data_4ZKR # _model_server_result.job_id dTBZmUnGUcLnMyy7XmuXug _model_server_result.datetime_utc '2025-01-10 14:34:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zkr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 4ZKR # _exptl.entry_id 4ZKR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.331 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEXAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZKR _cell.length_a 121.122 _cell.length_b 121.122 _cell.length_c 43.062 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZKR _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 U CYS 42 1_555 A SG CYS 47 U CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf2 A SG CYS 39 U CYS 50 1_555 A SG CYS 110 U CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? disulf ? disulf3 A SG CYS 135 U CYS 136 1_555 A SG CYS 204 U CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? disulf ? disulf4 A SG CYS 167 U CYS 168 1_555 A SG CYS 183 U CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? disulf ? disulf5 A SG CYS 194 U CYS 191 1_555 A SG CYS 222 U CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? # _chem_comp.formula 'C12 H26 O7' _chem_comp.formula_weight 282.331 _chem_comp.id P6G _chem_comp.mon_nstd_flag . _chem_comp.name 'HEXAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 P6G sing 237 n n O1 H1 P6G sing 238 n n C2 C3 P6G sing 239 n n C2 H21 P6G sing 240 n n C2 H22 P6G sing 241 n n C3 O4 P6G sing 242 n n C3 H31 P6G sing 243 n n C3 H32 P6G sing 244 n n O4 C5 P6G sing 245 n n C5 C6 P6G sing 246 n n C5 H51 P6G sing 247 n n C5 H52 P6G sing 248 n n C6 O7 P6G sing 249 n n C6 H61 P6G sing 250 n n C6 H62 P6G sing 251 n n O7 C8 P6G sing 252 n n C8 C9 P6G sing 253 n n C8 H81 P6G sing 254 n n C8 H82 P6G sing 255 n n C9 O10 P6G sing 256 n n C9 H91 P6G sing 257 n n C9 H92 P6G sing 258 n n O10 C11 P6G sing 259 n n C11 C12 P6G sing 260 n n C11 H111 P6G sing 261 n n C11 H112 P6G sing 262 n n C12 O13 P6G sing 263 n n C12 H121 P6G sing 264 n n C12 H122 P6G sing 265 n n O13 C14 P6G sing 266 n n C14 C15 P6G sing 267 n n C14 H141 P6G sing 268 n n C14 H142 P6G sing 269 n n C15 O16 P6G sing 270 n n C15 H151 P6G sing 271 n n C15 H152 P6G sing 272 n n O16 C17 P6G sing 273 n n C17 C18 P6G sing 274 n n C17 H171 P6G sing 275 n n C17 H172 P6G sing 276 n n C18 O19 P6G sing 277 n n C18 H181 P6G sing 278 n n C18 H182 P6G sing 279 n n O19 H19 P6G sing 280 n n # _atom_sites.entry_id 4ZKR _atom_sites.fract_transf_matrix[1][1] 0.008256 _atom_sites.fract_transf_matrix[1][2] 0.004767 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023222 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 U 1 301 301 SO4 SO4 . D 4 P6G U 1 302 302 P6G P6G . E 5 HOH U 1 401 403 HOH HOH . E 5 HOH U 2 402 404 HOH HOH . E 5 HOH U 3 403 405 HOH HOH . E 5 HOH U 4 404 407 HOH HOH . E 5 HOH U 5 405 408 HOH HOH . E 5 HOH U 6 406 409 HOH HOH . E 5 HOH U 7 407 410 HOH HOH . E 5 HOH U 8 408 411 HOH HOH . E 5 HOH U 9 409 412 HOH HOH . E 5 HOH U 10 410 413 HOH HOH . E 5 HOH U 11 411 414 HOH HOH . E 5 HOH U 12 412 415 HOH HOH . E 5 HOH U 13 413 416 HOH HOH . E 5 HOH U 14 414 417 HOH HOH . E 5 HOH U 15 415 418 HOH HOH . E 5 HOH U 16 416 419 HOH HOH . E 5 HOH U 17 417 420 HOH HOH . E 5 HOH U 18 418 421 HOH HOH . E 5 HOH U 19 419 422 HOH HOH . E 5 HOH U 20 420 423 HOH HOH . E 5 HOH U 21 421 424 HOH HOH . E 5 HOH U 22 422 425 HOH HOH . E 5 HOH U 23 423 427 HOH HOH . E 5 HOH U 24 424 429 HOH HOH . E 5 HOH U 25 425 430 HOH HOH . E 5 HOH U 26 426 431 HOH HOH . E 5 HOH U 27 427 432 HOH HOH . E 5 HOH U 28 428 433 HOH HOH . E 5 HOH U 29 429 434 HOH HOH . E 5 HOH U 30 430 435 HOH HOH . E 5 HOH U 31 431 436 HOH HOH . E 5 HOH U 32 432 437 HOH HOH . E 5 HOH U 33 433 438 HOH HOH . E 5 HOH U 34 434 439 HOH HOH . E 5 HOH U 35 435 440 HOH HOH . E 5 HOH U 36 436 441 HOH HOH . E 5 HOH U 37 437 442 HOH HOH . E 5 HOH U 38 438 443 HOH HOH . E 5 HOH U 39 439 444 HOH HOH . E 5 HOH U 40 440 445 HOH HOH . E 5 HOH U 41 441 447 HOH HOH . E 5 HOH U 42 442 448 HOH HOH . E 5 HOH U 43 443 449 HOH HOH . E 5 HOH U 44 444 450 HOH HOH . E 5 HOH U 45 445 451 HOH HOH . E 5 HOH U 46 446 452 HOH HOH . E 5 HOH U 47 447 453 HOH HOH . E 5 HOH U 48 448 454 HOH HOH . E 5 HOH U 49 449 455 HOH HOH . E 5 HOH U 50 450 446 HOH HOH . E 5 HOH U 51 451 456 HOH HOH . E 5 HOH U 52 452 457 HOH HOH . E 5 HOH U 53 453 458 HOH HOH . E 5 HOH U 54 454 459 HOH HOH . E 5 HOH U 55 455 460 HOH HOH . E 5 HOH U 56 456 461 HOH HOH . E 5 HOH U 57 457 462 HOH HOH . E 5 HOH U 58 458 463 HOH HOH . E 5 HOH U 59 459 464 HOH HOH . E 5 HOH U 60 460 465 HOH HOH . E 5 HOH U 61 461 466 HOH HOH . E 5 HOH U 62 462 467 HOH HOH . E 5 HOH U 63 463 468 HOH HOH . E 5 HOH U 64 464 402 HOH HOH . E 5 HOH U 65 465 469 HOH HOH . E 5 HOH U 66 466 470 HOH HOH . E 5 HOH U 67 467 471 HOH HOH . E 5 HOH U 68 468 428 HOH HOH . E 5 HOH U 69 469 472 HOH HOH . E 5 HOH U 70 470 473 HOH HOH . E 5 HOH U 71 471 474 HOH HOH . E 5 HOH U 72 472 475 HOH HOH . E 5 HOH U 73 473 476 HOH HOH . E 5 HOH U 74 474 477 HOH HOH . E 5 HOH U 75 475 478 HOH HOH . E 5 HOH U 76 476 479 HOH HOH . E 5 HOH U 77 477 480 HOH HOH . E 5 HOH U 78 478 481 HOH HOH . E 5 HOH U 79 479 482 HOH HOH . E 5 HOH U 80 480 483 HOH HOH . E 5 HOH U 81 481 484 HOH HOH . E 5 HOH U 82 482 485 HOH HOH . E 5 HOH U 83 483 486 HOH HOH . E 5 HOH U 84 484 487 HOH HOH . E 5 HOH U 85 485 488 HOH HOH . E 5 HOH U 86 486 489 HOH HOH . E 5 HOH U 87 487 490 HOH HOH . E 5 HOH U 88 488 491 HOH HOH . E 5 HOH U 89 489 492 HOH HOH . E 5 HOH U 90 490 493 HOH HOH . E 5 HOH U 91 491 494 HOH HOH . E 5 HOH U 92 492 495 HOH HOH . E 5 HOH U 93 493 496 HOH HOH . E 5 HOH U 94 494 497 HOH HOH . E 5 HOH U 95 495 498 HOH HOH . E 5 HOH U 96 496 499 HOH HOH . E 5 HOH U 97 497 501 HOH HOH . E 5 HOH U 98 498 502 HOH HOH . E 5 HOH U 99 499 503 HOH HOH . E 5 HOH U 100 500 504 HOH HOH . E 5 HOH U 101 501 505 HOH HOH . E 5 HOH U 102 502 506 HOH HOH . E 5 HOH U 103 503 507 HOH HOH . E 5 HOH U 104 504 508 HOH HOH . E 5 HOH U 105 505 509 HOH HOH . E 5 HOH U 106 506 510 HOH HOH . E 5 HOH U 107 507 511 HOH HOH . E 5 HOH U 108 508 512 HOH HOH . E 5 HOH U 109 509 513 HOH HOH . E 5 HOH U 110 510 514 HOH HOH . E 5 HOH U 111 511 515 HOH HOH . E 5 HOH U 112 512 516 HOH HOH . E 5 HOH U 113 513 517 HOH HOH . E 5 HOH U 114 514 518 HOH HOH . E 5 HOH U 115 515 519 HOH HOH . E 5 HOH U 116 516 520 HOH HOH . E 5 HOH U 117 517 543 HOH HOH . E 5 HOH U 118 518 521 HOH HOH . E 5 HOH U 119 519 522 HOH HOH . E 5 HOH U 120 520 523 HOH HOH . E 5 HOH U 121 521 524 HOH HOH . E 5 HOH U 122 522 525 HOH HOH . E 5 HOH U 123 523 526 HOH HOH . E 5 HOH U 124 524 527 HOH HOH . E 5 HOH U 125 525 528 HOH HOH . E 5 HOH U 126 526 529 HOH HOH . E 5 HOH U 127 527 530 HOH HOH . E 5 HOH U 128 528 531 HOH HOH . E 5 HOH U 129 529 532 HOH HOH . E 5 HOH U 130 530 533 HOH HOH . E 5 HOH U 131 531 534 HOH HOH . E 5 HOH U 132 532 535 HOH HOH . E 5 HOH U 133 533 536 HOH HOH . E 5 HOH U 134 534 537 HOH HOH . E 5 HOH U 135 535 538 HOH HOH . E 5 HOH U 136 536 539 HOH HOH . E 5 HOH U 137 537 541 HOH HOH . E 5 HOH U 138 538 540 HOH HOH . E 5 HOH U 139 539 544 HOH HOH . E 5 HOH U 140 540 545 HOH HOH . E 5 HOH U 141 541 542 HOH HOH . E 5 HOH U 142 542 546 HOH HOH . E 5 HOH U 143 543 426 HOH HOH . E 5 HOH U 144 544 547 HOH HOH . E 5 HOH U 145 545 548 HOH HOH . E 5 HOH U 146 546 549 HOH HOH . E 5 HOH U 147 547 550 HOH HOH . E 5 HOH U 148 548 551 HOH HOH . E 5 HOH U 149 549 552 HOH HOH . E 5 HOH U 150 550 553 HOH HOH . E 5 HOH U 151 551 554 HOH HOH . E 5 HOH U 152 552 555 HOH HOH . E 5 HOH U 153 553 556 HOH HOH . E 5 HOH U 154 554 557 HOH HOH . E 5 HOH U 155 555 558 HOH HOH . E 5 HOH U 156 556 559 HOH HOH . E 5 HOH U 157 557 560 HOH HOH . E 5 HOH U 158 558 561 HOH HOH . E 5 HOH U 159 559 562 HOH HOH . E 5 HOH U 160 560 563 HOH HOH . E 5 HOH U 161 561 564 HOH HOH . E 5 HOH U 162 562 565 HOH HOH . E 5 HOH U 163 563 566 HOH HOH . E 5 HOH U 164 564 567 HOH HOH . E 5 HOH U 165 565 568 HOH HOH . E 5 HOH U 166 566 569 HOH HOH . E 5 HOH U 167 567 570 HOH HOH . E 5 HOH U 168 568 571 HOH HOH . E 5 HOH U 169 569 572 HOH HOH . E 5 HOH U 170 570 573 HOH HOH . E 5 HOH U 171 571 574 HOH HOH . E 5 HOH U 172 572 575 HOH HOH . E 5 HOH U 173 573 576 HOH HOH . E 5 HOH U 174 574 577 HOH HOH . E 5 HOH U 175 575 578 HOH HOH . E 5 HOH U 176 576 579 HOH HOH . E 5 HOH U 177 577 580 HOH HOH . E 5 HOH U 178 578 581 HOH HOH . E 5 HOH U 179 579 582 HOH HOH . E 5 HOH U 180 580 583 HOH HOH . E 5 HOH U 181 581 584 HOH HOH . E 5 HOH U 182 582 585 HOH HOH . E 5 HOH U 183 583 586 HOH HOH . E 5 HOH U 184 584 587 HOH HOH . E 5 HOH U 185 585 588 HOH HOH . E 5 HOH U 186 586 589 HOH HOH . E 5 HOH U 187 587 590 HOH HOH . F 5 HOH P 1 101 101 HOH HOH . F 5 HOH P 2 102 102 HOH HOH . F 5 HOH P 3 103 103 HOH HOH . F 5 HOH P 4 104 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 P6G . . . D 4 -14.734 -19.28 -2.982 1 38.56 ? O1 P6G 302 U 1 HETATM 2 C C2 P6G . . . D 4 -14.565 -19.299 -1.56 1 39.27 ? C2 P6G 302 U 1 HETATM 3 C C3 P6G . . . D 4 -13.578 -20.395 -1.177 1 39.35 ? C3 P6G 302 U 1 HETATM 4 O O4 P6G . . . D 4 -12.251 -19.941 -1.434 1 40.19 ? O4 P6G 302 U 1 HETATM 5 C C5 P6G . . . D 4 -11.386 -20.139 -0.315 1 40.6 ? C5 P6G 302 U 1 HETATM 6 C C6 P6G . . . D 4 -9.992 -20.536 -0.79 1 40.68 ? C6 P6G 302 U 1 HETATM 7 O O7 P6G . . . D 4 -10.036 -21.837 -1.379 1 40.88 ? O7 P6G 302 U 1 HETATM 8 C C8 P6G . . . D 4 -8.758 -22.31 -1.814 1 41.32 ? C8 P6G 302 U 1 HETATM 9 C C9 P6G . . . D 4 -8.488 -21.854 -3.247 1 41.78 ? C9 P6G 302 U 1 HETATM 10 O O10 P6G . . . D 4 -8.564 -22.946 -4.165 1 41.93 ? O10 P6G 302 U 1 HETATM 11 C C11 P6G . . . D 4 -9.541 -22.749 -5.187 1 41.47 ? C11 P6G 302 U 1 HETATM 12 C C12 P6G . . . D 4 -8.898 -22.234 -6.471 1 41.34 ? C12 P6G 302 U 1 HETATM 13 O O13 P6G . . . D 4 -8.606 -20.844 -6.339 1 40.99 ? O13 P6G 302 U 1 HETATM 14 C C14 P6G . . . D 4 -8.999 -20.09 -7.482 1 41.22 ? C14 P6G 302 U 1 HETATM 15 C C15 P6G . . . D 4 -8.506 -18.654 -7.339 1 41.1 ? C15 P6G 302 U 1 HETATM 16 O O16 P6G . . . D 4 -8.812 -18.165 -6.035 1 41.2 ? O16 P6G 302 U 1 HETATM 17 C C17 P6G . . . D 4 -8.16 -16.925 -5.765 1 41.17 ? C17 P6G 302 U 1 HETATM 18 C C18 P6G . . . D 4 -8.588 -16.413 -4.394 1 41.56 ? C18 P6G 302 U 1 HETATM 19 O O19 P6G . . . D 4 -8.487 -14.983 -4.365 1 41.82 ? O19 P6G 302 U 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #