data_4ZMN # _model_server_result.job_id obKnilA8EUK22SFWK6-Xdg _model_server_result.datetime_utc '2025-09-17 08:52:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zmn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4ZMN # _exptl.entry_id 4ZMN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZMN _cell.length_a 108.98 _cell.length_b 108.98 _cell.length_c 93.16 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZMN _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 11 A GLU 11 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc2 A OE2 GLU 11 A GLU 11 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc3 A O ARG 30 A ARG 30 1_555 E CA CA . A CA 304 4_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc4 A OD1 ASP 67 A ASP 67 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc5 A OE1 GLU 69 A GLU 69 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc6 A OE1 GLU 69 A GLU 69 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? metalc ? metalc7 A OE2 GLU 69 A GLU 69 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc8 A OD1 ASP 100 A ASP 100 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc9 A O GLN 101 A GLN 101 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc10 A OD1 ASN 102 A ASN 102 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc11 A OD2 ASP 103 A ASP 103 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc12 A OD1 ASP 103 A ASP 103 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc13 A O HIS 104 A HIS 104 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc14 A OD1 ASP 134 A ASP 134 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc15 A OD2 ASP 134 A ASP 134 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc16 A OD2 ASP 136 A ASP 136 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc17 A OD1 ASP 136 A ASP 136 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc18 A O ASN 143 A ASN 143 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc19 A OD2 ASP 195 A ASP 195 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc20 A OD2 ASP 199 A ASP 199 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc21 B CA CA . A CA 301 1_555 G O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc22 B CA CA . A CA 301 1_555 G O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc23 E CA CA . A CA 304 1_555 G O HOH . A HOH 405 4_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc24 E CA CA . A CA 304 1_555 G O HOH . A HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc25 E CA CA . A CA 304 1_555 G O HOH . A HOH 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4ZMN _atom_sites.fract_transf_matrix[1][1] 0.009176 _atom_sites.fract_transf_matrix[1][2] 0.005298 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010596 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010734 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 1 CA CA . C 2 CA A 1 302 2 CA CA . D 2 CA A 1 303 3 CA CA . E 2 CA A 1 304 4 CA CA . F 3 GOL A 1 305 11 GOL GOL . G 4 HOH A 1 401 18 HOH HOH . G 4 HOH A 2 402 34 HOH HOH . G 4 HOH A 3 403 27 HOH HOH . G 4 HOH A 4 404 7 HOH HOH . G 4 HOH A 5 405 38 HOH HOH . G 4 HOH A 6 406 4 HOH HOH . G 4 HOH A 7 407 10 HOH HOH . G 4 HOH A 8 408 12 HOH HOH . G 4 HOH A 9 409 11 HOH HOH . G 4 HOH A 10 410 23 HOH HOH . G 4 HOH A 11 411 1 HOH HOH . G 4 HOH A 12 412 2 HOH HOH . G 4 HOH A 13 413 24 HOH HOH . G 4 HOH A 14 414 32 HOH HOH . G 4 HOH A 15 415 26 HOH HOH . G 4 HOH A 16 416 33 HOH HOH . G 4 HOH A 17 417 19 HOH HOH . G 4 HOH A 18 418 37 HOH HOH . G 4 HOH A 19 419 29 HOH HOH . G 4 HOH A 20 420 35 HOH HOH . G 4 HOH A 21 421 5 HOH HOH . G 4 HOH A 22 422 6 HOH HOH . G 4 HOH A 23 423 14 HOH HOH . G 4 HOH A 24 424 9 HOH HOH . G 4 HOH A 25 425 25 HOH HOH . G 4 HOH A 26 426 21 HOH HOH . G 4 HOH A 27 427 31 HOH HOH . G 4 HOH A 28 428 22 HOH HOH . G 4 HOH A 29 429 16 HOH HOH . G 4 HOH A 30 430 8 HOH HOH . G 4 HOH A 31 431 13 HOH HOH . G 4 HOH A 32 432 30 HOH HOH . G 4 HOH A 33 433 17 HOH HOH . G 4 HOH A 34 434 20 HOH HOH . G 4 HOH A 35 435 3 HOH HOH . G 4 HOH A 36 436 15 HOH HOH . G 4 HOH A 37 437 36 HOH HOH . G 4 HOH A 38 438 28 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 39.835 _atom_site.Cartn_y 15.191 _atom_site.Cartn_z -2.645 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 36.24 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 1 #