data_4ZO5 # _model_server_result.job_id YF1nW1FTkLe-FqxODgUZcg _model_server_result.datetime_utc '2024-10-20 00:32:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zo5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":803}' # _entry.id 4ZO5 # _exptl.entry_id 4ZO5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 350.371 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(1-hydroxy-2-methylpropan-2-yl)-5-phenyl-3,5-dihydro-1H-imidazo[4,5-c][1,8]naphthyridine-2,4-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ZO5 _cell.length_a 51.07 _cell.length_b 81.38 _cell.length_c 159.18 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZO5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 83 A HIS 519 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc2 A NE2 HIS 117 A HIS 553 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc3 A OD2 ASP 118 A ASP 554 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc4 A OD1 ASP 118 A ASP 554 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc5 A OD1 ASP 228 A ASP 664 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc6 C ZN ZN . A ZN 801 1_555 I O HOH . A HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc7 D MG MG . A MG 802 1_555 I O HOH . A HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc8 D MG MG . A MG 802 1_555 I O HOH . A HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc9 D MG MG . A MG 802 1_555 I O HOH . A HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc10 D MG MG . A MG 802 1_555 I O HOH . A HOH 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc11 B NE2 HIS 83 B HIS 519 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? metalc ? metalc12 B NE2 HIS 117 B HIS 553 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc13 B OD2 ASP 118 B ASP 554 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc14 B OD1 ASP 118 B ASP 554 1_555 G MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? metalc ? metalc15 B OE2 GLU 146 B GLU 582 1_555 G MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.954 ? metalc ? metalc16 B OD1 ASP 228 B ASP 664 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc17 F ZN ZN . B ZN 801 1_555 J O HOH . B HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc18 G MG MG . B MG 802 1_555 J O HOH . B HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc19 G MG MG . B MG 802 1_555 J O HOH . B HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc20 G MG MG . B MG 802 1_555 J O HOH . B HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? # _chem_comp.formula 'C19 H18 N4 O3' _chem_comp.formula_weight 350.371 _chem_comp.id 4PX _chem_comp.mon_nstd_flag . _chem_comp.name 3-(1-hydroxy-2-methylpropan-2-yl)-5-phenyl-3,5-dihydro-1H-imidazo[4,5-c][1,8]naphthyridine-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 4PX doub 1 n y C C4 4PX sing 2 n y C1 N 4PX sing 3 n y C4 C3 4PX doub 4 n y N C2 4PX doub 5 n y C3 C2 4PX sing 6 n y C3 C8 4PX sing 7 n n C2 N5 4PX sing 8 n n N17 C8 4PX sing 9 n n N17 C16 4PX sing 10 n n C8 C7 4PX doub 11 n n N5 C9 4PX sing 12 n n N5 C6 4PX sing 13 n n C10 C9 4PX doub 14 n y C10 C11 4PX sing 15 n y C9 C14 4PX sing 16 n y C16 O18 4PX doub 17 n n C16 N15 4PX sing 18 n n C11 C12 4PX doub 19 n y C7 C6 4PX sing 20 n n C7 N15 4PX sing 21 n n C14 C13 4PX doub 22 n y C6 O 4PX doub 23 n n C12 C13 4PX sing 24 n y N15 C19 4PX sing 25 n n C19 C20 4PX sing 26 n n C19 C23 4PX sing 27 n n C19 C22 4PX sing 28 n n O21 C20 4PX sing 29 n n C H1 4PX sing 30 n n C1 H2 4PX sing 31 n n C4 H3 4PX sing 32 n n C10 H5 4PX sing 33 n n C11 H6 4PX sing 34 n n C12 H7 4PX sing 35 n n C13 H8 4PX sing 36 n n C14 H9 4PX sing 37 n n C20 H10 4PX sing 38 n n C20 H11 4PX sing 39 n n O21 H12 4PX sing 40 n n C22 H13 4PX sing 41 n n C22 H14 4PX sing 42 n n C22 H15 4PX sing 43 n n C23 H16 4PX sing 44 n n C23 H17 4PX sing 45 n n C23 H18 4PX sing 46 n n N17 H4 4PX sing 47 n n # _atom_sites.entry_id 4ZO5 _atom_sites.fract_transf_matrix[1][1] 0.019581 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012288 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006282 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 801 1 ZN ZN . D 3 MG A 1 802 2 MG MG . E 4 4PX A 1 803 1 4PX MMK . F 2 ZN B 1 801 3 ZN ZN . G 3 MG B 1 802 4 MG MG . H 5 4Q0 B 1 803 1 4Q0 MRK . I 6 HOH A 1 901 14 HOH HOH . I 6 HOH A 2 902 16 HOH HOH . I 6 HOH A 3 903 15 HOH HOH . I 6 HOH A 4 904 8 HOH HOH . I 6 HOH A 5 905 2 HOH HOH . I 6 HOH A 6 906 4 HOH HOH . I 6 HOH A 7 907 17 HOH HOH . I 6 HOH A 8 908 1 HOH HOH . I 6 HOH A 9 909 9 HOH HOH . I 6 HOH A 10 910 13 HOH HOH . I 6 HOH A 11 911 12 HOH HOH . I 6 HOH A 12 912 5 HOH HOH . I 6 HOH A 13 913 22 HOH HOH . I 6 HOH A 14 914 7 HOH HOH . J 6 HOH B 1 901 21 HOH HOH . J 6 HOH B 2 902 19 HOH HOH . J 6 HOH B 3 903 20 HOH HOH . J 6 HOH B 4 904 3 HOH HOH . J 6 HOH B 5 905 18 HOH HOH . J 6 HOH B 6 906 6 HOH HOH . J 6 HOH B 7 907 11 HOH HOH . J 6 HOH B 8 908 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 4PX . . . E 4 5.716 10.008 42.268 1 47.73 ? N 4PX 803 A 1 HETATM 2 C C 4PX . . . E 4 4.99 11.545 40.588 1 43.65 ? C 4PX 803 A 1 HETATM 3 O O 4PX . . . E 4 5.518 11.32 46.79 1 53.02 ? O 4PX 803 A 1 HETATM 4 C C1 4PX . . . E 4 5.505 10.33 40.989 1 43.93 ? C1 4PX 803 A 1 HETATM 5 C C2 4PX . . . E 4 5.419 10.938 43.19 1 47.04 ? C2 4PX 803 A 1 HETATM 6 C C3 4PX . . . E 4 4.908 12.18 42.851 1 46.79 ? C3 4PX 803 A 1 HETATM 7 C C4 4PX . . . E 4 4.678 12.493 41.53 1 41.8 ? C4 4PX 803 A 1 HETATM 8 N N5 4PX . . . E 4 5.599 10.667 44.57 1 45.79 ? N5 4PX 803 A 1 HETATM 9 C C6 4PX . . . E 4 5.312 11.565 45.608 1 49.47 ? C6 4PX 803 A 1 HETATM 10 C C7 4PX . . . E 4 4.758 12.881 45.2 1 46.89 ? C7 4PX 803 A 1 HETATM 11 C C8 4PX . . . E 4 4.595 13.122 43.906 1 46.78 ? C8 4PX 803 A 1 HETATM 12 C C9 4PX . . . E 4 6.3 9.494 44.931 1 44.41 ? C9 4PX 803 A 1 HETATM 13 C C10 4PX . . . E 4 7.673 9.435 44.792 1 40.94 ? C10 4PX 803 A 1 HETATM 14 C C11 4PX . . . E 4 8.312 8.285 45.2 1 40.06 ? C11 4PX 803 A 1 HETATM 15 C C12 4PX . . . E 4 7.609 7.221 45.732 1 39.63 ? C12 4PX 803 A 1 HETATM 16 C C13 4PX . . . E 4 6.244 7.28 45.886 1 38.68 ? C13 4PX 803 A 1 HETATM 17 C C14 4PX . . . E 4 5.606 8.434 45.492 1 43.07 ? C14 4PX 803 A 1 HETATM 18 N N15 4PX . . . E 4 4.372 13.987 45.932 1 46.32 ? N15 4PX 803 A 1 HETATM 19 C C16 4PX . . . E 4 3.951 14.931 44.982 1 47.04 ? C16 4PX 803 A 1 HETATM 20 N N17 4PX . . . E 4 4.102 14.359 43.735 1 47.07 ? N17 4PX 803 A 1 HETATM 21 O O18 4PX . . . E 4 3.512 16.062 45.147 1 44.4 ? O18 4PX 803 A 1 HETATM 22 C C19 4PX . . . E 4 4.315 14.154 47.411 1 46.05 ? C19 4PX 803 A 1 HETATM 23 C C20 4PX . . . E 4 3.553 15.387 47.881 1 44.86 ? C20 4PX 803 A 1 HETATM 24 O O21 4PX . . . E 4 4.285 16.58 47.649 1 45.91 ? O21 4PX 803 A 1 HETATM 25 C C22 4PX . . . E 4 3.494 13.06 48.077 1 43.99 ? C22 4PX 803 A 1 HETATM 26 C C23 4PX . . . E 4 5.685 14.177 48.061 1 42.44 ? C23 4PX 803 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #