data_4ZPH # _model_server_result.job_id 7iwnhpAl6ptnklHVlVGX5A _model_server_result.datetime_utc '2024-10-15 10:22:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4zph # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 4ZPH # _exptl.entry_id 4ZPH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 209.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PROFLAVIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 89.83 _cell.angle_beta 89.64 _cell.angle_gamma 73.21 _cell.entry_id 4ZPH _cell.length_a 48.896 _cell.length_b 76.418 _cell.length_c 98.345 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZPH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G 1 1 C,D,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H11 N3' _chem_comp.formula_weight 209.247 _chem_comp.id PRL _chem_comp.mon_nstd_flag . _chem_comp.name PROFLAVIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PRL doub 260 n y C1 C13 PRL sing 261 n y C1 H1 PRL sing 262 n n C2 C3 PRL sing 263 n y C2 H2 PRL sing 264 n n C3 C4 PRL doub 265 n y C3 N15 PRL sing 266 n n C4 C11 PRL sing 267 n y C4 H4 PRL sing 268 n n C5 C6 PRL doub 269 n y C5 C14 PRL sing 270 n y C5 H5 PRL sing 271 n n C6 C7 PRL sing 272 n y C6 N16 PRL sing 273 n n C7 C8 PRL doub 274 n y C7 H7 PRL sing 275 n n C8 C12 PRL sing 276 n y C8 H8 PRL sing 277 n n C9 C12 PRL doub 278 n y C9 C13 PRL sing 279 n y C9 H9 PRL sing 280 n n N10 C11 PRL sing 281 n y N10 C14 PRL doub 282 n y C11 C13 PRL doub 283 n y C12 C14 PRL sing 284 n y N15 HNF1 PRL sing 285 n n N15 HNF2 PRL sing 286 n n N16 HNG1 PRL sing 287 n n N16 HNG2 PRL sing 288 n n # _atom_sites.entry_id 4ZPH _atom_sites.fract_transf_matrix[1][1] 0.020452 _atom_sites.fract_transf_matrix[1][2] -0.006171 _atom_sites.fract_transf_matrix[1][3] -0.000121 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013669 _atom_sites.fract_transf_matrix[2][3] -0.000016 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010168 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 PRL A 1 501 501 PRL PRL . F 4 HOH A 1 601 11 HOH HOH . F 4 HOH A 2 602 17 HOH HOH . F 4 HOH A 3 603 16 HOH HOH . F 4 HOH A 4 604 13 HOH HOH . F 4 HOH A 5 605 9 HOH HOH . F 4 HOH A 6 606 15 HOH HOH . F 4 HOH A 7 607 12 HOH HOH . F 4 HOH A 8 608 10 HOH HOH . F 4 HOH A 9 609 14 HOH HOH . F 4 HOH A 10 610 24 HOH HOH . G 4 HOH B 1 401 2 HOH HOH . G 4 HOH B 2 402 3 HOH HOH . G 4 HOH B 3 403 1 HOH HOH . G 4 HOH B 4 404 20 HOH HOH . G 4 HOH B 5 405 21 HOH HOH . G 4 HOH B 6 406 6 HOH HOH . G 4 HOH B 7 407 25 HOH HOH . G 4 HOH B 8 408 18 HOH HOH . G 4 HOH B 9 409 19 HOH HOH . H 4 HOH C 1 501 26 HOH HOH . I 4 HOH D 1 401 5 HOH HOH . I 4 HOH D 2 402 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PRL . . . E 3 169.9 -110.316 -113.503 1 67.14 ? C1 PRL 501 A 1 HETATM 2 C C2 PRL . . . E 3 168.999 -111.308 -113.862 1 69.1 ? C2 PRL 501 A 1 HETATM 3 C C3 PRL . . . E 3 168.984 -112.516 -113.165 1 71.02 ? C3 PRL 501 A 1 HETATM 4 C C4 PRL . . . E 3 169.865 -112.73 -112.113 1 61.33 ? C4 PRL 501 A 1 HETATM 5 C C5 PRL . . . E 3 173.365 -111.211 -109.347 1 44.35 ? C5 PRL 501 A 1 HETATM 6 C C6 PRL . . . E 3 174.26 -110.224 -108.98 1 50.06 ? C6 PRL 501 A 1 HETATM 7 C C7 PRL . . . E 3 174.293 -109.018 -109.658 1 48.16 ? C7 PRL 501 A 1 HETATM 8 C C8 PRL . . . E 3 173.42 -108.789 -110.707 1 47.18 ? C8 PRL 501 A 1 HETATM 9 C C9 PRL . . . E 3 171.66 -109.556 -112.094 1 55.68 ? C9 PRL 501 A 1 HETATM 10 N N10 PRL . . . E 3 171.615 -111.95 -110.744 1 49.11 ? N10 PRL 501 A 1 HETATM 11 C C11 PRL . . . E 3 170.756 -111.735 -111.762 1 55.64 ? C11 PRL 501 A 1 HETATM 12 C C12 PRL . . . E 3 172.517 -109.777 -111.07 1 48.72 ? C12 PRL 501 A 1 HETATM 13 C C13 PRL . . . E 3 170.778 -110.531 -112.449 1 61.12 ? C13 PRL 501 A 1 HETATM 14 C C14 PRL . . . E 3 172.493 -110.982 -110.393 1 43.48 ? C14 PRL 501 A 1 HETATM 15 N N15 PRL . . . E 3 168.066 -113.543 -113.529 1 72.66 ? N15 PRL 501 A 1 HETATM 16 N N16 PRL . . . E 3 175.161 -110.453 -107.916 1 59.8 ? N16 PRL 501 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #