOH HOH . 
I 4 HOH B 64 364 157 HOH HOH . 
I 4 HOH B 65 365 149 HOH HOH . 
I 4 HOH B 66 366 194 HOH HOH . 
I 4 HOH B 67 367 150 HOH HOH . 
I 4 HOH B 68 368 198 HOH HOH . 
J 4 HOH C 1 201 77 HOH HOH . 
J 4 HOH C 2 202 160 HOH HOH . 
J 4 HOH C 3 203 84 HOH HOH . 
J 4 HOH C 4 204 87 HOH HOH . 
J 4 HOH C 5 205 85 HOH HOH . 
J 4 HOH C 6 206 78 HOH HOH . 
J 4 HOH C 7 207 86 HOH HOH . 
J 4 HOH C 8 208 126 HOH HOH . 
J 4 HOH C 9 209 127 HOH HOH . 
J 4 HOH C 10 210 76 HOH HOH . 
J 4 HOH C 11 211 169 HOH HOH . 
J 4 HOH C 12 212 187 HOH HOH . 
J 4 HOH C 13 213 81 HOH HOH . 
J 4 HOH C 14 214 79 HOH HOH . 
J 4 HOH C 15 215 162 HOH HOH . 
J 4 HOH C 16 216 201 HOH HOH . 
J 4 HOH C 17 217 125 HOH HOH . 
J 4 HOH C 18 218 161 HOH HOH . 
J 4 HOH C 19 219 51 HOH HOH . 
J 4 HOH C 20 220 159 HOH HOH . 
J 4 HOH C 21 221 123 HOH HOH . 
J 4 HOH C 22 222 132 HOH HOH . 
J 4 HOH C 23 223 191 HOH HOH . 
J 4 HOH C 24 224 200 HOH HOH . 
J 4 HOH C 25 225 124 HOH HOH . 
J 4 HOH C 26 226 178 HOH HOH . 
J 4 HOH C 27 227 82 HOH HOH . 
J 4 HOH C 28 228 155 HOH HOH . 
J 4 HOH C 29 229 154 HOH HOH . 
J 4 HOH C 30 230 168 HOH HOH . 
J 4 HOH C 31 231 75 HOH HOH . 
K 4 HOH D 1 301 72 HOH HOH . 
K 4 HOH D 2 302 130 HOH HOH . 
K 4 HOH D 3 303 70 HOH HOH . 
K 4 HOH D 4 304 69 HOH HOH . 
K 4 HOH D 5 305 30 HOH HOH . 
K 4 HOH D 6 306 73 HOH HOH . 
K 4 HOH D 7 307 67 HOH HOH . 
K 4 HOH D 8 308 179 HOH HOH . 
K 4 HOH D 9 309 129 HOH HOH . 
K 4 HOH D 10 310 167 HOH HOH . 
K 4 HOH D 11 311 128 HOH HOH . 
K 4 HOH D 12 312 163 HOH HOH . 
K 4 HOH D 13 313 131 HOH HOH . 
K 4 HOH D 14 314 52 HOH HOH . 
K 4 HOH D 15 315 188 HOH HOH . 
K 4 HOH D 16 316 66 HOH HOH . 
K 4 HOH D 17 317 27 HOH HOH . 
K 4 HOH D 18 318 189 HOH HOH . 
K 4 HOH D 19 319 64 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . E 2 22.23 -5.039 14.36 0.4 46.64 ? P AMP 201 B 1 
HETATM 2 O O1P AMP . . . E 2 21.418 -4.741 13.14 0.4 42.23 ? O1P AMP 201 B 1 
HETATM 3 O O2P AMP . . . E 2 22.063 -6.452 14.815 0.4 52.02 ? O2P AMP 201 B 1 
HETATM 4 O O3P AMP . . . E 2 22.201 -3.95 15.408 0.4 44.5 ? O3P AMP 201 B 1 
HETATM 5 O O5' AMP . . . E 2 23.741 -4.924 13.798 0.4 47.25 ? O5' AMP 201 B 1 
HETATM 6 C C5' AMP . . . E 2 24.927 -5.524 14.358 0.4 45.86 ? C5' AMP 201 B 1 
HETATM 7 C C4' AMP . . . E 2 25.796 -6.025 13.19 0.4 44.46 ? C4' AMP 201 B 1 
HETATM 8 O O4' AMP . . . E 2 27.074 -5.363 13.142 0.4 45.09 ? O4' AMP 201 B 1 
HETATM 9 C C3' AMP . . . E 2 26.072 -7.537 13.207 0.4 41.84 ? C3' AMP 201 B 1 
HETATM 10 O O3' AMP . . . E 2 25.558 -8.085 11.992 0.4 37.4 ? O3' AMP 201 B 1 
HETATM 11 C C2' AMP . . . E 2 27.58 -7.659 13.286 0.4 42.28 ? C2' AMP 201 B 1 
HETATM 12 O O2' AMP . . . E 2 28.058 -8.815 12.583 0.4 40.38 ? O2' AMP 201 B 1 
HETATM 13 C C1' AMP . . . E 2 28.027 -6.319 12.669 0.4 43.83 ? C1' AMP 201 B 1 
HETATM 14 N N9 AMP . . . E 2 29.433 -5.978 13 0.4 41.84 ? N9 AMP 201 B 1 
HETATM 15 C C8 AMP . . . E 2 29.931 -5.818 14.243 0.4 43.38 ? C8 AMP 201 B 1 
HETATM 16 N N7 AMP . . . E 2 31.262 -5.535 14.179 0.4 43.64 ? N7 AMP 201 B 1 
HETATM 17 C C5 AMP . . . E 2 31.622 -5.527 12.877 0.4 41.13 ? C5 AMP 201 B 1 
HETATM 18 C C6 AMP . . . E 2 32.881 -5.302 12.126 0.4 41.34 ? C6 AMP 201 B 1 
HETATM 19 N N6 AMP . . . E 2 34.029 -5.031 12.801 0.4 45.89 ? N6 AMP 201 B 1 
HETATM 20 N N1 AMP . . . E 2 32.839 -5.366 10.769 0.4 39.29 ? N1 AMP 201 B 1 
HETATM 21 C C2 AMP . . . E 2 31.687 -5.65 10.104 0.4 39.32 ? C2 AMP 201 B 1 
HETATM 22 N N3 AMP . . . E 2 30.504 -5.875 10.738 0.4 37.83 ? N3 AMP 201 B 1 
HETATM 23 C C4 AMP . . . E 2 30.411 -5.823 12.096 0.4 39.11 ? C4 AMP 201 B 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           23 
#