data_4ZL1 # _model_server_result.job_id gMUvEgcJNI-AoqrMeeuBzA _model_server_result.datetime_utc '2024-10-12 14:29:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zl1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 4ZL1 # _exptl.entry_id 4ZL1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 368.382 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl (2Z)-cyano[3-(3-fluorobiphenyl-4-yl)-4-oxo-1,3-thiazolidin-2-ylidene]acetate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZL1 _cell.length_a 91.319 _cell.length_b 91.319 _cell.length_c 122.824 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZL1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H13 F N2 O3 S' _chem_comp.formula_weight 368.382 _chem_comp.id 18X _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl (2Z)-cyano[3-(3-fluorobiphenyl-4-yl)-4-oxo-1,3-thiazolidin-2-ylidene]acetate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C20 18X doub 1 n y C21 C22 18X sing 2 n y C20 C19 18X sing 3 n y C22 C23 18X doub 4 n y F25 C18 18X sing 5 n n C17 C18 18X doub 6 n y C17 C16 18X sing 7 n y C19 C16 18X sing 8 n n C19 C24 18X doub 9 n y C23 C24 18X sing 10 n y C18 C13 18X sing 11 n y C16 C15 18X doub 12 n y O26 C10 18X doub 13 n n C10 N9 18X sing 14 n n C10 C11 18X sing 15 n n C13 N9 18X sing 16 n n C13 C14 18X doub 17 n y C15 C14 18X sing 18 n y N9 C8 18X sing 19 n n C11 S12 18X sing 20 n n C8 S12 18X sing 21 n n C8 C1 18X doub 22 z n N4 C3 18X trip 23 n n C3 C1 18X sing 24 n n C1 C2 18X sing 25 n n C2 O6 18X sing 26 n n C2 O5 18X doub 27 n n O6 C7 18X sing 28 n n C7 H1 18X sing 29 n n C7 H2 18X sing 30 n n C7 H3 18X sing 31 n n C11 H4 18X sing 32 n n C11 H5 18X sing 33 n n C14 H6 18X sing 34 n n C15 H7 18X sing 35 n n C17 H8 18X sing 36 n n C20 H9 18X sing 37 n n C21 H10 18X sing 38 n n C22 H11 18X sing 39 n n C23 H12 18X sing 40 n n C24 H13 18X sing 41 n n # _atom_sites.entry_id 4ZL1 _atom_sites.fract_transf_matrix[1][1] 0.010951 _atom_sites.fract_transf_matrix[1][2] 0.006322 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012645 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008142 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ORO A 1 401 1 ORO ORO . C 3 FMN A 1 402 1 FMN FMN . D 4 18X A 1 403 1 18X 18X . E 5 SO4 A 1 404 2 SO4 SO4 . F 5 SO4 A 1 405 4 SO4 SO4 . G 5 SO4 A 1 406 5 SO4 SO4 . H 5 SO4 A 1 407 6 SO4 SO4 . I 6 HOH A 1 501 44 HOH HOH . I 6 HOH A 2 502 89 HOH HOH . I 6 HOH A 3 503 104 HOH HOH . I 6 HOH A 4 504 159 HOH HOH . I 6 HOH A 5 505 93 HOH HOH . I 6 HOH A 6 506 111 HOH HOH . I 6 HOH A 7 507 96 HOH HOH . I 6 HOH A 8 508 285 HOH HOH . I 6 HOH A 9 509 132 HOH HOH . I 6 HOH A 10 510 55 HOH HOH . I 6 HOH A 11 511 11 HOH HOH . I 6 HOH A 12 512 81 HOH HOH . I 6 HOH A 13 513 64 HOH HOH . I 6 HOH A 14 514 128 HOH HOH . I 6 HOH A 15 515 131 HOH HOH . I 6 HOH A 16 516 162 HOH HOH . I 6 HOH A 17 517 74 HOH HOH . I 6 HOH A 18 518 145 HOH HOH . I 6 HOH A 19 519 123 HOH HOH . I 6 HOH A 20 520 120 HOH HOH . I 6 HOH A 21 521 119 HOH HOH . I 6 HOH A 22 522 32 HOH HOH . I 6 HOH A 23 523 77 HOH HOH . I 6 HOH A 24 524 5 HOH HOH . I 6 HOH A 25 525 142 HOH HOH . I 6 HOH A 26 526 161 HOH HOH . I 6 HOH A 27 527 50 HOH HOH . I 6 HOH A 28 528 51 HOH HOH . I 6 HOH A 29 529 179 HOH HOH . I 6 HOH A 30 530 148 HOH HOH . I 6 HOH A 31 531 257 HOH HOH . I 6 HOH A 32 532 91 HOH HOH . I 6 HOH A 33 533 8 HOH HOH . I 6 HOH A 34 534 20 HOH HOH . I 6 HOH A 35 535 67 HOH HOH . I 6 HOH A 36 536 14 HOH HOH . I 6 HOH A 37 537 140 HOH HOH . I 6 HOH A 38 538 216 HOH HOH . I 6 HOH A 39 539 288 HOH HOH . I 6 HOH A 40 540 72 HOH HOH . I 6 HOH A 41 541 18 HOH HOH . I 6 HOH A 42 542 33 HOH HOH . I 6 HOH A 43 543 84 HOH HOH . I 6 HOH A 44 544 204 HOH HOH . I 6 HOH A 45 545 153 HOH HOH . I 6 HOH A 46 546 105 HOH HOH . I 6 HOH A 47 547 106 HOH HOH . I 6 HOH A 48 548 177 HOH HOH . I 6 HOH A 49 549 40 HOH HOH . I 6 HOH A 50 550 291 HOH HOH . I 6 HOH A 51 551 62 HOH HOH . I 6 HOH A 52 552 66 HOH HOH . I 6 HOH A 53 553 116 HOH HOH . I 6 HOH A 54 554 149 HOH HOH . I 6 HOH A 55 555 54 HOH HOH . I 6 HOH A 56 556 29 HOH HOH . I 6 HOH A 57 557 112 HOH HOH . I 6 HOH A 58 558 86 HOH HOH . I 6 HOH A 59 559 98 HOH HOH . I 6 HOH A 60 560 21 HOH HOH . I 6 HOH A 61 561 125 HOH HOH . I 6 HOH A 62 562 176 HOH HOH . I 6 HOH A 63 563 47 HOH HOH . I 6 HOH A 64 564 190 HOH HOH . I 6 HOH A 65 565 263 HOH HOH . I 6 HOH A 66 566 41 HOH HOH . I 6 HOH A 67 567 53 HOH HOH . I 6 HOH A 68 568 115 HOH HOH . I 6 HOH A 69 569 15 HOH HOH . I 6 HOH A 70 570 88 HOH HOH . I 6 HOH A 71 571 57 HOH HOH . I 6 HOH A 72 572 90 HOH HOH . I 6 HOH A 73 573 19 HOH HOH . I 6 HOH A 74 574 17 HOH HOH . I 6 HOH A 75 575 228 HOH HOH . I 6 HOH A 76 576 58 HOH HOH . I 6 HOH A 77 577 87 HOH HOH . I 6 HOH A 78 578 25 HOH HOH . I 6 HOH A 79 579 196 HOH HOH . I 6 HOH A 80 580 97 HOH HOH . I 6 HOH A 81 581 126 HOH HOH . I 6 HOH A 82 582 80 HOH HOH . I 6 HOH A 83 583 35 HOH HOH . I 6 HOH A 84 584 3 HOH HOH . I 6 HOH A 85 585 193 HOH HOH . I 6 HOH A 86 586 23 HOH HOH . I 6 HOH A 87 587 34 HOH HOH . I 6 HOH A 88 588 109 HOH HOH . I 6 HOH A 89 589 79 HOH HOH . I 6 HOH A 90 590 135 HOH HOH . I 6 HOH A 91 591 169 HOH HOH . I 6 HOH A 92 592 65 HOH HOH . I 6 HOH A 93 593 22 HOH HOH . I 6 HOH A 94 594 215 HOH HOH . I 6 HOH A 95 595 27 HOH HOH . I 6 HOH A 96 596 82 HOH HOH . I 6 HOH A 97 597 279 HOH HOH . I 6 HOH A 98 598 213 HOH HOH . I 6 HOH A 99 599 30 HOH HOH . I 6 HOH A 100 600 48 HOH HOH . I 6 HOH A 101 601 39 HOH HOH . I 6 HOH A 102 602 49 HOH HOH . I 6 HOH A 103 603 117 HOH HOH . I 6 HOH A 104 604 127 HOH HOH . I 6 HOH A 105 605 13 HOH HOH . I 6 HOH A 106 606 232 HOH HOH . I 6 HOH A 107 607 2 HOH HOH . I 6 HOH A 108 608 268 HOH HOH . I 6 HOH A 109 609 292 HOH HOH . I 6 HOH A 110 610 137 HOH HOH . I 6 HOH A 111 611 101 HOH HOH . I 6 HOH A 112 612 28 HOH HOH . I 6 HOH A 113 613 170 HOH HOH . I 6 HOH A 114 614 42 HOH HOH . I 6 HOH A 115 615 278 HOH HOH . I 6 HOH A 116 616 220 HOH HOH . I 6 HOH A 117 617 52 HOH HOH . I 6 HOH A 118 618 231 HOH HOH . I 6 HOH A 119 619 244 HOH HOH . I 6 HOH A 120 620 141 HOH HOH . I 6 HOH A 121 621 203 HOH HOH . I 6 HOH A 122 622 157 HOH HOH . I 6 HOH A 123 623 130 HOH HOH . I 6 HOH A 124 624 68 HOH HOH . I 6 HOH A 125 625 85 HOH HOH . I 6 HOH A 126 626 46 HOH HOH . I 6 HOH A 127 627 100 HOH HOH . I 6 HOH A 128 628 94 HOH HOH . I 6 HOH A 129 629 63 HOH HOH . I 6 HOH A 130 630 9 HOH HOH . I 6 HOH A 131 631 24 HOH HOH . I 6 HOH A 132 632 144 HOH HOH . I 6 HOH A 133 633 83 HOH HOH . I 6 HOH A 134 634 102 HOH HOH . I 6 HOH A 135 635 38 HOH HOH . I 6 HOH A 136 636 31 HOH HOH . I 6 HOH A 137 637 175 HOH HOH . I 6 HOH A 138 638 152 HOH HOH . I 6 HOH A 139 639 4 HOH HOH . I 6 HOH A 140 640 107 HOH HOH . I 6 HOH A 141 641 70 HOH HOH . I 6 HOH A 142 642 133 HOH HOH . I 6 HOH A 143 643 174 HOH HOH . I 6 HOH A 144 644 37 HOH HOH . I 6 HOH A 145 645 129 HOH HOH . I 6 HOH A 146 646 12 HOH HOH . I 6 HOH A 147 647 16 HOH HOH . I 6 HOH A 148 648 10 HOH HOH . I 6 HOH A 149 649 151 HOH HOH . I 6 HOH A 150 650 197 HOH HOH . I 6 HOH A 151 651 202 HOH HOH . I 6 HOH A 152 652 110 HOH HOH . I 6 HOH A 153 653 113 HOH HOH . I 6 HOH A 154 654 194 HOH HOH . I 6 HOH A 155 655 7 HOH HOH . I 6 HOH A 156 656 108 HOH HOH . I 6 HOH A 157 657 156 HOH HOH . I 6 HOH A 158 658 183 HOH HOH . I 6 HOH A 159 659 56 HOH HOH . I 6 HOH A 160 660 184 HOH HOH . I 6 HOH A 161 661 69 HOH HOH . I 6 HOH A 162 662 139 HOH HOH . I 6 HOH A 163 663 143 HOH HOH . I 6 HOH A 164 664 73 HOH HOH . I 6 HOH A 165 665 103 HOH HOH . I 6 HOH A 166 666 45 HOH HOH . I 6 HOH A 167 667 71 HOH HOH . I 6 HOH A 168 668 99 HOH HOH . I 6 HOH A 169 669 150 HOH HOH . I 6 HOH A 170 670 43 HOH HOH . I 6 HOH A 171 671 212 HOH HOH . I 6 HOH A 172 672 121 HOH HOH . I 6 HOH A 173 673 245 HOH HOH . I 6 HOH A 174 674 75 HOH HOH . I 6 HOH A 175 675 155 HOH HOH . I 6 HOH A 176 676 36 HOH HOH . I 6 HOH A 177 677 205 HOH HOH . I 6 HOH A 178 678 186 HOH HOH . I 6 HOH A 179 679 209 HOH HOH . I 6 HOH A 180 680 280 HOH HOH . I 6 HOH A 181 681 166 HOH HOH . I 6 HOH A 182 682 211 HOH HOH . I 6 HOH A 183 683 290 HOH HOH . I 6 HOH A 184 684 277 HOH HOH . I 6 HOH A 185 685 206 HOH HOH . I 6 HOH A 186 686 218 HOH HOH . I 6 HOH A 187 687 59 HOH HOH . I 6 HOH A 188 688 217 HOH HOH . I 6 HOH A 189 689 164 HOH HOH . I 6 HOH A 190 690 242 HOH HOH . I 6 HOH A 191 691 146 HOH HOH . I 6 HOH A 192 692 236 HOH HOH . I 6 HOH A 193 693 258 HOH HOH . I 6 HOH A 194 694 233 HOH HOH . I 6 HOH A 195 695 201 HOH HOH . I 6 HOH A 196 696 92 HOH HOH . I 6 HOH A 197 697 138 HOH HOH . I 6 HOH A 198 698 219 HOH HOH . I 6 HOH A 199 699 167 HOH HOH . I 6 HOH A 200 700 246 HOH HOH . I 6 HOH A 201 701 163 HOH HOH . I 6 HOH A 202 702 222 HOH HOH . I 6 HOH A 203 703 207 HOH HOH . I 6 HOH A 204 704 122 HOH HOH . I 6 HOH A 205 705 154 HOH HOH . I 6 HOH A 206 706 187 HOH HOH . I 6 HOH A 207 707 134 HOH HOH . I 6 HOH A 208 708 221 HOH HOH . I 6 HOH A 209 709 136 HOH HOH . I 6 HOH A 210 710 182 HOH HOH . I 6 HOH A 211 711 192 HOH HOH . I 6 HOH A 212 712 95 HOH HOH . I 6 HOH A 213 713 178 HOH HOH . I 6 HOH A 214 714 76 HOH HOH . I 6 HOH A 215 715 124 HOH HOH . I 6 HOH A 216 716 114 HOH HOH . I 6 HOH A 217 717 234 HOH HOH . I 6 HOH A 218 718 188 HOH HOH . I 6 HOH A 219 719 172 HOH HOH . I 6 HOH A 220 720 235 HOH HOH . I 6 HOH A 221 721 118 HOH HOH . I 6 HOH A 222 722 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 18X . . . D 4 21.646 -26.355 24.76 1 35.42 ? C1 18X 403 A 1 HETATM 2 C C2 18X . . . D 4 21.425 -27.242 25.923 1 43.83 ? C2 18X 403 A 1 HETATM 3 C C3 18X . . . D 4 22.887 -26.289 24.422 1 37.92 ? C3 18X 403 A 1 HETATM 4 N N4 18X . . . D 4 24.033 -26.273 24.129 1 31.02 ? N4 18X 403 A 1 HETATM 5 O O5 18X . . . D 4 20.299 -27.316 26.397 1 40.9 ? O5 18X 403 A 1 HETATM 6 O O6 18X . . . D 4 22.539 -28.016 26.46 1 45.82 ? O6 18X 403 A 1 HETATM 7 C C7 18X . . . D 4 22.334 -29.042 27.475 1 48.73 ? C7 18X 403 A 1 HETATM 8 C C8 18X . . . D 4 20.556 -25.815 24.167 1 38.07 ? C8 18X 403 A 1 HETATM 9 N N9 18X . . . D 4 20.612 -24.968 23.106 1 34.33 ? N9 18X 403 A 1 HETATM 10 C C10 18X . . . D 4 19.413 -24.476 22.663 1 38.9 ? C10 18X 403 A 1 HETATM 11 C C11 18X . . . D 4 18.185 -25.161 23.329 1 34.98 ? C11 18X 403 A 1 HETATM 12 S S12 18X . . . D 4 18.92 -26.041 24.687 1 39.47 ? S12 18X 403 A 1 HETATM 13 C C13 18X . . . D 4 21.783 -24.421 22.505 1 36.2 ? C13 18X 403 A 1 HETATM 14 C C14 18X . . . D 4 22.185 -24.679 21.183 1 32.85 ? C14 18X 403 A 1 HETATM 15 C C15 18X . . . D 4 23.348 -24.003 20.722 1 29.77 ? C15 18X 403 A 1 HETATM 16 C C16 18X . . . D 4 24.025 -23.067 21.493 1 27.43 ? C16 18X 403 A 1 HETATM 17 C C17 18X . . . D 4 23.678 -22.817 22.782 1 34.16 ? C17 18X 403 A 1 HETATM 18 C C18 18X . . . D 4 22.534 -23.434 23.31 1 33.77 ? C18 18X 403 A 1 HETATM 19 C C19 18X . . . D 4 25.223 -22.402 20.968 1 32.02 ? C19 18X 403 A 1 HETATM 20 C C20 18X . . . D 4 26.252 -22.06 21.816 1 30.85 ? C20 18X 403 A 1 HETATM 21 C C21 18X . . . D 4 27.441 -21.509 21.312 1 35.38 ? C21 18X 403 A 1 HETATM 22 C C22 18X . . . D 4 27.53 -21.284 19.926 1 32.94 ? C22 18X 403 A 1 HETATM 23 C C23 18X . . . D 4 26.456 -21.626 19.075 1 35.18 ? C23 18X 403 A 1 HETATM 24 C C24 18X . . . D 4 25.288 -22.201 19.615 1 29.86 ? C24 18X 403 A 1 HETATM 25 F F25 18X . . . D 4 22.169 -23.118 24.595 1 43.2 ? F25 18X 403 A 1 HETATM 26 O O26 18X . . . D 4 19.317 -23.554 21.782 1 38.93 ? O26 18X 403 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 26 #