data_4ZND # _model_server_result.job_id b4O-pvxHAji0raw_mECAhA _model_server_result.datetime_utc '2024-10-28 02:30:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4znd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 4ZND # _exptl.entry_id 4ZND _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZND _cell.length_a 94.795 _cell.length_b 94.795 _cell.length_c 233.668 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZND _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 189 A CYS 186 1_555 A SG CYS 219 A CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc1 A OD2 ASP 51 A ASP 48 1_555 E K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? metalc ? metalc2 A O ASN 96 A ASN 93 1_555 E K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc3 A OD1 ASN 96 A ASN 93 1_555 E K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc4 A OE2 GLU 346 A GLU 343 1_555 E K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc5 C O3 PO4 . A PO4 502 1_555 E K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc6 C O4 PO4 . A PO4 502 1_555 E K K . A K 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? metalc ? metalc7 E K K . A K 504 1_555 G O HOH . A HOH 631 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.958 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 269 n n P O2 PO4 sing 270 n n P O3 PO4 sing 271 n n P O4 PO4 sing 272 n n # _atom_sites.entry_id 4ZND _atom_sites.fract_transf_matrix[1][1] 0.010549 _atom_sites.fract_transf_matrix[1][2] 0.006091 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012181 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00428 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 S3P A 1 501 1 S3P S3P . C 3 PO4 A 1 502 1 PO4 PO4 . D 3 PO4 A 1 503 2 PO4 PO4 . E 4 K A 1 504 1 K K . F 5 BME A 1 505 1 BME BME . G 6 HOH A 1 601 98 HOH HOH . G 6 HOH A 2 602 145 HOH HOH . G 6 HOH A 3 603 136 HOH HOH . G 6 HOH A 4 604 44 HOH HOH . G 6 HOH A 5 605 65 HOH HOH . G 6 HOH A 6 606 17 HOH HOH . G 6 HOH A 7 607 143 HOH HOH . G 6 HOH A 8 608 41 HOH HOH . G 6 HOH A 9 609 120 HOH HOH . G 6 HOH A 10 610 149 HOH HOH . G 6 HOH A 11 611 6 HOH HOH . G 6 HOH A 12 612 4 HOH HOH . G 6 HOH A 13 613 19 HOH HOH . G 6 HOH A 14 614 83 HOH HOH . G 6 HOH A 15 615 52 HOH HOH . G 6 HOH A 16 616 43 HOH HOH . G 6 HOH A 17 617 9 HOH HOH . G 6 HOH A 18 618 121 HOH HOH . G 6 HOH A 19 619 12 HOH HOH . G 6 HOH A 20 620 14 HOH HOH . G 6 HOH A 21 621 97 HOH HOH . G 6 HOH A 22 622 68 HOH HOH . G 6 HOH A 23 623 37 HOH HOH . G 6 HOH A 24 624 74 HOH HOH . G 6 HOH A 25 625 144 HOH HOH . G 6 HOH A 26 626 31 HOH HOH . G 6 HOH A 27 627 147 HOH HOH . G 6 HOH A 28 628 11 HOH HOH . G 6 HOH A 29 629 40 HOH HOH . G 6 HOH A 30 630 27 HOH HOH . G 6 HOH A 31 631 81 HOH HOH . G 6 HOH A 32 632 62 HOH HOH . G 6 HOH A 33 633 38 HOH HOH . G 6 HOH A 34 634 13 HOH HOH . G 6 HOH A 35 635 59 HOH HOH . G 6 HOH A 36 636 23 HOH HOH . G 6 HOH A 37 637 138 HOH HOH . G 6 HOH A 38 638 30 HOH HOH . G 6 HOH A 39 639 75 HOH HOH . G 6 HOH A 40 640 93 HOH HOH . G 6 HOH A 41 641 101 HOH HOH . G 6 HOH A 42 642 78 HOH HOH . G 6 HOH A 43 643 90 HOH HOH . G 6 HOH A 44 644 33 HOH HOH . G 6 HOH A 45 645 36 HOH HOH . G 6 HOH A 46 646 156 HOH HOH . G 6 HOH A 47 647 47 HOH HOH . G 6 HOH A 48 648 155 HOH HOH . G 6 HOH A 49 649 88 HOH HOH . G 6 HOH A 50 650 46 HOH HOH . G 6 HOH A 51 651 86 HOH HOH . G 6 HOH A 52 652 55 HOH HOH . G 6 HOH A 53 653 89 HOH HOH . G 6 HOH A 54 654 152 HOH HOH . G 6 HOH A 55 655 42 HOH HOH . G 6 HOH A 56 656 22 HOH HOH . G 6 HOH A 57 657 39 HOH HOH . G 6 HOH A 58 658 15 HOH HOH . G 6 HOH A 59 659 53 HOH HOH . G 6 HOH A 60 660 70 HOH HOH . G 6 HOH A 61 661 99 HOH HOH . G 6 HOH A 62 662 72 HOH HOH . G 6 HOH A 63 663 28 HOH HOH . G 6 HOH A 64 664 49 HOH HOH . G 6 HOH A 65 665 61 HOH HOH . G 6 HOH A 66 666 26 HOH HOH . G 6 HOH A 67 667 35 HOH HOH . G 6 HOH A 68 668 56 HOH HOH . G 6 HOH A 69 669 87 HOH HOH . G 6 HOH A 70 670 60 HOH HOH . G 6 HOH A 71 671 69 HOH HOH . G 6 HOH A 72 672 92 HOH HOH . G 6 HOH A 73 673 107 HOH HOH . G 6 HOH A 74 674 154 HOH HOH . G 6 HOH A 75 675 148 HOH HOH . G 6 HOH A 76 676 73 HOH HOH . G 6 HOH A 77 677 157 HOH HOH . G 6 HOH A 78 678 100 HOH HOH . G 6 HOH A 79 679 51 HOH HOH . G 6 HOH A 80 680 84 HOH HOH . G 6 HOH A 81 681 151 HOH HOH . G 6 HOH A 82 682 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 3 0.942 33.576 -27.07 1 110.02 ? P PO4 503 A 1 HETATM 2 O O1 PO4 . . . D 3 -0.157 32.879 -27.843 1 124.93 ? O1 PO4 503 A 1 HETATM 3 O O2 PO4 . . . D 3 0.882 35.082 -27.261 1 99.65 ? O2 PO4 503 A 1 HETATM 4 O O3 PO4 . . . D 3 2.273 32.949 -27.471 1 83 ? O3 PO4 503 A 1 HETATM 5 O O4 PO4 . . . D 3 0.686 33.394 -25.605 1 122.4 ? O4 PO4 503 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 368 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #