data_4ZO1 # _model_server_result.job_id yAVLYZkYftLrphDxvEjlpw _model_server_result.datetime_utc '2024-11-25 11:02:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zo1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":500}' # _entry.id 4ZO1 # _exptl.entry_id 4ZO1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 650.973 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3,5,3'TRIIODOTHYRONINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ZO1 _cell.length_a 63.252 _cell.length_b 63.252 _cell.length_c 225.806 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZO1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 39 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 269 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 39 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 269 _struct_conn.ptnr2_symmetry 6_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.031 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C15 H12 I3 N O4' _chem_comp.formula_weight 650.973 _chem_comp.id T3 _chem_comp.mon_nstd_flag . _chem_comp.name "3,5,3'TRIIODOTHYRONINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'T3;THYROID HORMONE;LIOTHYRONINE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C3 T3 doub 288 n y C1 C11 T3 sing 289 n y C1 C13 T3 sing 290 n n C2 C4 T3 doub 291 n y C2 C12 T3 sing 292 n y C2 O2 T3 sing 293 n n C3 C5 T3 sing 294 n y C3 HC3 T3 sing 295 n n C4 C6 T3 sing 296 n y C4 HC4 T3 sing 297 n n C5 C7 T3 doub 298 n y C5 I1 T3 sing 299 n n C6 C8 T3 doub 300 n y C6 I2 T3 sing 301 n n C7 C9 T3 sing 302 n y C7 O2 T3 sing 303 n n C8 C10 T3 sing 304 n y C8 O1 T3 sing 305 n n C9 C11 T3 doub 306 n y C9 I3 T3 sing 307 n n C10 C12 T3 doub 308 n y C10 HC10 T3 sing 309 n n C11 HC11 T3 sing 310 n n C12 HC12 T3 sing 311 n n C13 CA T3 sing 312 n n C13 H131 T3 sing 313 n n C13 H132 T3 sing 314 n n CA C T3 sing 315 n n CA N T3 sing 316 n n CA HA T3 sing 317 n n C OXT T3 sing 318 n n C O T3 doub 319 n n N H2 T3 sing 320 n n N H T3 sing 321 n n O1 HO1 T3 sing 322 n n OXT HXT T3 sing 323 n n # _atom_sites.entry_id 4ZO1 _atom_sites.fract_transf_matrix[1][1] 0.01581 _atom_sites.fract_transf_matrix[1][2] 0.009128 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018256 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004429 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id T3 _pdbx_nonpoly_scheme.pdb_strand_id X _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 500 _pdbx_nonpoly_scheme.auth_seq_num 500 _pdbx_nonpoly_scheme.pdb_mon_id T3 _pdbx_nonpoly_scheme.auth_mon_id T3 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 T3 . . . D 4 -13.554 10.808 14.746 1 94.94 ? C1 T3 500 X 1 HETATM 2 C C2 T3 . . . D 4 -9.153 10.945 17.25 1 82.29 ? C2 T3 500 X 1 HETATM 3 C C3 T3 . . . D 4 -12.997 12.021 15.177 1 94.26 ? C3 T3 500 X 1 HETATM 4 C C4 T3 . . . D 4 -8.001 11.631 17.601 1 79.08 ? C4 T3 500 X 1 HETATM 5 C C5 T3 . . . D 4 -11.664 12.106 15.581 1 94.35 ? C5 T3 500 X 1 HETATM 6 C C6 T3 . . . D 4 -7.599 11.684 18.924 1 76.53 ? C6 T3 500 X 1 HETATM 7 C C7 T3 . . . D 4 -10.83 10.882 15.556 1 93.76 ? C7 T3 500 X 1 HETATM 8 C C8 T3 . . . D 4 -8.412 11.001 19.951 1 75.51 ? C8 T3 500 X 1 HETATM 9 C C9 T3 . . . D 4 -11.448 9.614 15.098 1 96.29 ? C9 T3 500 X 1 HETATM 10 C C10 T3 . . . D 4 -9.556 10.327 19.549 1 77.44 ? C10 T3 500 X 1 HETATM 11 C C11 T3 . . . D 4 -12.793 9.629 14.712 1 96.47 ? C11 T3 500 X 1 HETATM 12 C C12 T3 . . . D 4 -9.924 10.298 18.209 1 79.47 ? C12 T3 500 X 1 HETATM 13 C C13 T3 . . . D 4 -15.012 10.767 14.319 1 94.69 ? C13 T3 500 X 1 HETATM 14 C CA T3 . . . D 4 -15.197 9.89 13.079 1 95.04 ? CA T3 500 X 1 HETATM 15 C C T3 . . . D 4 -16.645 9.821 12.665 1 95.27 ? C T3 500 X 1 HETATM 16 I I1 T3 . . . D 4 -10.8 13.9 16.221 1 147.89 ? I1 T3 500 X 1 HETATM 17 I I2 T3 . . . D 4 -5.871 12.718 19.457 1 138.06 ? I2 T3 500 X 1 HETATM 18 I I3 T3 . . . D 4 -10.282 7.869 15.053 1 152.18 ? I3 T3 500 X 1 HETATM 19 N N T3 . . . D 4 -14.391 10.411 11.989 1 94.66 ? N T3 500 X 1 HETATM 20 O O1 T3 . . . D 4 -8.048 11.033 21.262 1 74.07 ? O1 T3 500 X 1 HETATM 21 O O2 T3 . . . D 4 -9.513 10.915 15.934 1 88.73 ? O2 T3 500 X 1 HETATM 22 O OXT T3 . . . D 4 -17.5 9.514 13.524 1 94.8 ? OXT T3 500 X 1 HETATM 23 O O T3 . . . D 4 -16.941 10.06 11.473 1 95.13 ? O T3 500 X 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #