data_4ZLO
#
_model_server_result.job_id            bmFrteffi_QT77E6e2e26w 
_model_server_result.datetime_utc      '2024-11-22 14:00:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4zlo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    4ZLO 
#
_exptl.entry_id    4ZLO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              328.359 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,8-difluoro-11-(4-methylpiperazin-1-yl)-5H-dibenzo[b,e][1,4]diazepine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.11 
_cell.angle_gamma         90 
_cell.entry_id            4ZLO 
_cell.length_a            63.514 
_cell.length_b            79.34 
_cell.length_c            65.789 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ZLO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E 1 1 
B,F 1 2 
A,B,C,D,E,F 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 20.450005 0 -62.529911 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 174 A SER 422 1_555 A N TPO 175 A TPO 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale2 A C TPO 175 A TPO 423 1_555 A N MET 176 A MET 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 B C SER 174 B SER 422 1_555 B N TPO 175 B TPO 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? 
covale ? covale4 B C TPO 175 B TPO 423 1_555 B N MET 176 B MET 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? 
#
_chem_comp.formula           'C18 H18 F2 N4' 
_chem_comp.formula_weight    328.359 
_chem_comp.id                4PV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,8-difluoro-11-(4-methylpiperazin-1-yl)-5H-dibenzo[b,e][1,4]diazepine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C N 4PV sing 1 n n 
N C1 4PV sing 2 n n 
N C4 4PV sing 3 n n 
C1 C2 4PV sing 4 n n 
C4 C3 4PV sing 5 n n 
C2 N1 4PV sing 6 n n 
C3 N1 4PV sing 7 n n 
N1 C5 4PV sing 8 n n 
N2 C5 4PV doub 9 n n 
N2 C6 4PV sing 10 n n 
C5 C17 4PV sing 11 n n 
C6 C7 4PV doub 12 n y 
C6 C11 4PV sing 13 n y 
C7 C8 4PV sing 14 n y 
C17 C16 4PV doub 15 n y 
C17 C12 4PV sing 16 n y 
C16 C15 4PV sing 17 n y 
C11 N3 4PV sing 18 n n 
C11 C10 4PV doub 19 n y 
N3 C12 4PV sing 20 n n 
C8 F 4PV sing 21 n n 
C8 C9 4PV doub 22 n y 
C12 C13 4PV doub 23 n y 
C15 F1 4PV sing 24 n n 
C15 C14 4PV doub 25 n y 
C10 C9 4PV sing 26 n y 
C13 C14 4PV sing 27 n y 
C1 H1 4PV sing 28 n n 
C1 H2 4PV sing 29 n n 
C2 H3 4PV sing 30 n n 
C2 H4 4PV sing 31 n n 
C3 H5 4PV sing 32 n n 
C3 H6 4PV sing 33 n n 
C13 H7 4PV sing 34 n n 
C14 H8 4PV sing 35 n n 
C16 H9 4PV sing 36 n n 
C4 H10 4PV sing 37 n n 
C4 H11 4PV sing 38 n n 
C H13 4PV sing 39 n n 
C H14 4PV sing 40 n n 
C H15 4PV sing 41 n n 
N3 H16 4PV sing 42 n n 
C10 H17 4PV sing 43 n n 
C9 H18 4PV sing 44 n n 
C7 H19 4PV sing 45 n n 
#
_atom_sites.entry_id                     4ZLO 
_atom_sites.fract_transf_matrix[1][1]    0.015745 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005149 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012604 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015992 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 4PV A 1 601 1 4PV LI1 . 
D 3 GOL A 1 602 1 GOL GOL . 
E 4 HOH A 1 701 59 HOH HOH . 
E 4 HOH A 2 702 28 HOH HOH . 
E 4 HOH A 3 703 43 HOH HOH . 
E 4 HOH A 4 704 80 HOH HOH . 
E 4 HOH A 5 705 84 HOH HOH . 
E 4 HOH A 6 706 82 HOH HOH . 
E 4 HOH A 7 707 37 HOH HOH . 
E 4 HOH A 8 708 86 HOH HOH . 
E 4 HOH A 9 709 22 HOH HOH . 
E 4 HOH A 10 710 29 HOH HOH . 
E 4 HOH A 11 711 46 HOH HOH . 
E 4 HOH A 12 712 69 HOH HOH . 
E 4 HOH A 13 713 102 HOH HOH . 
E 4 HOH A 14 714 119 HOH HOH . 
E 4 HOH A 15 715 100 HOH HOH . 
E 4 HOH A 16 716 42 HOH HOH . 
E 4 HOH A 17 717 89 HOH HOH . 
E 4 HOH A 18 718 65 HOH HOH . 
E 4 HOH A 19 719 25 HOH HOH . 
E 4 HOH A 20 720 2 HOH HOH . 
E 4 HOH A 21 721 111 HOH HOH . 
E 4 HOH A 22 722 79 HOH HOH . 
E 4 HOH A 23 723 18 HOH HOH . 
E 4 HOH A 24 724 38 HOH HOH . 
E 4 HOH A 25 725 24 HOH HOH . 
E 4 HOH A 26 726 106 HOH HOH . 
E 4 HOH A 27 727 49 HOH HOH . 
E 4 HOH A 28 728 3 HOH HOH . 
E 4 HOH A 29 729 97 HOH HOH . 
E 4 HOH A 30 730 90 HOH HOH . 
E 4 HOH A 31 731 103 HOH HOH . 
E 4 HOH A 32 732 1 HOH HOH . 
E 4 HOH A 33 733 117 HOH HOH . 
E 4 HOH A 34 734 44 HOH HOH . 
E 4 HOH A 35 735 26 HOH HOH . 
E 4 HOH A 36 736 70 HOH HOH . 
E 4 HOH A 37 737 98 HOH HOH . 
E 4 HOH A 38 738 57 HOH HOH . 
E 4 HOH A 39 739 83 HOH HOH . 
E 4 HOH A 40 740 67 HOH HOH . 
E 4 HOH A 41 741 75 HOH HOH . 
E 4 HOH A 42 742 95 HOH HOH . 
E 4 HOH A 43 743 20 HOH HOH . 
E 4 HOH A 44 744 8 HOH HOH . 
E 4 HOH A 45 745 109 HOH HOH . 
E 4 HOH A 46 746 110 HOH HOH . 
E 4 HOH A 47 747 11 HOH HOH . 
E 4 HOH A 48 748 105 HOH HOH . 
E 4 HOH A 49 749 53 HOH HOH . 
E 4 HOH A 50 750 113 HOH HOH . 
E 4 HOH A 51 751 45 HOH HOH . 
E 4 HOH A 52 752 6 HOH HOH . 
E 4 HOH A 53 753 47 HOH HOH . 
E 4 HOH A 54 754 116 HOH HOH . 
E 4 HOH A 55 755 77 HOH HOH . 
E 4 HOH A 56 756 5 HOH HOH . 
E 4 HOH A 57 757 91 HOH HOH . 
E 4 HOH A 58 758 107 HOH HOH . 
E 4 HOH A 59 759 52 HOH HOH . 
E 4 HOH A 60 760 60 HOH HOH . 
E 4 HOH A 61 761 36 HOH HOH . 
E 4 HOH A 62 762 94 HOH HOH . 
E 4 HOH A 63 763 32 HOH HOH . 
E 4 HOH A 64 764 30 HOH HOH . 
E 4 HOH A 65 765 118 HOH HOH . 
E 4 HOH A 66 766 64 HOH HOH . 
E 4 HOH A 67 767 50 HOH HOH . 
E 4 HOH A 68 768 41 HOH HOH . 
E 4 HOH A 69 769 76 HOH HOH . 
E 4 HOH A 70 770 27 HOH HOH . 
E 4 HOH A 71 771 81 HOH HOH . 
E 4 HOH A 72 772 121 HOH HOH . 
E 4 HOH A 73 773 39 HOH HOH . 
E 4 HOH A 74 774 96 HOH HOH . 
E 4 HOH A 75 775 108 HOH HOH . 
E 4 HOH A 76 776 40 HOH HOH . 
E 4 HOH A 77 777 63 HOH HOH . 
E 4 HOH A 78 778 48 HOH HOH . 
E 4 HOH A 79 779 112 HOH HOH . 
E 4 HOH A 80 780 99 HOH HOH . 
E 4 HOH A 81 781 74 HOH HOH . 
E 4 HOH A 82 782 62 HOH HOH . 
E 4 HOH A 83 783 114 HOH HOH . 
F 4 HOH B 1 601 12 HOH HOH . 
F 4 HOH B 2 602 54 HOH HOH . 
F 4 HOH B 3 603 55 HOH HOH . 
F 4 HOH B 4 604 15 HOH HOH . 
F 4 HOH B 5 605 85 HOH HOH . 
F 4 HOH B 6 606 31 HOH HOH . 
F 4 HOH B 7 607 4 HOH HOH . 
F 4 HOH B 8 608 71 HOH HOH . 
F 4 HOH B 9 609 68 HOH HOH . 
F 4 HOH B 10 610 9 HOH HOH . 
F 4 HOH B 11 611 101 HOH HOH . 
F 4 HOH B 12 612 13 HOH HOH . 
F 4 HOH B 13 613 14 HOH HOH . 
F 4 HOH B 14 614 66 HOH HOH . 
F 4 HOH B 15 615 19 HOH HOH . 
F 4 HOH B 16 616 78 HOH HOH . 
F 4 HOH B 17 617 7 HOH HOH . 
F 4 HOH B 18 618 23 HOH HOH . 
F 4 HOH B 19 619 17 HOH HOH . 
F 4 HOH B 20 620 93 HOH HOH . 
F 4 HOH B 21 621 35 HOH HOH . 
F 4 HOH B 22 622 10 HOH HOH . 
F 4 HOH B 23 623 16 HOH HOH . 
F 4 HOH B 24 624 115 HOH HOH . 
F 4 HOH B 25 625 87 HOH HOH . 
F 4 HOH B 26 626 58 HOH HOH . 
F 4 HOH B 27 627 88 HOH HOH . 
F 4 HOH B 28 628 61 HOH HOH . 
F 4 HOH B 29 629 33 HOH HOH . 
F 4 HOH B 30 630 34 HOH HOH . 
F 4 HOH B 31 631 56 HOH HOH . 
F 4 HOH B 32 632 104 HOH HOH . 
F 4 HOH B 33 633 51 HOH HOH . 
F 4 HOH B 34 634 92 HOH HOH . 
F 4 HOH B 35 635 72 HOH HOH . 
F 4 HOH B 36 636 120 HOH HOH . 
F 4 HOH B 37 637 73 HOH HOH . 
F 4 HOH B 38 638 21 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 4PV . . . C 2 43.055 6.157 -20.794 1 66.7 ? C1 4PV 601 A 1 
HETATM 2 C C2 4PV . . . C 2 42.441 5.179 -19.802 1 64.88 ? C2 4PV 601 A 1 
HETATM 3 C C3 4PV . . . C 2 44.64 4.818 -18.832 1 64.13 ? C3 4PV 601 A 1 
HETATM 4 C C11 4PV . . . C 2 41.114 3.427 -15.181 1 51.98 ? C11 4PV 601 A 1 
HETATM 5 C C12 4PV . . . C 2 43.385 4.164 -15.099 1 53.09 ? C12 4PV 601 A 1 
HETATM 6 C C13 4PV . . . C 2 44.224 4.283 -13.987 1 52.67 ? C13 4PV 601 A 1 
HETATM 7 C C14 4PV . . . C 2 45.082 5.362 -13.861 1 51.32 ? C14 4PV 601 A 1 
HETATM 8 C C15 4PV . . . C 2 45.073 6.314 -14.844 1 54.05 ? C15 4PV 601 A 1 
HETATM 9 C C16 4PV . . . C 2 44.271 6.25 -15.96 1 55.66 ? C16 4PV 601 A 1 
HETATM 10 C C17 4PV . . . C 2 43.422 5.147 -16.111 1 54.6 ? C17 4PV 601 A 1 
HETATM 11 F F1 4PV . . . C 2 45.893 7.39 -14.712 1 55.14 ? F1 4PV 601 A 1 
HETATM 12 C C5 4PV . . . C 2 42.573 4.994 -17.33 1 57.07 ? C5 4PV 601 A 1 
HETATM 13 N N1 4PV . . . C 2 43.232 5.155 -18.56 1 63.46 ? N1 4PV 601 A 1 
HETATM 14 C C4 4PV . . . C 2 45.223 5.805 -19.838 1 65.09 ? C4 4PV 601 A 1 
HETATM 15 N N 4PV . . . C 2 44.447 5.809 -21.078 1 67.51 ? N 4PV 601 A 1 
HETATM 16 C C 4PV . . . C 2 45.025 6.739 -22.051 1 67.53 ? C 4PV 601 A 1 
HETATM 17 N N3 4PV . . . C 2 42.485 3.075 -15.164 1 52.38 ? N3 4PV 601 A 1 
HETATM 18 C C6 4PV . . . C 2 40.604 4.241 -16.212 1 51.77 ? C6 4PV 601 A 1 
HETATM 19 N N2 4PV . . . C 2 41.333 4.644 -17.348 1 54.84 ? N2 4PV 601 A 1 
HETATM 20 C C10 4PV . . . C 2 40.275 2.985 -14.155 1 50.79 ? C10 4PV 601 A 1 
HETATM 21 C C9 4PV . . . C 2 38.942 3.358 -14.134 1 49.58 ? C9 4PV 601 A 1 
HETATM 22 C C8 4PV . . . C 2 38.477 4.169 -15.137 1 48.91 ? C8 4PV 601 A 1 
HETATM 23 F F 4PV . . . C 2 37.184 4.573 -15.091 1 47.38 ? F 4PV 601 A 1 
HETATM 24 C C7 4PV . . . C 2 39.257 4.621 -16.173 1 49.17 ? C7 4PV 601 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           24 
#