data_4ZMG # _model_server_result.job_id uUVafV9NgtXdF4dE9yjVEw _model_server_result.datetime_utc '2024-11-08 16:42:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zmg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4ZMG # _exptl.entry_id 4ZMG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZMG _cell.length_a 91.02 _cell.length_b 91.02 _cell.length_c 122.79 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZMG _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 116 n n N1 C10 FMN doub 117 n n C2 O2 FMN doub 118 n n C2 N3 FMN sing 119 n n N3 C4 FMN sing 120 n n N3 HN3 FMN sing 121 n n C4 O4 FMN doub 122 n n C4 C4A FMN sing 123 n n C4A N5 FMN doub 124 n n C4A C10 FMN sing 125 n n N5 C5A FMN sing 126 n n C5A C6 FMN doub 127 n y C5A C9A FMN sing 128 n y C6 C7 FMN sing 129 n y C6 H6 FMN sing 130 n n C7 C7M FMN sing 131 n n C7 C8 FMN doub 132 n y C7M HM71 FMN sing 133 n n C7M HM72 FMN sing 134 n n C7M HM73 FMN sing 135 n n C8 C8M FMN sing 136 n n C8 C9 FMN sing 137 n y C8M HM81 FMN sing 138 n n C8M HM82 FMN sing 139 n n C8M HM83 FMN sing 140 n n C9 C9A FMN doub 141 n y C9 H9 FMN sing 142 n n C9A N10 FMN sing 143 n n N10 C10 FMN sing 144 n n N10 C1' FMN sing 145 n n C1' C2' FMN sing 146 n n C1' "H1'1" FMN sing 147 n n C1' "H1'2" FMN sing 148 n n C2' O2' FMN sing 149 n n C2' C3' FMN sing 150 n n C2' H2' FMN sing 151 n n O2' HO2' FMN sing 152 n n C3' O3' FMN sing 153 n n C3' C4' FMN sing 154 n n C3' H3' FMN sing 155 n n O3' HO3' FMN sing 156 n n C4' O4' FMN sing 157 n n C4' C5' FMN sing 158 n n C4' H4' FMN sing 159 n n O4' HO4' FMN sing 160 n n C5' O5' FMN sing 161 n n C5' "H5'1" FMN sing 162 n n C5' "H5'2" FMN sing 163 n n O5' P FMN sing 164 n n P O1P FMN doub 165 n n P O2P FMN sing 166 n n P O3P FMN sing 167 n n O2P HOP2 FMN sing 168 n n O3P HOP3 FMN sing 169 n n # _atom_sites.entry_id 4ZMG _atom_sites.fract_transf_matrix[1][1] 0.010987 _atom_sites.fract_transf_matrix[1][2] 0.006343 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012686 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008144 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 398 FMN FMN . C 3 ORO A 1 402 399 ORO ORO . D 4 4R5 A 1 403 1 4R5 338 . E 5 SO4 A 1 404 1 SO4 SO4 . F 5 SO4 A 1 405 2 SO4 SO4 . G 6 ACT A 1 406 601 ACT ACT . H 7 HOH A 1 501 102 HOH HOH . H 7 HOH A 2 502 111 HOH HOH . H 7 HOH A 3 503 71 HOH HOH . H 7 HOH A 4 504 123 HOH HOH . H 7 HOH A 5 505 22 HOH HOH . H 7 HOH A 6 506 119 HOH HOH . H 7 HOH A 7 507 45 HOH HOH . H 7 HOH A 8 508 89 HOH HOH . H 7 HOH A 9 509 13 HOH HOH . H 7 HOH A 10 510 101 HOH HOH . H 7 HOH A 11 511 124 HOH HOH . H 7 HOH A 12 512 43 HOH HOH . H 7 HOH A 13 513 72 HOH HOH . H 7 HOH A 14 514 115 HOH HOH . H 7 HOH A 15 515 79 HOH HOH . H 7 HOH A 16 516 139 HOH HOH . H 7 HOH A 17 517 11 HOH HOH . H 7 HOH A 18 518 57 HOH HOH . H 7 HOH A 19 519 44 HOH HOH . H 7 HOH A 20 520 129 HOH HOH . H 7 HOH A 21 521 73 HOH HOH . H 7 HOH A 22 522 4 HOH HOH . H 7 HOH A 23 523 76 HOH HOH . H 7 HOH A 24 524 130 HOH HOH . H 7 HOH A 25 525 25 HOH HOH . H 7 HOH A 26 526 31 HOH HOH . H 7 HOH A 27 527 36 HOH HOH . H 7 HOH A 28 528 41 HOH HOH . H 7 HOH A 29 529 14 HOH HOH . H 7 HOH A 30 530 133 HOH HOH . H 7 HOH A 31 531 38 HOH HOH . H 7 HOH A 32 532 93 HOH HOH . H 7 HOH A 33 533 122 HOH HOH . H 7 HOH A 34 534 6 HOH HOH . H 7 HOH A 35 535 12 HOH HOH . H 7 HOH A 36 536 30 HOH HOH . H 7 HOH A 37 537 29 HOH HOH . H 7 HOH A 38 538 95 HOH HOH . H 7 HOH A 39 539 8 HOH HOH . H 7 HOH A 40 540 131 HOH HOH . H 7 HOH A 41 541 60 HOH HOH . H 7 HOH A 42 542 33 HOH HOH . H 7 HOH A 43 543 21 HOH HOH . H 7 HOH A 44 544 114 HOH HOH . H 7 HOH A 45 545 15 HOH HOH . H 7 HOH A 46 546 136 HOH HOH . H 7 HOH A 47 547 82 HOH HOH . H 7 HOH A 48 548 83 HOH HOH . H 7 HOH A 49 549 17 HOH HOH . H 7 HOH A 50 550 125 HOH HOH . H 7 HOH A 51 551 100 HOH HOH . H 7 HOH A 52 552 52 HOH HOH . H 7 HOH A 53 553 135 HOH HOH . H 7 HOH A 54 554 37 HOH HOH . H 7 HOH A 55 555 27 HOH HOH . H 7 HOH A 56 556 127 HOH HOH . H 7 HOH A 57 557 112 HOH HOH . H 7 HOH A 58 558 53 HOH HOH . H 7 HOH A 59 559 68 HOH HOH . H 7 HOH A 60 560 92 HOH HOH . H 7 HOH A 61 561 128 HOH HOH . H 7 HOH A 62 562 75 HOH HOH . H 7 HOH A 63 563 134 HOH HOH . H 7 HOH A 64 564 85 HOH HOH . H 7 HOH A 65 565 40 HOH HOH . H 7 HOH A 66 566 78 HOH HOH . H 7 HOH A 67 567 64 HOH HOH . H 7 HOH A 68 568 56 HOH HOH . H 7 HOH A 69 569 48 HOH HOH . H 7 HOH A 70 570 26 HOH HOH . H 7 HOH A 71 571 90 HOH HOH . H 7 HOH A 72 572 10 HOH HOH . H 7 HOH A 73 573 62 HOH HOH . H 7 HOH A 74 574 86 HOH HOH . H 7 HOH A 75 575 47 HOH HOH . H 7 HOH A 76 576 39 HOH HOH . H 7 HOH A 77 577 81 HOH HOH . H 7 HOH A 78 578 74 HOH HOH . H 7 HOH A 79 579 108 HOH HOH . H 7 HOH A 80 580 32 HOH HOH . H 7 HOH A 81 581 66 HOH HOH . H 7 HOH A 82 582 120 HOH HOH . H 7 HOH A 83 583 51 HOH HOH . H 7 HOH A 84 584 109 HOH HOH . H 7 HOH A 85 585 144 HOH HOH . H 7 HOH A 86 586 49 HOH HOH . H 7 HOH A 87 587 16 HOH HOH . H 7 HOH A 88 588 69 HOH HOH . H 7 HOH A 89 589 104 HOH HOH . H 7 HOH A 90 590 59 HOH HOH . H 7 HOH A 91 591 132 HOH HOH . H 7 HOH A 92 592 77 HOH HOH . H 7 HOH A 93 593 58 HOH HOH . H 7 HOH A 94 594 55 HOH HOH . H 7 HOH A 95 595 87 HOH HOH . H 7 HOH A 96 596 63 HOH HOH . H 7 HOH A 97 597 5 HOH HOH . H 7 HOH A 98 598 107 HOH HOH . H 7 HOH A 99 599 46 HOH HOH . H 7 HOH A 100 600 19 HOH HOH . H 7 HOH A 101 601 67 HOH HOH . H 7 HOH A 102 602 42 HOH HOH . H 7 HOH A 103 603 110 HOH HOH . H 7 HOH A 104 604 142 HOH HOH . H 7 HOH A 105 605 7 HOH HOH . H 7 HOH A 106 606 91 HOH HOH . H 7 HOH A 107 607 3 HOH HOH . H 7 HOH A 108 608 54 HOH HOH . H 7 HOH A 109 609 96 HOH HOH . H 7 HOH A 110 610 117 HOH HOH . H 7 HOH A 111 611 20 HOH HOH . H 7 HOH A 112 612 2 HOH HOH . H 7 HOH A 113 613 105 HOH HOH . H 7 HOH A 114 614 9 HOH HOH . H 7 HOH A 115 615 116 HOH HOH . H 7 HOH A 116 616 28 HOH HOH . H 7 HOH A 117 617 65 HOH HOH . H 7 HOH A 118 618 18 HOH HOH . H 7 HOH A 119 619 35 HOH HOH . H 7 HOH A 120 620 23 HOH HOH . H 7 HOH A 121 621 99 HOH HOH . H 7 HOH A 122 622 143 HOH HOH . H 7 HOH A 123 623 113 HOH HOH . H 7 HOH A 124 624 88 HOH HOH . H 7 HOH A 125 625 1 HOH HOH . H 7 HOH A 126 626 34 HOH HOH . H 7 HOH A 127 627 70 HOH HOH . H 7 HOH A 128 628 137 HOH HOH . H 7 HOH A 129 629 61 HOH HOH . H 7 HOH A 130 630 118 HOH HOH . H 7 HOH A 131 631 138 HOH HOH . H 7 HOH A 132 632 121 HOH HOH . H 7 HOH A 133 633 50 HOH HOH . H 7 HOH A 134 634 140 HOH HOH . H 7 HOH A 135 635 24 HOH HOH . H 7 HOH A 136 636 126 HOH HOH . H 7 HOH A 137 637 97 HOH HOH . H 7 HOH A 138 638 94 HOH HOH . H 7 HOH A 139 639 98 HOH HOH . H 7 HOH A 140 640 106 HOH HOH . H 7 HOH A 141 641 141 HOH HOH . H 7 HOH A 142 642 84 HOH HOH . H 7 HOH A 143 643 103 HOH HOH . H 7 HOH A 144 644 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 -35.018 24.346 -11.727 1 7.81 ? N1 FMN 401 A 1 HETATM 2 C C2 FMN . . . B 2 -35.826 24.292 -10.649 1 8.1 ? C2 FMN 401 A 1 HETATM 3 O O2 FMN . . . B 2 -35.416 24.772 -9.58 1 8.84 ? O2 FMN 401 A 1 HETATM 4 N N3 FMN . . . B 2 -37.073 23.753 -10.679 1 8.06 ? N3 FMN 401 A 1 HETATM 5 C C4 FMN . . . B 2 -37.607 23.222 -11.782 1 8.07 ? C4 FMN 401 A 1 HETATM 6 O O4 FMN . . . B 2 -38.758 22.717 -11.827 1 8.14 ? O4 FMN 401 A 1 HETATM 7 C C4A FMN . . . B 2 -36.806 23.23 -13.009 1 7.94 ? C4A FMN 401 A 1 HETATM 8 N N5 FMN . . . B 2 -37.29 22.723 -14.179 1 7.96 ? N5 FMN 401 A 1 HETATM 9 C C5A FMN . . . B 2 -36.502 22.727 -15.3 1 8.02 ? C5A FMN 401 A 1 HETATM 10 C C6 FMN . . . B 2 -36.93 22.172 -16.513 1 8.17 ? C6 FMN 401 A 1 HETATM 11 C C7 FMN . . . B 2 -36.095 22.182 -17.635 1 8.02 ? C7 FMN 401 A 1 HETATM 12 C C7M FMN . . . B 2 -36.576 21.589 -18.958 1 8.52 ? C7M FMN 401 A 1 HETATM 13 C C8 FMN . . . B 2 -34.724 22.742 -17.553 1 8.1 ? C8 FMN 401 A 1 HETATM 14 C C8M FMN . . . B 2 -33.8 22.732 -18.758 1 8.23 ? C8M FMN 401 A 1 HETATM 15 C C9 FMN . . . B 2 -34.286 23.275 -16.365 1 7.66 ? C9 FMN 401 A 1 HETATM 16 C C9A FMN . . . B 2 -35.117 23.27 -15.237 1 7.62 ? C9A FMN 401 A 1 HETATM 17 N N10 FMN . . . B 2 -34.634 23.814 -14.033 1 7.71 ? N10 FMN 401 A 1 HETATM 18 C C10 FMN . . . B 2 -35.439 23.821 -12.897 1 7.82 ? C10 FMN 401 A 1 HETATM 19 C C1' FMN . . . B 2 -33.296 24.402 -13.966 1 7.34 ? C1' FMN 401 A 1 HETATM 20 C C2' FMN . . . B 2 -32.194 23.385 -13.731 1 7.01 ? C2' FMN 401 A 1 HETATM 21 O O2' FMN . . . B 2 -32.391 22.843 -12.43 1 6.97 ? O2' FMN 401 A 1 HETATM 22 C C3' FMN . . . B 2 -30.828 24.092 -13.791 1 6.82 ? C3' FMN 401 A 1 HETATM 23 O O3' FMN . . . B 2 -30.765 25.108 -12.759 1 6.82 ? O3' FMN 401 A 1 HETATM 24 C C4' FMN . . . B 2 -30.565 24.785 -15.142 1 6.79 ? C4' FMN 401 A 1 HETATM 25 O O4' FMN . . . B 2 -31.153 24.051 -16.239 1 6.69 ? O4' FMN 401 A 1 HETATM 26 C C5' FMN . . . B 2 -29.052 25.001 -15.381 1 6.95 ? C5' FMN 401 A 1 HETATM 27 O O5' FMN . . . B 2 -28.401 23.718 -15.485 1 6.82 ? O5' FMN 401 A 1 HETATM 28 P P FMN . . . B 2 -28.062 23.01 -16.9 1 7.5 ? P FMN 401 A 1 HETATM 29 O O1P FMN . . . B 2 -29.349 22.507 -17.5 1 7.72 ? O1P FMN 401 A 1 HETATM 30 O O2P FMN . . . B 2 -27.07 21.931 -16.556 1 7.45 ? O2P FMN 401 A 1 HETATM 31 O O3P FMN . . . B 2 -27.399 24.077 -17.757 1 7.53 ? O3P FMN 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #