data_4ZL1 # _model_server_result.job_id cKkonLD9Vbh3d_fyvnGGJQ _model_server_result.datetime_utc '2024-10-12 14:28:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zl1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 4ZL1 # _exptl.entry_id 4ZL1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZL1 _cell.length_a 91.319 _cell.length_b 91.319 _cell.length_c 122.824 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZL1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 111 n n N1 C10 FMN doub 112 n n C2 O2 FMN doub 113 n n C2 N3 FMN sing 114 n n N3 C4 FMN sing 115 n n N3 HN3 FMN sing 116 n n C4 O4 FMN doub 117 n n C4 C4A FMN sing 118 n n C4A N5 FMN doub 119 n n C4A C10 FMN sing 120 n n N5 C5A FMN sing 121 n n C5A C6 FMN doub 122 n y C5A C9A FMN sing 123 n y C6 C7 FMN sing 124 n y C6 H6 FMN sing 125 n n C7 C7M FMN sing 126 n n C7 C8 FMN doub 127 n y C7M HM71 FMN sing 128 n n C7M HM72 FMN sing 129 n n C7M HM73 FMN sing 130 n n C8 C8M FMN sing 131 n n C8 C9 FMN sing 132 n y C8M HM81 FMN sing 133 n n C8M HM82 FMN sing 134 n n C8M HM83 FMN sing 135 n n C9 C9A FMN doub 136 n y C9 H9 FMN sing 137 n n C9A N10 FMN sing 138 n n N10 C10 FMN sing 139 n n N10 C1' FMN sing 140 n n C1' C2' FMN sing 141 n n C1' "H1'1" FMN sing 142 n n C1' "H1'2" FMN sing 143 n n C2' O2' FMN sing 144 n n C2' C3' FMN sing 145 n n C2' H2' FMN sing 146 n n O2' HO2' FMN sing 147 n n C3' O3' FMN sing 148 n n C3' C4' FMN sing 149 n n C3' H3' FMN sing 150 n n O3' HO3' FMN sing 151 n n C4' O4' FMN sing 152 n n C4' C5' FMN sing 153 n n C4' H4' FMN sing 154 n n O4' HO4' FMN sing 155 n n C5' O5' FMN sing 156 n n C5' "H5'1" FMN sing 157 n n C5' "H5'2" FMN sing 158 n n O5' P FMN sing 159 n n P O1P FMN doub 160 n n P O2P FMN sing 161 n n P O3P FMN sing 162 n n O2P HOP2 FMN sing 163 n n O3P HOP3 FMN sing 164 n n # _atom_sites.entry_id 4ZL1 _atom_sites.fract_transf_matrix[1][1] 0.010951 _atom_sites.fract_transf_matrix[1][2] 0.006322 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012645 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008142 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ORO A 1 401 1 ORO ORO . C 3 FMN A 1 402 1 FMN FMN . D 4 18X A 1 403 1 18X 18X . E 5 SO4 A 1 404 2 SO4 SO4 . F 5 SO4 A 1 405 4 SO4 SO4 . G 5 SO4 A 1 406 5 SO4 SO4 . H 5 SO4 A 1 407 6 SO4 SO4 . I 6 HOH A 1 501 44 HOH HOH . I 6 HOH A 2 502 89 HOH HOH . I 6 HOH A 3 503 104 HOH HOH . I 6 HOH A 4 504 159 HOH HOH . I 6 HOH A 5 505 93 HOH HOH . I 6 HOH A 6 506 111 HOH HOH . I 6 HOH A 7 507 96 HOH HOH . I 6 HOH A 8 508 285 HOH HOH . I 6 HOH A 9 509 132 HOH HOH . I 6 HOH A 10 510 55 HOH HOH . I 6 HOH A 11 511 11 HOH HOH . I 6 HOH A 12 512 81 HOH HOH . I 6 HOH A 13 513 64 HOH HOH . I 6 HOH A 14 514 128 HOH HOH . I 6 HOH A 15 515 131 HOH HOH . I 6 HOH A 16 516 162 HOH HOH . I 6 HOH A 17 517 74 HOH HOH . I 6 HOH A 18 518 145 HOH HOH . I 6 HOH A 19 519 123 HOH HOH . I 6 HOH A 20 520 120 HOH HOH . I 6 HOH A 21 521 119 HOH HOH . I 6 HOH A 22 522 32 HOH HOH . I 6 HOH A 23 523 77 HOH HOH . I 6 HOH A 24 524 5 HOH HOH . I 6 HOH A 25 525 142 HOH HOH . I 6 HOH A 26 526 161 HOH HOH . I 6 HOH A 27 527 50 HOH HOH . I 6 HOH A 28 528 51 HOH HOH . I 6 HOH A 29 529 179 HOH HOH . I 6 HOH A 30 530 148 HOH HOH . I 6 HOH A 31 531 257 HOH HOH . I 6 HOH A 32 532 91 HOH HOH . I 6 HOH A 33 533 8 HOH HOH . I 6 HOH A 34 534 20 HOH HOH . I 6 HOH A 35 535 67 HOH HOH . I 6 HOH A 36 536 14 HOH HOH . I 6 HOH A 37 537 140 HOH HOH . I 6 HOH A 38 538 216 HOH HOH . I 6 HOH A 39 539 288 HOH HOH . I 6 HOH A 40 540 72 HOH HOH . I 6 HOH A 41 541 18 HOH HOH . I 6 HOH A 42 542 33 HOH HOH . I 6 HOH A 43 543 84 HOH HOH . I 6 HOH A 44 544 204 HOH HOH . I 6 HOH A 45 545 153 HOH HOH . I 6 HOH A 46 546 105 HOH HOH . I 6 HOH A 47 547 106 HOH HOH . I 6 HOH A 48 548 177 HOH HOH . I 6 HOH A 49 549 40 HOH HOH . I 6 HOH A 50 550 291 HOH HOH . I 6 HOH A 51 551 62 HOH HOH . I 6 HOH A 52 552 66 HOH HOH . I 6 HOH A 53 553 116 HOH HOH . I 6 HOH A 54 554 149 HOH HOH . I 6 HOH A 55 555 54 HOH HOH . I 6 HOH A 56 556 29 HOH HOH . I 6 HOH A 57 557 112 HOH HOH . I 6 HOH A 58 558 86 HOH HOH . I 6 HOH A 59 559 98 HOH HOH . I 6 HOH A 60 560 21 HOH HOH . I 6 HOH A 61 561 125 HOH HOH . I 6 HOH A 62 562 176 HOH HOH . I 6 HOH A 63 563 47 HOH HOH . I 6 HOH A 64 564 190 HOH HOH . I 6 HOH A 65 565 263 HOH HOH . I 6 HOH A 66 566 41 HOH HOH . I 6 HOH A 67 567 53 HOH HOH . I 6 HOH A 68 568 115 HOH HOH . I 6 HOH A 69 569 15 HOH HOH . I 6 HOH A 70 570 88 HOH HOH . I 6 HOH A 71 571 57 HOH HOH . I 6 HOH A 72 572 90 HOH HOH . I 6 HOH A 73 573 19 HOH HOH . I 6 HOH A 74 574 17 HOH HOH . I 6 HOH A 75 575 228 HOH HOH . I 6 HOH A 76 576 58 HOH HOH . I 6 HOH A 77 577 87 HOH HOH . I 6 HOH A 78 578 25 HOH HOH . I 6 HOH A 79 579 196 HOH HOH . I 6 HOH A 80 580 97 HOH HOH . I 6 HOH A 81 581 126 HOH HOH . I 6 HOH A 82 582 80 HOH HOH . I 6 HOH A 83 583 35 HOH HOH . I 6 HOH A 84 584 3 HOH HOH . I 6 HOH A 85 585 193 HOH HOH . I 6 HOH A 86 586 23 HOH HOH . I 6 HOH A 87 587 34 HOH HOH . I 6 HOH A 88 588 109 HOH HOH . I 6 HOH A 89 589 79 HOH HOH . I 6 HOH A 90 590 135 HOH HOH . I 6 HOH A 91 591 169 HOH HOH . I 6 HOH A 92 592 65 HOH HOH . I 6 HOH A 93 593 22 HOH HOH . I 6 HOH A 94 594 215 HOH HOH . I 6 HOH A 95 595 27 HOH HOH . I 6 HOH A 96 596 82 HOH HOH . I 6 HOH A 97 597 279 HOH HOH . I 6 HOH A 98 598 213 HOH HOH . I 6 HOH A 99 599 30 HOH HOH . I 6 HOH A 100 600 48 HOH HOH . I 6 HOH A 101 601 39 HOH HOH . I 6 HOH A 102 602 49 HOH HOH . I 6 HOH A 103 603 117 HOH HOH . I 6 HOH A 104 604 127 HOH HOH . I 6 HOH A 105 605 13 HOH HOH . I 6 HOH A 106 606 232 HOH HOH . I 6 HOH A 107 607 2 HOH HOH . I 6 HOH A 108 608 268 HOH HOH . I 6 HOH A 109 609 292 HOH HOH . I 6 HOH A 110 610 137 HOH HOH . I 6 HOH A 111 611 101 HOH HOH . I 6 HOH A 112 612 28 HOH HOH . I 6 HOH A 113 613 170 HOH HOH . I 6 HOH A 114 614 42 HOH HOH . I 6 HOH A 115 615 278 HOH HOH . I 6 HOH A 116 616 220 HOH HOH . I 6 HOH A 117 617 52 HOH HOH . I 6 HOH A 118 618 231 HOH HOH . I 6 HOH A 119 619 244 HOH HOH . I 6 HOH A 120 620 141 HOH HOH . I 6 HOH A 121 621 203 HOH HOH . I 6 HOH A 122 622 157 HOH HOH . I 6 HOH A 123 623 130 HOH HOH . I 6 HOH A 124 624 68 HOH HOH . I 6 HOH A 125 625 85 HOH HOH . I 6 HOH A 126 626 46 HOH HOH . I 6 HOH A 127 627 100 HOH HOH . I 6 HOH A 128 628 94 HOH HOH . I 6 HOH A 129 629 63 HOH HOH . I 6 HOH A 130 630 9 HOH HOH . I 6 HOH A 131 631 24 HOH HOH . I 6 HOH A 132 632 144 HOH HOH . I 6 HOH A 133 633 83 HOH HOH . I 6 HOH A 134 634 102 HOH HOH . I 6 HOH A 135 635 38 HOH HOH . I 6 HOH A 136 636 31 HOH HOH . I 6 HOH A 137 637 175 HOH HOH . I 6 HOH A 138 638 152 HOH HOH . I 6 HOH A 139 639 4 HOH HOH . I 6 HOH A 140 640 107 HOH HOH . I 6 HOH A 141 641 70 HOH HOH . I 6 HOH A 142 642 133 HOH HOH . I 6 HOH A 143 643 174 HOH HOH . I 6 HOH A 144 644 37 HOH HOH . I 6 HOH A 145 645 129 HOH HOH . I 6 HOH A 146 646 12 HOH HOH . I 6 HOH A 147 647 16 HOH HOH . I 6 HOH A 148 648 10 HOH HOH . I 6 HOH A 149 649 151 HOH HOH . I 6 HOH A 150 650 197 HOH HOH . I 6 HOH A 151 651 202 HOH HOH . I 6 HOH A 152 652 110 HOH HOH . I 6 HOH A 153 653 113 HOH HOH . I 6 HOH A 154 654 194 HOH HOH . I 6 HOH A 155 655 7 HOH HOH . I 6 HOH A 156 656 108 HOH HOH . I 6 HOH A 157 657 156 HOH HOH . I 6 HOH A 158 658 183 HOH HOH . I 6 HOH A 159 659 56 HOH HOH . I 6 HOH A 160 660 184 HOH HOH . I 6 HOH A 161 661 69 HOH HOH . I 6 HOH A 162 662 139 HOH HOH . I 6 HOH A 163 663 143 HOH HOH . I 6 HOH A 164 664 73 HOH HOH . I 6 HOH A 165 665 103 HOH HOH . I 6 HOH A 166 666 45 HOH HOH . I 6 HOH A 167 667 71 HOH HOH . I 6 HOH A 168 668 99 HOH HOH . I 6 HOH A 169 669 150 HOH HOH . I 6 HOH A 170 670 43 HOH HOH . I 6 HOH A 171 671 212 HOH HOH . I 6 HOH A 172 672 121 HOH HOH . I 6 HOH A 173 673 245 HOH HOH . I 6 HOH A 174 674 75 HOH HOH . I 6 HOH A 175 675 155 HOH HOH . I 6 HOH A 176 676 36 HOH HOH . I 6 HOH A 177 677 205 HOH HOH . I 6 HOH A 178 678 186 HOH HOH . I 6 HOH A 179 679 209 HOH HOH . I 6 HOH A 180 680 280 HOH HOH . I 6 HOH A 181 681 166 HOH HOH . I 6 HOH A 182 682 211 HOH HOH . I 6 HOH A 183 683 290 HOH HOH . I 6 HOH A 184 684 277 HOH HOH . I 6 HOH A 185 685 206 HOH HOH . I 6 HOH A 186 686 218 HOH HOH . I 6 HOH A 187 687 59 HOH HOH . I 6 HOH A 188 688 217 HOH HOH . I 6 HOH A 189 689 164 HOH HOH . I 6 HOH A 190 690 242 HOH HOH . I 6 HOH A 191 691 146 HOH HOH . I 6 HOH A 192 692 236 HOH HOH . I 6 HOH A 193 693 258 HOH HOH . I 6 HOH A 194 694 233 HOH HOH . I 6 HOH A 195 695 201 HOH HOH . I 6 HOH A 196 696 92 HOH HOH . I 6 HOH A 197 697 138 HOH HOH . I 6 HOH A 198 698 219 HOH HOH . I 6 HOH A 199 699 167 HOH HOH . I 6 HOH A 200 700 246 HOH HOH . I 6 HOH A 201 701 163 HOH HOH . I 6 HOH A 202 702 222 HOH HOH . I 6 HOH A 203 703 207 HOH HOH . I 6 HOH A 204 704 122 HOH HOH . I 6 HOH A 205 705 154 HOH HOH . I 6 HOH A 206 706 187 HOH HOH . I 6 HOH A 207 707 134 HOH HOH . I 6 HOH A 208 708 221 HOH HOH . I 6 HOH A 209 709 136 HOH HOH . I 6 HOH A 210 710 182 HOH HOH . I 6 HOH A 211 711 192 HOH HOH . I 6 HOH A 212 712 95 HOH HOH . I 6 HOH A 213 713 178 HOH HOH . I 6 HOH A 214 714 76 HOH HOH . I 6 HOH A 215 715 124 HOH HOH . I 6 HOH A 216 716 114 HOH HOH . I 6 HOH A 217 717 234 HOH HOH . I 6 HOH A 218 718 188 HOH HOH . I 6 HOH A 219 719 172 HOH HOH . I 6 HOH A 220 720 235 HOH HOH . I 6 HOH A 221 721 118 HOH HOH . I 6 HOH A 222 722 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 3 38.728 -18.172 11.852 1 11.16 ? N1 FMN 402 A 1 HETATM 2 C C2 FMN . . . C 3 39.076 -18.882 10.738 1 14.19 ? C2 FMN 402 A 1 HETATM 3 O O2 FMN . . . C 3 39.293 -18.232 9.675 1 15 ? O2 FMN 402 A 1 HETATM 4 N N3 FMN . . . C 3 39.2 -20.246 10.836 1 13.25 ? N3 FMN 402 A 1 HETATM 5 C C4 FMN . . . C 3 39.044 -20.949 11.923 1 13.37 ? C4 FMN 402 A 1 HETATM 6 O O4 FMN . . . C 3 39.151 -22.239 11.923 1 11.57 ? O4 FMN 402 A 1 HETATM 7 C C4A FMN . . . C 3 38.684 -20.259 13.163 1 10.94 ? C4A FMN 402 A 1 HETATM 8 N N5 FMN . . . C 3 38.572 -20.904 14.339 1 12 ? N5 FMN 402 A 1 HETATM 9 C C5A FMN . . . C 3 38.112 -20.209 15.399 1 12.11 ? C5A FMN 402 A 1 HETATM 10 C C6 FMN . . . C 3 37.869 -20.829 16.63 1 12.94 ? C6 FMN 402 A 1 HETATM 11 C C7 FMN . . . C 3 37.412 -20.143 17.737 1 12.2 ? C7 FMN 402 A 1 HETATM 12 C C7M FMN . . . C 3 37.081 -20.888 19.023 1 13.12 ? C7M FMN 402 A 1 HETATM 13 C C8 FMN . . . C 3 37.188 -18.729 17.639 1 12.05 ? C8 FMN 402 A 1 HETATM 14 C C8M FMN . . . C 3 36.656 -17.932 18.852 1 13.21 ? C8M FMN 402 A 1 HETATM 15 C C9 FMN . . . C 3 37.436 -18.083 16.449 1 11.69 ? C9 FMN 402 A 1 HETATM 16 C C9A FMN . . . C 3 37.91 -18.777 15.348 1 11.5 ? C9A FMN 402 A 1 HETATM 17 N N10 FMN . . . C 3 38.136 -18.099 14.125 1 11.55 ? N10 FMN 402 A 1 HETATM 18 C C10 FMN . . . C 3 38.505 -18.808 13.022 1 10.81 ? C10 FMN 402 A 1 HETATM 19 C C1' FMN . . . C 3 37.973 -16.669 14.019 1 11.14 ? C1' FMN 402 A 1 HETATM 20 C C2' FMN . . . C 3 36.552 -16.217 13.835 1 10.54 ? C2' FMN 402 A 1 HETATM 21 O O2' FMN . . . C 3 36.109 -16.625 12.555 1 11.13 ? O2' FMN 402 A 1 HETATM 22 C C3' FMN . . . C 3 36.41 -14.704 13.879 1 10.08 ? C3' FMN 402 A 1 HETATM 23 O O3' FMN . . . C 3 37.241 -14.112 12.82 1 10.25 ? O3' FMN 402 A 1 HETATM 24 C C4' FMN . . . C 3 36.92 -14.075 15.221 1 10.6 ? C4' FMN 402 A 1 HETATM 25 O O4' FMN . . . C 3 36.623 -14.944 16.302 1 11.05 ? O4' FMN 402 A 1 HETATM 26 C C5' FMN . . . C 3 36.279 -12.687 15.428 1 11 ? C5' FMN 402 A 1 HETATM 27 O O5' FMN . . . C 3 34.856 -12.767 15.512 1 10.83 ? O5' FMN 402 A 1 HETATM 28 P P FMN . . . C 3 34.096 -12.836 16.964 1 11.12 ? P FMN 402 A 1 HETATM 29 O O1P FMN . . . C 3 34.309 -14.241 17.528 1 11.97 ? O1P FMN 402 A 1 HETATM 30 O O2P FMN . . . C 3 34.66 -11.752 17.831 1 11.19 ? O2P FMN 402 A 1 HETATM 31 O O3P FMN . . . C 3 32.652 -12.578 16.633 1 10.87 ? O3P FMN 402 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #