data_4ZM9
#
_model_server_result.job_id            e_URymClxAHqrhDaRdJMgQ 
_model_server_result.datetime_utc      '2025-03-09 02:12:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4zm9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"BA","auth_seq_id":403}' 
#
_entry.id    4ZM9 
#
_exptl.entry_id    4ZM9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              189.1 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CITRATE ANION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4ZM9 
_cell.length_a            104.308 
_cell.length_b            111.107 
_cell.length_c            122.517 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ZM9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,K,L,M,N,O,P,DA,EA 1 1 
C,D,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,FA,GA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 O N N 
? 6 BA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O LEU 55 A LEU 55 1_555 E NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? 
metalc ? metalc2 A O GLU 56 A GLU 56 1_555 E NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? 
metalc ? metalc3 A O ASP 58 A ASP 58 1_555 E NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc4 A O PHE 61 A PHE 61 1_555 E NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? 
metalc ? metalc5 A O ALA 63 A ALA 63 1_555 E NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc6 A O CYS 65 A CYS 65 1_555 E NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc7 A OD2 ASP 206 A ASP 199 1_555 L NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? 
metalc ? metalc8 A OG SER 207 A SER 200 1_555 L NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? 
metalc ? metalc9 A O THR 225 A THR 218 1_555 L NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? 
metalc ? metalc10 B O LEU 55 B LEU 55 1_555 M NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? 
metalc ? metalc11 B O GLU 56 B GLU 56 1_555 M NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? 
metalc ? metalc12 B O ASP 58 B ASP 58 1_555 M NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc13 B O PHE 61 B PHE 61 1_555 M NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? 
metalc ? metalc14 B O ALA 63 B ALA 63 1_555 M NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? 
metalc ? metalc15 B O CYS 65 B CYS 65 1_555 M NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc16 C O LEU 55 C LEU 55 1_555 Q NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? 
metalc ? metalc17 C O GLU 56 C GLU 56 1_555 Q NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? 
metalc ? metalc18 C O ASP 58 C ASP 58 1_555 Q NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc19 C O PHE 61 C PHE 61 1_555 Q NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? 
metalc ? metalc20 C O ALA 63 C ALA 63 1_555 Q NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? 
metalc ? metalc21 C O CYS 65 C CYS 65 1_555 Q NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc22 C OD1 ASP 78 C ASP 78 1_555 X NA NA . C NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.036 ? 
metalc ? metalc23 C O ARG 203 C ARG 196 1_555 X NA NA . C NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? 
metalc ? metalc24 C OD2 ASP 206 C ASP 199 1_555 Y NA NA . C NA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? 
metalc ? metalc25 C OG SER 207 C SER 200 1_555 Y NA NA . C NA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? 
metalc ? metalc26 C O THR 225 C THR 218 1_555 Y NA NA . C NA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? 
metalc ? metalc27 X NA NA . C NA 408 1_555 FA O HOH . C HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.147 ? 
metalc ? metalc28 D O LEU 55 D LEU 55 1_555 Z NA NA . D NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? 
metalc ? metalc29 D O GLU 56 D GLU 56 1_555 Z NA NA . D NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? 
metalc ? metalc30 D O ASP 58 D ASP 58 1_555 Z NA NA . D NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc31 D O PHE 61 D PHE 61 1_555 Z NA NA . D NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? 
metalc ? metalc32 D O ALA 63 D ALA 63 1_555 Z NA NA . D NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? 
metalc ? metalc33 D O CYS 65 D CYS 65 1_555 Z NA NA . D NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
#
_chem_comp.formula           'C6 H5 O7 -3' 
_chem_comp.formula_weight    189.1 
_chem_comp.id                FLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CITRATE ANION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAC CA FLC sing 109 n n 
CAC OA1 FLC doub 110 n n 
CAC OA2 FLC sing 111 n n 
CA CB FLC sing 112 n n 
CA HA1 FLC sing 113 n n 
CA HA2 FLC sing 114 n n 
CB CBC FLC sing 115 n n 
CB CG FLC sing 116 n n 
CB OHB FLC sing 117 n n 
CBC OB1 FLC doub 118 n n 
CBC OB2 FLC sing 119 n n 
CG CGC FLC sing 120 n n 
CG HG1 FLC sing 121 n n 
CG HG2 FLC sing 122 n n 
CGC OG1 FLC doub 123 n n 
CGC OG2 FLC sing 124 n n 
OHB HOB FLC sing 125 n n 
#
_atom_sites.entry_id                     4ZM9 
_atom_sites.fract_transf_matrix[1][1]    0.009587 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008162 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NA A 1 401 1 NA NA . 
F 3 GLY A 1 402 1 GLY GLY . 
G 4 BME A 1 403 1 BME BME . 
H 4 BME A 1 404 2 BME BME . 
I 4 BME A 1 405 5 BME BME . 
J 4 BME A 1 406 10 BME BME . 
K 5 DTT A 1 407 2 DTT DTT . 
L 2 NA A 1 408 1 NA NA . 
M 2 NA B 1 401 1 NA NA . 
N 3 GLY B 1 402 2 GLY GLY . 
O 6 FLC B 1 403 1 FLC FLC . 
P 4 BME B 1 404 3 BME BME . 
Q 2 NA C 1 401 1 NA NA . 
R 3 GLY C 1 402 3 GLY GLY . 
S 4 BME C 1 403 6 BME BME . 
T 4 BME C 1 404 7 BME BME . 
U 4 BME C 1 405 8 BME BME . 
V 4 BME C 1 406 9 BME BME . 
W 5 DTT C 1 407 1 DTT DTT . 
X 2 NA C 1 408 1 NA NA . 
Y 2 NA C 1 409 1 NA NA . 
Z 2 NA D 1 401 1 NA NA . 
AA 3 GLY D 1 402 4 GLY GLY . 
BA 6 FLC D 1 403 2 FLC FLC . 
CA 4 BME D 1 404 4 BME BME . 
DA 7 HOH A 1 501 38 HOH HOH . 
DA 7 HOH A 2 502 68 HOH HOH . 
DA 7 HOH A 3 503 73 HOH HOH . 
DA 7 HOH A 4 504 47 HOH HOH . 
DA 7 HOH A 5 505 67 HOH HOH . 
DA 7 HOH A 6 506 2 HOH HOH . 
DA 7 HOH A 7 507 20 HOH HOH . 
DA 7 HOH A 8 508 11 HOH HOH . 
DA 7 HOH A 9 509 26 HOH HOH . 
DA 7 HOH A 10 510 13 HOH HOH . 
DA 7 HOH A 11 511 43 HOH HOH . 
DA 7 HOH A 12 512 69 HOH HOH . 
DA 7 HOH A 13 513 7 HOH HOH . 
DA 7 HOH A 14 514 14 HOH HOH . 
DA 7 HOH A 15 515 24 HOH HOH . 
DA 7 HOH A 16 516 4 HOH HOH . 
DA 7 HOH A 17 517 74 HOH HOH . 
DA 7 HOH A 18 518 23 HOH HOH . 
DA 7 HOH A 19 519 63 HOH HOH . 
DA 7 HOH A 20 520 33 HOH HOH . 
DA 7 HOH A 21 521 71 HOH HOH . 
EA 7 HOH B 1 501 70 HOH HOH . 
EA 7 HOH B 2 502 18 HOH HOH . 
EA 7 HOH B 3 503 19 HOH HOH . 
EA 7 HOH B 4 504 34 HOH HOH . 
EA 7 HOH B 5 505 48 HOH HOH . 
EA 7 HOH B 6 506 54 HOH HOH . 
EA 7 HOH B 7 507 31 HOH HOH . 
EA 7 HOH B 8 508 36 HOH HOH . 
EA 7 HOH B 9 509 16 HOH HOH . 
EA 7 HOH B 10 510 44 HOH HOH . 
EA 7 HOH B 11 511 57 HOH HOH . 
EA 7 HOH B 12 512 5 HOH HOH . 
EA 7 HOH B 13 513 56 HOH HOH . 
EA 7 HOH B 14 514 76 HOH HOH . 
EA 7 HOH B 15 515 66 HOH HOH . 
EA 7 HOH B 16 516 30 HOH HOH . 
EA 7 HOH B 17 517 15 HOH HOH . 
EA 7 HOH B 18 518 41 HOH HOH . 
EA 7 HOH B 19 519 51 HOH HOH . 
FA 7 HOH C 1 501 52 HOH HOH . 
FA 7 HOH C 2 502 12 HOH HOH . 
FA 7 HOH C 3 503 42 HOH HOH . 
FA 7 HOH C 4 504 22 HOH HOH . 
FA 7 HOH C 5 505 1 HOH HOH . 
FA 7 HOH C 6 506 28 HOH HOH . 
FA 7 HOH C 7 507 6 HOH HOH . 
FA 7 HOH C 8 508 9 HOH HOH . 
FA 7 HOH C 9 509 58 HOH HOH . 
FA 7 HOH C 10 510 72 HOH HOH . 
FA 7 HOH C 11 511 49 HOH HOH . 
FA 7 HOH C 12 512 35 HOH HOH . 
FA 7 HOH C 13 513 46 HOH HOH . 
FA 7 HOH C 14 514 27 HOH HOH . 
FA 7 HOH C 15 515 75 HOH HOH . 
GA 7 HOH D 1 501 50 HOH HOH . 
GA 7 HOH D 2 502 59 HOH HOH . 
GA 7 HOH D 3 503 32 HOH HOH . 
GA 7 HOH D 4 504 45 HOH HOH . 
GA 7 HOH D 5 505 65 HOH HOH . 
GA 7 HOH D 6 506 17 HOH HOH . 
GA 7 HOH D 7 507 21 HOH HOH . 
GA 7 HOH D 8 508 39 HOH HOH . 
GA 7 HOH D 9 509 29 HOH HOH . 
GA 7 HOH D 10 510 40 HOH HOH . 
GA 7 HOH D 11 511 37 HOH HOH . 
GA 7 HOH D 12 512 8 HOH HOH . 
GA 7 HOH D 13 513 3 HOH HOH . 
GA 7 HOH D 14 514 10 HOH HOH . 
GA 7 HOH D 15 515 60 HOH HOH . 
GA 7 HOH D 16 516 77 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAC FLC . . . BA 6 59.011 71.026 17.079 1 56.79 ? CAC FLC 403 D 1 
HETATM 2 C CA FLC . . . BA 6 58.272 71.188 15.767 1 60.16 ? CA FLC 403 D 1 
HETATM 3 C CB FLC . . . BA 6 59.095 70.41 14.745 1 62.86 ? CB FLC 403 D 1 
HETATM 4 C CBC FLC . . . BA 6 58.328 69.873 13.515 1 65.69 ? CBC FLC 403 D 1 
HETATM 5 C CG FLC . . . BA 6 60.291 71.33 14.441 1 64.86 ? CG FLC 403 D 1 
HETATM 6 C CGC FLC . . . BA 6 61.514 70.48 14.715 1 59 ? CGC FLC 403 D 1 
HETATM 7 O OA1 FLC . . . BA 6 59.795 71.874 17.532 1 63.41 ? OA1 FLC 403 D 1 
HETATM 8 O OA2 FLC . . . BA 6 58.829 69.987 17.698 1 64.6 ? OA2 FLC 403 D 1 
HETATM 9 O OB1 FLC . . . BA 6 58.012 70.629 12.553 1 69.43 ? OB1 FLC 403 D 1 
HETATM 10 O OB2 FLC . . . BA 6 58.015 68.647 13.465 1 59.75 ? OB2 FLC 403 D 1 
HETATM 11 O OG1 FLC . . . BA 6 61.616 69.527 13.94 1 57.78 ? OG1 FLC 403 D 1 
HETATM 12 O OG2 FLC . . . BA 6 62.337 70.697 15.636 1 49.32 ? OG2 FLC 403 D 1 
HETATM 13 O OHB FLC . . . BA 6 59.597 69.257 15.423 1 57.37 ? OHB FLC 403 D 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           13 
#