data_4ZP3
#
_model_server_result.job_id            CMSgIIPVlJ3eE_2NVEbJdQ 
_model_server_result.datetime_utc      '2025-07-04 02:58:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4zp3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":101}' 
#
_entry.id    4ZP3 
#
_exptl.entry_id    4ZP3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              112.411 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CADMIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.01 
_cell.angle_gamma         90 
_cell.entry_id            4ZP3 
_cell.length_a            56.922 
_cell.length_b            120.988 
_cell.length_c            57.123 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ZP3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
PISA trimeric 3 author_and_software_defined_assembly 3 
PISA trimeric 3 author_and_software_defined_assembly 4 
PISA trimeric 3 author_and_software_defined_assembly 5 
PISA trimeric 3 author_and_software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,M,S,T,W,X,IA 1 1 
C,D,N,Y,Z,JA 2 1 
E,F,O,U,AA,BA,KA 3 1 
G,H,P,V,CA,DA,LA 4 1 
I,J,Q,EA,FA,MA 5 1 
K,L,R,GA,HA,NA 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 41 A GLU 41 1_555 S CD CD . A CD 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? 
metalc ? metalc2 S CD CD . A CD 101 1_555 D OE1 GLU 41 D GLU 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc3 S CD CD . A CD 101 1_555 D OE2 GLU 41 D GLU 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc4 S CD CD . A CD 101 1_555 I OE1 GLU 41 I GLU 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc5 S CD CD . A CD 101 1_555 I OE2 GLU 41 I GLU 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc6 B OE1 GLU 41 B GLU 41 1_555 T CD CD . B CD 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc7 B OE2 GLU 41 B GLU 41 1_555 T CD CD . B CD 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc8 T CD CD . B CD 101 1_555 C OE1 GLU 41 C GLU 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
metalc ? metalc9 T CD CD . B CD 101 1_555 C OE2 GLU 41 C GLU 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc10 T CD CD . B CD 101 1_555 J OE1 GLU 41 J GLU 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc11 T CD CD . B CD 101 1_555 J OE2 GLU 41 J GLU 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc12 E OE1 GLU 41 E GLU 41 1_555 V CD CD . H CD 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc13 E OE2 GLU 41 E GLU 41 1_555 V CD CD . H CD 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc14 F OE1 GLU 41 F GLU 41 1_555 U CD CD . F CD 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
metalc ? metalc15 F OE2 GLU 41 F GLU 41 1_555 U CD CD . F CD 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc16 U CD CD . F CD 101 1_555 G OE1 GLU 41 G GLU 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc17 U CD CD . F CD 101 1_555 G OE2 GLU 41 G GLU 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
metalc ? metalc18 U CD CD . F CD 101 1_556 K OE1 GLU 41 K GLU 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc19 U CD CD . F CD 101 1_556 K OE2 GLU 41 K GLU 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc20 V CD CD . H CD 101 1_556 L OE1 GLU 41 L GLU 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc21 V CD CD . H CD 101 1_556 L OE2 GLU 41 L GLU 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
#
_chem_comp.formula           'Cd 2' 
_chem_comp.formula_weight    112.411 
_chem_comp.id                CD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CADMIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4ZP3 
_atom_sites.fract_transf_matrix[1][1]    0.017568 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000923 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008265 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01753 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
S 3 CD A 1 101 1 CD CD . 
T 3 CD B 1 101 2 CD CD . 
U 3 CD F 1 101 3 CD CD . 
V 3 CD H 1 101 4 CD CD . 
W 4 HOH A 1 201 71 HOH HOH . 
W 4 HOH A 2 202 75 HOH HOH . 
W 4 HOH A 3 203 60 HOH HOH . 
W 4 HOH A 4 204 40 HOH HOH . 
W 4 HOH A 5 205 35 HOH HOH . 
W 4 HOH A 6 206 64 HOH HOH . 
X 4 HOH B 1 201 9 HOH HOH . 
X 4 HOH B 2 202 10 HOH HOH . 
X 4 HOH B 3 203 8 HOH HOH . 
X 4 HOH B 4 204 51 HOH HOH . 
X 4 HOH B 5 205 56 HOH HOH . 
X 4 HOH B 6 206 46 HOH HOH . 
Y 4 HOH C 1 101 13 HOH HOH . 
Y 4 HOH C 2 102 11 HOH HOH . 
Y 4 HOH C 3 103 4 HOH HOH . 
Y 4 HOH C 4 104 44 HOH HOH . 
Y 4 HOH C 5 105 21 HOH HOH . 
Y 4 HOH C 6 106 6 HOH HOH . 
Z 4 HOH D 1 101 5 HOH HOH . 
Z 4 HOH D 2 102 12 HOH HOH . 
Z 4 HOH D 3 103 45 HOH HOH . 
Z 4 HOH D 4 104 14 HOH HOH . 
Z 4 HOH D 5 105 66 HOH HOH . 
Z 4 HOH D 6 106 67 HOH HOH . 
AA 4 HOH E 1 101 15 HOH HOH . 
AA 4 HOH E 2 102 16 HOH HOH . 
AA 4 HOH E 3 103 17 HOH HOH . 
AA 4 HOH E 4 104 54 HOH HOH . 
BA 4 HOH F 1 201 20 HOH HOH . 
BA 4 HOH F 2 202 19 HOH HOH . 
BA 4 HOH F 3 203 18 HOH HOH . 
BA 4 HOH F 4 204 24 HOH HOH . 
BA 4 HOH F 5 205 38 HOH HOH . 
BA 4 HOH F 6 206 25 HOH HOH . 
CA 4 HOH G 1 101 22 HOH HOH . 
CA 4 HOH G 2 102 73 HOH HOH . 
CA 4 HOH G 3 103 74 HOH HOH . 
DA 4 HOH H 1 201 26 HOH HOH . 
EA 4 HOH I 1 101 28 HOH HOH . 
EA 4 HOH I 2 102 41 HOH HOH . 
FA 4 HOH J 1 101 30 HOH HOH . 
FA 4 HOH J 2 102 43 HOH HOH . 
FA 4 HOH J 3 103 70 HOH HOH . 
FA 4 HOH J 4 104 31 HOH HOH . 
GA 4 HOH K 1 101 34 HOH HOH . 
GA 4 HOH K 2 102 33 HOH HOH . 
GA 4 HOH K 3 103 57 HOH HOH . 
GA 4 HOH K 4 104 32 HOH HOH . 
GA 4 HOH K 5 105 42 HOH HOH . 
HA 4 HOH L 1 101 58 HOH HOH . 
HA 4 HOH L 2 102 68 HOH HOH . 
IA 4 HOH M 1 101 65 HOH HOH . 
IA 4 HOH M 2 102 63 HOH HOH . 
JA 4 HOH N 1 101 59 HOH HOH . 
JA 4 HOH N 2 102 55 HOH HOH . 
JA 4 HOH N 3 103 39 HOH HOH . 
KA 4 HOH O 1 101 62 HOH HOH . 
KA 4 HOH O 2 102 48 HOH HOH . 
KA 4 HOH O 3 103 69 HOH HOH . 
LA 4 HOH P 1 101 72 HOH HOH . 
MA 4 HOH Q 1 101 61 HOH HOH . 
NA 4 HOH R 1 101 37 HOH HOH . 
NA 4 HOH R 2 102 53 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CD 
_atom_site.label_atom_id         CD 
_atom_site.label_comp_id         CD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         T 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               17.04 
_atom_site.Cartn_y               -20.068 
_atom_site.Cartn_z               29.681 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        29.8 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CD 
_atom_site.auth_comp_id          CD 
_atom_site.auth_seq_id           101 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#